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1 e catalytic activity, which is predominantly trans acting.
2 t and remain unmethylated in the presence of trans-acting 24-nt siRNAs can nevertheless acquire methy
3 orescence studies suggest that both cis- and trans-acting 3D molecules localize to the same cellular
6 slation could be specifically enhanced using trans-acting agents that counter the function of negativ
8 ticularly complex, consisting of cis-acting, trans-acting and, surprisingly, compensatory cis-trans e
9 e side-chain conformation of residue R359, a trans-acting arginine-finger residue essential for ATP h
10 ncluding ClpB/Hsp104, possess a pair of such trans-acting arginines in the N-terminal nucleotide bind
13 g of somatic genes is attributable to either trans-acting cellular environment or cis-acting chromati
15 her determined the contributions of cis- and trans-acting changes in splicing regulatory networks by
16 ess clear is how these changes interact with trans-acting changes occurring elsewhere in the genetic
19 length elements, able to encode the cis and trans acting components of the retrotransposition machin
23 e rebuilt structures to a higher resolution, trans-acting deoxy-inhibited structure of the ribozyme,
24 what we believe to be a novel in cis- and in trans-acting DNA and lncRNA regulatory feedback element
25 or the presence of histone modifications and trans-acting DNA binding proteins using chromatin immuno
26 ical strains contribute an HDAC-independent, trans-acting dominant means of control over viral gene e
27 tion, or stability of co-transcribed RNA, or trans-acting, e.g. small regulatory RNAs, which target s
29 e in Drosophila melanogaster has substantial trans-acting effects on the regulation of X-linked and a
31 he terminal repeat (TR) element and requires trans-acting elements, both viral and cellular, such as
32 ty is likely due to changes in both cis- and trans-acting elements, hinting at widespread and frequen
34 ent an important class of sequence-specific, trans-acting endogenous small RNA molecules that modulat
38 ignment indicates a general applicability to trans-acting ERs of fungal PKSs, as well as their potent
40 esponse can be explained by a single cis- or trans-acting expression quantitative trait locus (eQTL).
41 identify and describe a role for FANCD2 as a trans-acting facilitator of CFS replication, in the abse
42 gs are consistent with NCL acting as an IRES trans-acting factor (ITAF) for ORF2 translation and henc
43 mportant internal ribosome entry site (IRES) trans-acting factor (ITAF) for poliovirus IRES-mediated
44 ion-dependent CNSHA caused by mutations in a trans-acting factor (Kruppel-like factor 1) and reveal a
47 ng protein 1) was originally discovered as a trans-acting factor for the "zipcode" in the 3' untransl
48 ow that Zar2 contains a zinc finger and is a trans-acting factor for the TCS in maternal mRNAs in imm
50 results illustrate a mechanism that controls trans-acting factor function in a locus-specific manner,
51 al mediator of this transport process is the trans-acting factor heterogeneous nuclear ribonucleoprot
52 s nuclear ribonucleoprotein A2 (hnRNP A2), a trans-acting factor required for dendritic delivery.
53 says, we discovered that Sam68 is a possible trans-acting factor that binds to this region and regula
54 nizes the glucocorticoid receptor as a novel trans-acting factor that regulates CFTR expression in vi
55 nscripts, suggesting that PCBP1 can act as a trans-acting factor to stabilize sortilin transcripts.
56 ivery of the corresponding cognate synthetic trans-acting factor ZF6-DB without the intrinsic transcr
57 ng the interaction of a requisite c-MYC IRES trans-acting factor, heterogeneous nuclear ribonucleopro
58 gent cadicivirus IRESs require the same IRES trans-acting factor, poly(C)-binding protein 2 (PCBP2).
59 shared cis-regulatory signature and a common trans-acting factor, the phylogenetically conserved COE
60 ne if Spn1 causes a fitness defect through a trans-acting factor, we constructed an Spn1(+) mutant th
62 f libraries to provide a prediction of which trans -acting factors binding sites are disrupted/create
64 d causes defects in the recycling of several trans-acting factors (hEnp1, hRio2, hLtv1, hDim2/PNO1, a
65 tion factors, type 2 IRESs also require IRES trans-acting factors (ITAFs) that are hypothesized to st
66 nitiation on Type 1 IRESs also requires IRES trans-acting factors (ITAFs), and several candidates hav
71 s how cis-acting sequence elements influence trans-acting factors and the local chromatin environment
72 recent strategies aimed at uncovering novel trans-acting factors and their functional role in the NM
73 torial regulatory activity and that multiple trans-acting factors are involved in the regulatory effe
74 of ribosomes occurs in the cytoplasm, where trans-acting factors are removed and critical ribosomal
75 previously mapped deletions, and studied the trans-acting factors binding to these sites in the beta-
76 However, RNA cis-regulatory elements and trans-acting factors contributing to HPV18 alternative R
78 se data highlight the nature of the cis- and trans-acting factors controlling the beta-cell-specific
79 of nuclear levels and acetylation status of trans-acting factors critical in determining the off/on
82 ents, raising the possibility that undefined trans-acting factors governing mRNA stability and transl
87 ribosomal particles have identified numerous trans-acting factors involved in this process, many prot
88 The structure indicates that the binding of trans-acting factors is required to remodel the tertiary
89 s local activity of super-enhancers and that trans-acting factors modulate DNA methylation profiles w
92 fied hnRNP A1 (A1) and RPS25 as IRES-binding trans-acting factors required for ER stress-activated ac
94 lthough genetic screens have identified some trans-acting factors required for the localization of th
95 been well studied, little is known about the trans-acting factors responsible for developmental contr
96 this study, we sought to define the cis- and trans-acting factors responsible for initiation and main
99 e aim of this study was to discover cis- and trans-acting factors significantly affecting mRNA expres
100 forward-genetic screens aimed at identifying trans-acting factors that are required for expression of
101 esults advance our knowledge of the cis- and trans-acting factors that are required for transcription
102 e better addressed by a method that maps all trans-acting factors that bind particular regions rather
103 ults should facilitate the identification of trans-acting factors that bind to these cis elements and
104 ) sequences, as well as by binding sites for trans-acting factors that can evict nucleosomes, such as
105 fy cis-regulatory elements and corresponding trans-acting factors that contribute to EC identity and
106 an intracellular network of nucleus-encoded, trans-acting factors that control almost all aspects of
110 er, the array of cis-regulatory elements and trans-acting factors that mediate these transcriptional
113 eukaryotes, these events are facilitated by trans-acting factors that propel ribosome maturation fro
114 abidopsis relies in large part on binding of trans-acting factors to cis-localized DNA sequence motif
115 throughput system for systematically linking trans-acting factors to endogenous RNA regulatory events
116 ription is orchestrated by multiple cis- and trans-acting factors to ensure appropriate expression of
117 re well studied, but how the interactions of trans-acting factors with cis-regulatory modules (CRMs)
118 ry elements, e.g., promoters, enhancers, and trans-acting factors, are essential for the proper contr
119 ssection of both cis-regulatory elements and trans-acting factors, as well as the interpretation of v
120 ass the intricate interplay between cis- and trans-acting factors, chromatin, and the core transcript
122 on are considered an important complement to trans-acting factors, histone modifications and non-codi
124 o well-characterized binding sites for known trans-acting factors, including hepatocyte nuclear facto
125 of RNA are regulated by interactions between trans-acting factors, such as microRNA and RNA-binding p
126 In this study, we identified two p53 IRES trans-acting factors, translational control protein 80 (
127 Sec incorporation requires both cis- and trans-acting factors, which are known to be sufficient f
128 show that two recently identified c-myc IRES trans-acting factors, Y-box binding protein 1 (YB-1) and
129 that these "seed" nucleosomes--together with trans-acting factors--may facilitate the establishment o
143 l regulation in eukaryotes requires cis- and trans-acting features and factors including RNA secondar
144 ed by basally phosphorylated NS5A, while the trans-acting function likely requires hyperphosphorylati
145 ies of a host microRNA, and induction of the trans-acting function of phased secondary small interfer
146 as part of the HCV replication complex and a trans-acting function that may occur outside the replica
148 es nucleosome occupancy maps for discovering trans-acting general regulatory factor (GRF) binding sit
149 panel of human HapMap cell lines to identify trans-acting genes whose expression and/or single-nucleo
154 although Arg-349 of sensor II, positioned by trans-acting Glu-286 and Tyr-290, acts as a key residue
155 d to open" movement of Walker A, assisted by trans-acting "Glu switch" Glu-286, facilitates ATP bindi
157 w tightly an incoming subunit will be bound (trans-acting GTP), but most current models do not incorp
159 t start codon selection is regulated by many trans-acting initiation factors as well as sequence/stru
160 NA sequencing to identify 4 riboswitches, 13 trans-acting (intergenic), and 22 cis-acting (antisense)
162 lity and disruption of MSCI and suggest that trans-acting loci on the X are important for the transcr
164 s and mapped hundreds of underlying cis- and trans-acting loci throughout the genome that regulate hi
165 resulted primarily from effects of distal-, trans-acting loci, but a striking example of a local-GxE
166 revealed that this effect was largely due to trans-acting loci, many of which showed evidence of loca
168 eral muscular dystrophy type 2 (FSHD2) via a trans-acting loss-of-function epigenetic mechanism.
169 of Aire(+) mTEC, our data show how cis- and trans-acting mechanisms are able to control the thymus m
170 by modification of deeply conserved cis- and trans-acting mechanisms of Hox regulation in gnathostome
174 from human pedigrees that S44L and P45Q are trans-acting modifiers of mutations affecting the Spasti
175 owever, modifications of individual cis- and trans-acting modules can be molded by natural selection
181 numerous putative regulatory RNAs, including trans-acting non-coding RNAs and anti-sense transcripts.
185 gement may serve as a signal that recruits a trans-acting nuclease (Cas3) for destruction of invading
186 y complex) to bind foreign DNA and recruit a trans-acting nuclease (i.e., Cas2/3) for target degradat
188 that binds foreign DNA and recruits Cas3, a trans-acting nuclease helicase for target degradation.
189 mbe and S. octosporus, and binding sites for trans-acting nucleosome-excluding proteins functioning i
191 miRNA target mimics and lncRNAs that produce trans-acting or phased small-interfering RNA (tasiRNA/ph
192 lymorphisms within GALNT13 (P < 0.005), four trans-acting (P < 2.1 x 10(-7)) and one cis-acting (P =
193 othesis requires the existence of a specific trans-acting PDZ protein that mediates the proposed sort
194 within their native context and as separate trans-acting peptides, confirmed that the aromatic resid
195 CH protein, TbZFP3, has been identified as a trans-acting post-transcriptional regulator of Procyclin
197 h -2 and -1 PRF and in its requirement for a trans-acting protein factor, the viral replicase subunit
200 ce within the region prevents binding of the trans-acting protein(s), increasing promoter activity 7-
201 plex control of atxA transcription, only one trans-acting protein, the transition state regulator Abr
203 , we identified both cis-acting elements and trans-acting proteins that are required for HBoV1 DNA re
204 etween enhancer cis-acting DNA sequences and trans-acting proteins that recognize these DNA elements
205 tic screening approach in yeast, we identify trans-acting proteins that regulate the accumulation of
206 uently based on sequence-specific binding of trans-acting proteins to cis-acting motifs on target RNA
213 -ASM is highly tissue specific; an important trans-acting regulator of genomic imprinting is regulate
220 tive contributions and interplay of cis- and trans-acting regulatory factors to this evolutionary pro
221 immunodeficiency virus, type 1 (HIV-1) Tat (trans-acting regulatory protein) induces interleukin-10
224 ing, through the production of plasmid-coded trans-acting replication inhibitors, and obedience, expr
225 d by a weak cis-acting promoter and putative trans-acting repressor(s) present in A. arenosa and allo
228 doCbl-binding riboswitch is part of a small, trans-acting RNA, EutX, which additionally contains a du
229 is elements contained within the message and trans-acting RNA-binding proteins (e.g., She2, Puf2).
231 ddress the question whether fragmentation of trans-acting RNAs is accompanied by the formation of a c
232 ated by sigB and cshA and plays an important trans-acting role in modulating the transcription and en
233 ionarily conserved microRNA that targets the Trans-Acting Short Interference RNA3 (TAS3) transcript.
234 eaflet1, is required for the biogenesis of a trans-acting short interfering RNA (ta-siRNA) to negativ
235 h as Argonaute7, a specific component of the trans-acting short interfering RNA3 pathway, an RNA-depe
237 nse and in development via the biogenesis of trans-acting short-interfering RNAs (siRNAs) termed tasi
238 w how evolutionary changes in cis as well as trans acting signals have played a fundamental role in d
239 R828 in Arabidopsis triggers the cleavage of Trans-Acting SiRNA Gene 4 (TAS4) transcripts and product
241 y spaced lateral organs, suggesting that the trans-acting siRNA3 (TAS3) pathway negatively regulates
242 is targeted by miR828 and miR858, generating trans-acting siRNAs (ta-siRNAs) in the TAS4 family.
243 22 novel miRNAs and 6 genomic loci producing trans-acting siRNAs (ta-siRNAs) including TAS3a to TAS3e
244 ssed highly abundant but less conserved TAS3 trans-acting siRNAs (tasiRNAs) in addition to tasiR-ARFs
246 licing is required for biogenesis of phased, trans-acting siRNAs (tasiRNAs), whose cleaved precursor
250 3 by ARGONAUTE7 results in the production of trans-acting small interference RNAs, which target mRNAs
251 uced accumulation of miR390, an initiator of trans-acting small interfering RNA (ta-siRNA) formation,
252 the shared repression of ARF3 by the AS and trans-acting small interfering RNA (ta-siRNA) pathways i
253 by promoting the biogenesis of TAS3-derived trans-acting small interfering RNA (ta-siRNA), which rep
254 wo TAS gene families with similar but unique trans-acting small interfering RNA (tasiRNA) biogenesis
256 re, we demonstrate that the microRNA (miRNA)-trans-acting small interfering RNA gene (TAS)-pentatrico
257 on of repetitive elements, an absence of the trans-acting small interfering RNA pathway, and extensiv
259 like protein required to produce ta-siARF, a trans-acting small interfering RNA that targets abaxiall
260 -like protein required for the biogenesis of trans-acting small interfering RNA, which regulates the
261 Artificial microRNAs (amiRNAs) and synthetic trans-acting small interfering RNAs (syn-tasiRNAs) are u
262 of artificial miRNAs (amiRNAs) and synthetic trans-acting small interfering RNAs (syn-tasiRNAs) for e
265 atens miR156 also influences accumulation of trans-acting small interfering RNAs (tasiRNAs) dependent
267 sses of sRNAs such as microRNAs (miRNAs) and trans-acting small interfering RNAs have been shown to b
270 imary function is to promote pairing between trans-acting small non-coding RNAs (sRNAs) and their tar
271 d cognate target messenger RNAs and specific trans-acting small RNAs, such as the posttranscriptional
273 NDOR, a method that represents both cis- and trans-acting SNPs and the genes with which they are asso
275 ilencers that regulate exon 13 inclusion via trans-acting splicing factors like PTBP1 and TIAL1.
280 We show that Bacillus subtilis RoxS, a major trans-acting sRNA shared with Staphylococus aureus, prev
283 Q/FinO domain-containing proteins can assist trans-acting sRNAs and that this class of RNA chaperones
287 -term ribosome deficits through compensatory trans-acting suppressors, cells are penalized in the lon
288 estion is whether proteins might function as trans-acting switches to turn frameshifting on or off in
290 terminator read-through assay, we identified trans-acting Terminator Override (TOV) genes that operat
291 moter deletion/substitutions, mutants in the trans-acting transcription factors and their upstream pr
293 us demonstrate that our approach can uncover trans-acting transcriptional control circuits that affec
294 nd proteomic studies, we show that FthB is a trans-acting transfer RNA (tRNA) editing protein, which
296 ple, in response to a virus-like stimulus, a trans-acting variant responds as an activator of the ant
297 additive inheritance, while those linked to trans-acting variants are most often dominantly inherite
299 ependent RNA polymerase (L protein), the two trans-acting viral factors required for both virus RNA r
300 ge-scale RNA interference screen to identify trans-acting XCI factors (XCIFs) that comprise regulator
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