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1 that this segment of chromosomal DNA was not transcribed.
2 show that the active ES-adjacent telomere is transcribed.
3 ated with the chromosome from which they are transcribed.
4 nging of these nutrients were being actively transcribed.
5 orded, with the participants' permission,and transcribed.
6 ch cell type only a subset of genes is being transcribed.
7 sequences which, in some cases, are actively transcribed.
8 D59 and show that this segment of DNA is not transcribed.
9 The noncoding genome is pervasively transcribed.
10 istal regulatory elements, we adapt the self-transcribing active regulatory region sequencing (STARR-
13 In eukaryotes, RNA polymerase II (pol II) transcribes all protein-coding genes and many noncoding
14 e yeast RNA polymerase II (Pol II) molecules transcribing along a DNA template with two nucleosomes.
16 in the ambient temperature range and FLM is transcribed and alternatively spliced in a temperature-d
17 edly, in wild-type (WT) TSCs these genes are transcribed and are enriched for active chromatin hallma
23 omprises eight RNA segments (vRNA) which are transcribed and replicated by the heterotrimeric IAV RNA
24 The RNA genome of influenza A viruses is transcribed and replicated by the viral RNA-dependent RN
25 uggested that the replicating pool of DNA is transcribed and that few if any additional viral protein
26 encoding the core complex of the T9SS are co-transcribed and that the gene products are distributed i
29 aracterizing the bacterial extracts used for transcribing and translating gene sequences into protein
30 ter the coaching session was audio recorded, transcribed, and analyzed by using linear regression mod
32 urgical coaching program were audiorecorded, transcribed, and coded on the basis of 3 relationship-bu
33 rt sites of HSV-1-induced and constitutively transcribed antisense transcripts are highly similar, in
35 oximately 98% of the human genomic output is transcribed as non-protein coding RNA, <2% of the protei
36 tional program; all protein-coding genes are transcribed as part of a polygenic precursor mRNA (pre-m
37 ted endings of these sensory neurons, and is transcribed at different levels in distinct olfactory ne
40 tly enriched with H3K9me3 or H3K27me3 and is transcribed at higher levels than the rest of NL genes.
42 nes, compared with their receptor genes, are transcribed at much greater absolute levels, which sugge
43 NA for the major heat shock protein Hsp70 is transcribed at robust levels in both H2Av and JIL-1 null
47 Prognostic discussion was assessed by coding transcribed audio-recorded visits using the Prognostic a
48 d multiple such loci that are differentially transcribed between healthy and diseased tissues in colo
49 ion revealed that two of seven G84E carriers transcribed both the variant and wild-type allele, while
51 stochastically expressed protocadherins were transcribed by increased numbers of cortical neurons, in
52 and localization of a set of mRNAs that are transcribed by NDT80 but not translated until the end of
54 6 is commonly associated with genes actively transcribed by RNA polymerase II (RNAPII) and is catalyz
60 Transfer RNA (tRNA) genes (tDNAs), which are transcribed by RNA polymerase III (RNAPIII) and encode R
61 on of the viral positive-sense genome and is transcribed by RNA polymerase III into a noncoding RNA o
62 abundant class of retrotransposons that are transcribed by RNA polymerase III, thus generating exclu
64 that are typically associated with actively transcribed chromatin are detrimental to ATXR5 activity.
67 ns, and with spatial distributions of highly-transcribed chromosomal regions matching recent experime
68 aches to demonstrate that two differentially transcribed, co-diverging genes in the eukaryotic associ
69 or every base pair of the genome that may be transcribed: coding, noncoding, and intergenic regions,
71 st that basic building blocks of divergently transcribed core promoter pairs, in combination with the
72 PML NBs are closely associated with actively transcribed DDIT4 loci, implicating these bodies in regu
74 s), which are enveloped viruses with reverse-transcribed DNA genomes, constitute the family Hepadnavi
75 Escherichia coli replisome movement along transcribed DNA is promoted by Rep and UvrD accessory he
79 sense and antisense strand DNA mutations on transcribed duplex DNA contributes to the development of
82 or the specific set of transcription factors transcribed during tertiary cell wall formation were rev
83 jected into the host along with phage DNA to transcribe early phage genes, and a non-virion RNAP (nvR
84 We have shown that one of these, DP148R, is transcribed early during virus replication in cells and
85 ce in situ hybridization identified actively transcribing, EdU-labeled HIV-1 genomes in productively
87 e fidelity of nascent RNAs from all actively transcribing elongation complexes (ECs) in Escherichia c
88 east cancer subtype-specific TFs that act at transcribed enhancers to dictate gene expression pattern
90 his demonstrates the essentiality of a Pol I-transcribed ES, as well as conserved VSG 3'UTR 16-mer se
92 circRNAs (f-circRNA) that are produced from transcribed exons of distinct genes affected by the tran
94 lope genes, its encoding gene is found to be transcribed from a unique CpG-rich promoter not related
96 vity of HBV enhancer and the amount of pgRNA transcribed from cccDNA) were significantly higher in ce
97 Tubular and toroid shapes, among others, are transcribed from DNA cages to liposomes with high fideli
101 ght better explain how low-abundance lncRNAs transcribed from noncoding DNA function in organisms.
102 gate the intracellular localization of sRNAs transcribed from plasmids in Escherichia coli using RNA
103 sites of initiation and found that many were transcribed from promoters containing a new consensus se
105 RNA (TERRA), the long noncoding RNA (lncRNA) transcribed from telomeres, have eluded researchers.
107 ns-acting sRNAs, are the most abundant sRNAs transcribed from the intergenic regions (IGRs) of the ba
108 that in primary human erythroblasts, lncRNAs transcribed from the LTR retrotransposons of ERV-9 human
109 NA produced by alternative processing of RNA transcribed from the same gene that promotes recovery fr
113 xyR2 is required to activate its divergently transcribed gene ahpC, encoding an alkylhydroperoxide re
118 lex contribute to Chd1 recruitment to highly transcribed genes and identified Spt4 as a factor that a
119 uently found at promoter regions of actively transcribed genes and is therefore generally considered
120 cterial chromosomes, explaining why actively transcribed genes are always co-oriented with replicatio
121 high-throughput study of the complete set of transcribed genes at increasingly fine resolution to the
123 on signal in the downstream region of highly transcribed genes in a temperature-sensitive mutant of C
125 Importantly, DNA-RNA hybrids accumulated at transcribed genes in mlp1/2 mutants, indicating that Mlp
126 PRC2 acts as a brake to prevent induction of transcribed genes on the inactive X chromosome, a mode o
127 27ac and H3K9ac on the promoters of actively transcribed genes that are essential for leukaemia.
128 frequent templated inserts originating from transcribed genes that, in rare cases, comprised exons w
130 litate assembly of the elongation complex on transcribed genes when RNA emerges from Pol II, and that
131 ell RNAseq and ChIPseq to find that actively transcribed genes with Polycomb marks have greater cell-
132 tistical distribution of all isoforms of all transcribed genes, and reveals that previously unexplain
133 y associated with RNA polymerase II (Pol II)-transcribed genes, but is not an unambiguous mark for ac
135 plication fork stalling in RNAPI- and RNAPII-transcribed genes, suggesting that RECQ5 exerts its geno
136 networks, each containing just a few Pol II transcribed genes, that generate specific signal-process
137 including G4 DNA are located within actively transcribed genes, the reshaping of DNA topology necessa
138 bromodomain proteins at the loci of actively transcribed genes, whereas PRC2 is excluded from these r
147 r THSC) facilitates localization of actively transcribing genes such as GAL1 to the nuclear periphery
148 d3S histone deacetylase complex recruited to transcribing genes, operate in a combinatorial manner in
149 these sites to splice cellular pre-mRNAs at transcribing genes, we reveal a functional subversion of
152 ach provides new insights into the nature of transcribing HIV-1 genomes and allows us to track the en
153 , RNA polymerase III is highly conserved and transcribes housekeeping genes such as ribosomal 5S rRNA
154 -pass filtering circuit; repeated Erk pulses transcribe IEGs more efficiently than sustained Erk inpu
155 A substantial fraction of the genome is transcribed in a cell-type-specific manner, producing lo
157 ression of the isoform BAX-beta, exclusively transcribed in apoptotic cells, was negatively correlate
158 ification pipeline and reveal that enhancers transcribed in breast cancer cells direct critical gene
159 iguingly, the G84E variant allele was rarely transcribed in carriers, suggesting that HOXB13 expressi
162 tions as a long-distance mRNA signal that is transcribed in leaves and moves into roots and stolons t
163 immune cell subsets, we found that BCMA was transcribed in plasmacytoid dendritic cells (pDCs) in bo
164 identified a retrotransposon that is highly transcribed in roots and whose spliced transcript consti
165 ication requires that some of the viral RNAs transcribed in the cell nucleus be exported to the cytop
167 dization (smRNA FISH), we show that egl-1 is transcribed in the mother of a cell programmed to die an
169 infection, despite the gene being primarily transcribed in the vector with a transient expression in
170 promoter regions are frequently divergently transcribed in vivo, but it is unknown whether the resul
171 arch has revealed that most of the genome is transcribed into a broad array of noncoding RNAs, rangin
172 e same strand of a bacterial genome that are transcribed into a single mRNA molecule under certain co
173 meres that all alpha-satellite sequences are transcribed into chromatin-bound RNAs and are required f
175 losed inside a capsid shell, must be reverse transcribed into double-stranded DNA and released from t
176 ll entry, the RNA genome of HIV-1 is reverse transcribed into double-stranded DNA that ultimately int
177 tron retention (IR) occurs when an intron is transcribed into pre-mRNA and remains in the final mRNA.
179 es, we show that defective proviruses can be transcribed into RNAs that are spliced and translated.
184 f the SPbeta bacteriophage that specifically transcribes its late genes, and thus represents a novel
187 recombination in the context of an actively transcribed locus in Saccharomyces cerevisiae, we tested
188 cial tethering to the nuclear periphery of a transcribed locus suppressed R loops in mlp1 cells.
189 alian genomes contain thousands of loci that transcribe long noncoding RNAs (lncRNAs), some of which
191 determine if stress affects mitochondrially transcribed mRNA (mtRNA) expression, we exposed adult ma
192 stability and low immunogenicity to in vitro transcribed mRNAs, thereby facilitating expression of th
194 resence of "defective" proviruses capable of transcribing novel unspliced HIV-RNA (usHIV-RNA) species
196 , especially between regions that are highly transcribed or contain super-enhancers, providing a leve
199 ming catalyst region can be removed from the transcribed peptide by peptidases, artificial and biomac
200 east tumorigenesis, the fraction of actively transcribed Pol III genes increases reaching a plateau d
201 that many EFs crosslink to RNA emerging from transcribing Pol II in the yeast Saccharomyces cerevisia
204 es transcription by increasing the number of transcribing polymerases and thus the amount of mRNA syn
205 ana The intron increased expression from all transcribed positions but had no effect when upstream of
209 iting P-TEFb onto acetylated histones in the transcribed region of the gene and regulates adipocyte d
213 polymerase II results in H3K4me2 throughout transcribed regions and similarly extended H3K4me3 on hi
214 MT3A occupancy and mCA deposition within the transcribed regions of genes is negatively regulated by
216 ltransferase DNMT3A transiently binds across transcribed regions of lowly expressed genes, and its bi
217 ed 635 novel protein-coding genes, 508 novel transcribed regions, 5178 non-coding RNAs, and 35 846 sm
218 if present at replication forks or actively transcribed regions, may interfere with DNA replication
219 Since disease-causing CAG repeats occur in transcribed regions, our results suggest that R-loop-med
225 s a chromatin remodeller, which localizes at transcribing regions to promote RNAPII transcription.
226 of mRNA-encoding genes, including the highly transcribed ribosomal protein- and glycolytic enzyme-enc
227 is used to transfect cells, and barcodes in transcribed RNA are quantified by high-throughput sequen
229 down resulted in reduced binding of actively transcribing RNA polymerase II to the endogenous Asc gen
234 identify the specific loci that are actively transcribed separate from the excess of L1-related seque
235 basis of the gene encoding nuclear internal transcribed sequence (ITS) and mitochondrial cox1 Restri
236 transcribed and only a small portion of the transcribed sequences belongs to protein coding genes.
238 ings indicate that the majority of genes are transcribed simultaneously during the trophozoite stage
239 xaptation into gene regulatory elements, how transcribed SINE RNA impacts transcriptional and post-tr
240 entified an additional HBoV1 gene, bocavirus-transcribed small noncoding RNA (BocaSR), within the 3'
242 ce that any of the nonnative rDNA units were transcribed; some showed indications of having been sile
245 bacterial 16S rRNA gene and fungal internal transcribed spacer (ITS) copy numbers and extracellular
246 DNA barcoding of nuclear ribosomal internal transcribed spacer (ITS) of the rRNA gene with fungal sp
249 The genetic markers used were the internal transcribed spacer (ITS) region, and fragments of the be
250 heir origin was traceable via their internal transcribed spacer (ITS) sequence to five distinct Panic
252 arkers used for sequencing were the internal transcribed spacer (ITS), a portion of the nuclear large
255 nventional PCR amplification of the internal transcribed spacer 2 (ITS2) region (ITS2-PCR) followed b
256 exit, and the domain including the internal transcribed spacer 2 (ITS2) that separates 5.8S and 25S
258 g amplicon sequencing of the fungal internal transcribed spacer 2, we studied the root and rhizospher
259 biogenesis complexes assist the 5' external transcribed spacer and U3 small nucleolar RNA in providi
262 h mitochondrial (cox1) and nuclear (internal transcribed spacer) DNA data from the Schistosoma eggs o
265 ermutation was increased specifically on the transcribed strand from mu-gamma joins, indicating that
270 3 chromatin binding and expression of highly transcribed target genes like MYC, PIM1, MCL1, CD30, IL2
272 ckdown of the H3K27 demethylase ubiquitously transcribed tetratricopeptide repeat X chromosome suppre
274 aggressive in the two variant carriers that transcribed the variant allele compared to the five that
279 While this implies that the intron must be transcribed to increase expression, the TSS changed when
280 with a large fraction of RNA polymerase III-transcribed tRNA genes, independent of hormone treatment
286 mammalian adaptive immunity through reverse-transcribed vDNA circles and the systemic dissemination
287 ructured interviews were digitally recorded, transcribed verbatim and analysed using a qualitative da
292 was trapped in these factories and served to transcribe viral genomes, which coincided with an overal
296 the gene dunk, which we show is transiently transcribed when cellularization starts and functions to
297 es demonstrate that MHC-A alleles are highly transcribed, whereas MHC-C alleles, when present, are tr
298 t in a transcriptionally repressed state was transcribed with 12 pure proteins (80 polypeptides): RNA
301 However, those episomes that were being transcribed would spontaneously aggregate to form transc
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