ライフサイエンスコーパス: transcript

1 odon besides the canonically spliced OsPCS2a transcript.

2 hen a DNA duplex is invaded by a nascent RNA transcript.

3 sed by Bre5-Ubp3 associated with the nascent transcript.

4 with the expression of the full-length GAD1 transcript.

5 c pool before initiating anew on a different transcript.

6 ed transcripts, and position bias within the transcript.

7 ing multiple sequencing fragments along each transcript.

8 leads to an increase in splicing of the PTC7 transcript.

9 x genes by expressing 12 gRNAs from a single transcript.

10 be linked to any editing defects in the nad2 transcript.

11 f a subset of heat shock-induced readthrough transcripts.

12 that minimizes pre-ribosomal RNA (pre-rRNA) transcripts.

13 (IL-2), IL-4, and IL-10 messenger RNA (mRNA) transcripts.

14 rement of the order of splicing within human transcripts.

15 chimeras and number of recovered full-length transcripts.

16 m's transcriptome, the sum of all of its RNA transcripts.

17 disturbed in interferon- and IRF8-regulated transcripts.

18 rk flow algorithms to select the most likely transcripts.

19 the interaction of ALKBH5 with FOXM1 nascent transcripts.

20 s must currently be compared to thousands of transcripts.

21 was used to characterize dendritic cell (DC) transcripts.

22 rocessed structural data across thousands of transcripts.

23 ore strongly with MMBGX for highly expressed transcripts.

24 h may trigger phasiRNAs from numerous kinase transcripts.

25 RARA by reducing m(6)A levels in these mRNA transcripts.

26 coverage and number of recovered full-length transcripts.

27 the expression levels of 81% of non-measured transcripts.

28 lts in nonsense-mediated decay of the mutant transcripts.

29 teracting exclusively with nonpolyadenylated transcripts.

30 s4B typically representing 60-99% of all Ras transcripts.

31 Metastasis-associated lung adenocarcinoma transcript 1 (MALAT1) is a broadly expressed lncRNA invo

32 ), metastasis-associated lung adenocarcinoma transcript 1 (Malat1), in ischemic stroke outcome.

33 The interaction between Ig-like transcript 3 (ILT3), a marker of tolerogenic dendritic c

34 tative functions could be assigned to 35,029 transcripts (35.52%) based on BLAST searches against ann

35 Expression levels of four novel GAD1 transcripts (8A, 8B, I80 and I86) showed a lifespan traj

36 ictions with target site accessibilities and transcript abundance estimates.

37 By evaluating allele-specific transcript abundance in the F1 hybrids, we were able to

38 Higher transcript abundance of PsACS and PsACO in the ovaries,

39 Strawberry simultaneously estimates the transcript abundances and corrects for sequencing bias t

40 The observed patterns of transcript abundances for genes involved in ammonium ass

41 Lastly, transcript abundances indicated that cold-related signal

42 e role of COPT2 in Au transport based on the transcript accumulation of COPT2 under Au exposure.

43 Moreover, the analysis of transcripts accumulation during the cork growth season s

44 Segment 7 produces two major transcripts: an unspliced mRNA that encodes the M1 matri

45 Transcript analyses found that CA1 messenger RNAs were s

46 ransgenic expression of AtHEMN1 Promoter and transcript analyses indicated that AtHEMN1 is expressed

47 RNA transcript analyses of erythroid cells from controls and

48 t be detected by a traditional one-locus/one-transcript analysis approach.

49 Morphological and transcript analysis of these cultures indicates lymphoid

50 y studies of peripheral lymphocytes and CLN3 transcript analysis with polymerase chain reaction ampli

51 om Salmonella 5'-leader of the ribosomal RNA transcript and has a 'stem' structure-containing precurs

52 sed aberrant splicing of the endogenous LGI4 transcript and in a cell-based assay impaired the secret

53 WACNA identified the interplay between transcript and metabolite subnetworks linked to lipid me

54 MSI2 is physically associated with the BCAT1 transcript and positively regulates its protein expressi

55 s with higher GC content exhibited increased transcript and protein accumulation.

56 Here, we confirmed KCNE3 transcript and protein expression in mouse skeletal musc

57 bition of mTORC1 with rapamycin induces PIM3 transcript and protein levels in a variety of settings.

58 l inorganic carbon concentration at both the transcript and protein levels.

59 regulator of CaN 1 (RCAN1) in the DRG at the transcript and protein levels.

60 w-FISH for single-tube analysis of IFN-gamma transcript and protein profile to simultaneously study t

61 tive RT-PCR and ELISA were used to determine transcript and secreted cytokine levels.

62 Amlexanox increased COL7A1 transcript and the phosphorylation of UPF-1, an RNA heli

63 Chdh transcripts and CHDH protein were expressed in oocytes.

64 YTHDF2 binds to viral transcripts and differentially mediates their stability.

65 ssociated with 1710 differentially expressed transcripts and genes from 1599 genes (DEGs; false disco

66 Only a small number of leaf transcripts and metabolites were changed in response to

67 otein production, and therefore simultaneous transcripts and protein measurement are essential for th

68 eased the diversity of nirK and typical nosZ transcripts and resulted in taxonomic shifts among the t

69 identification of V. v. sylvestris exclusive transcripts and the characterization of differential gen

70 changes in the abundances of nuclear-encoded transcripts and thus presumably reflect posttranscriptio

71 for most of the targets except for the matR transcript, and inhibitory, for which glutamate is dispe

72 Pdx1 deficiency led to decreased Atf5 transcript, and primary islet ChIP-sequencing localized

73 ion, functional classification of methylated transcripts, and position bias within the transcript.

74 te array produces a unique set of non-coding transcripts, and RNAs present at active centromeres are

75 alter the sequence of the 3'UTR of targeted transcripts, and we focus on one cell type (monocytes) a

76 Alternative splicing of CA transcripts appears common; consequently, the number of

77 alternative promoter activity, CGI-initiated transcripts are associated with signals of stable elonga

78 We found that individual transcripts are expressed with a very high degree of tem

79 els of mRNA translation usually presume that transcripts are linear; upon reaching the end of a trans

80 map of m(6)Am we find that m(6)Am-initiated transcripts are markedly more stable than mRNAs that beg

81 ther, these findings indicate that TET2 gene transcripts are regulated similarly to EBV type III late

82 cleavage and polyadenylation while noncoding transcripts are terminated through the Nrd1-Nab3-Sen1 (N

83 essed in primary mouse motoneurons and their transcripts are translocated into axons.

84 es, we revealed numerous alterations of host transcripts associated with inflammatory and acute-phase

85 Moreover, among the transcripts associated with ZFP804A, a SZ risk gene, neu

86 ed to the alteration of steroidogenesis gene transcripts at nanogram per liter concentrations.

87 /C, while the nuclear sequestration of these transcripts at prophase appears to protect cyclins from

88 ChimeRScope that accurately predicts fusion transcripts based on the gene fingerprint (as k-mers) pr

89 er interesting question is whether B-derived transcripts become functional products.

90 nitored the behaviors of X-linked non-coding transcripts before and after XCI.

91 h increased susceptibility for abnormal gene-transcript behavior by jointly analyzing DNA-methylation

92 peline that not only predicts the off-target transcripts but also computes the off-targeting potentia

93 successful in discriminating lowly expressed transcripts, but IsoformEx and RSEM correlate more stron

94 changes enhanced the production of full-size transcripts by suppressing abortive loss of short RNAs.

95 CYCB transcripts can be exported and translated; however, CDC

96 ciation of CD16a-inducible NK cell-selective transcripts CD160 and XCL1 with biopsies with AMR provid

97 an SC protein that promotes proofreading by transcript cleavage in elongation complexes backtracked

98 ovel transcripts (PNTs) and completely novel transcripts (CNTs) (novelty score >/= 70%) revealed that

99 Transcript co-expression is regulated by a combination o

100 We identify temporal and functional transcript co-variance that associates 5024 unnamed gene

101 xpression (CAGE) data, we integrate multiple transcript collections to generate a comprehensive atlas

102 , we have concluded that the majority of the transcripts contain multiple translationally active ORFs

103 using dual-fluorescence detection of nascent transcripts containing 5' MS2 and 3' PP7 RNA stem loops.

104 and exosomes, among the most abundant being transcripts containing a 5' terminal oligopyrimidine (5'

105 1683 putative transcription factors of which transcripts corresponding to WRKY TFs were the most abun

106 tive RNA-seq expression levels into relative transcript counts without the need for experimental spik

107 atic transcription, and couple RNAi-mediated transcript degradation to the establishment of H3K9me do

108 irect repressor of a placental-specific Igf2 transcript (designated Igf2-P0) in mice.

109 Analysis of RNA transcripts detected fusion of the HPV/Myc genes, arisin

110 NGS revealed that of 15 different classes of transcripts detected, 4 circulating exosomal sequences w

111 actors play a fundamental role in regulating transcript diversity both temporally and spatially.

112 class, termed downstream of gene-containing transcripts (DoGs), was reported to result from transcri

113 mouse maternal transcriptome by eliminating transcripts during oocyte growth.

114 ripts are linear; upon reaching the end of a transcript each terminating ribosome returns to the cyto

115 Upon UV irradiation, a slowdown of transcript elongation and restriction of gene activity t

116 Transcript elongation factors (TEFs) are a heterogeneous

117 p of proteins that control the efficiency of transcript elongation of subsets of genes by RNA polymer

118 Mitotic accumulation of CDC20 and CCS52B transcripts enables the timely and rapid activation of A

119 ck hepatitis virus), and an intron-retaining transcript encoded by the cellular NXF1 gene.

120 tive splicing of Intron-2 generates a longer transcript encoding a protein named AtC30Y, a polypeptid

121 have strikingly increased levels of maternal transcripts encoding ceramide synthase 2b (Cers2b), and

122 sm is steroid hormone regulated synthesis of transcripts encoding leptin.

123 tively constant throughout the OMZ, although transcripts encoding sulfur-utilizing proteins, includin

124 The expression profiles of 39 candidate transcripts encoding the key enzymes for secoiridoid bio

125 amino acid change, in the mitochondrial nad4 transcript, encoding for a complex I subunit, was identi

126 by expression of endothelial cell-associated transcripts (ENDATs), that may be attenuated through com

127 While all viral transcripts examined so far have been found to be extens

128 racterization of previously un-annotated RNA transcripts expressed by the spirochete during murine in

129 phe nucleus and defined a discrete subset of transcripts expressed in these projecting neurons, which

130 This study is the first to characterize transcript expression in both female and male hamster br

131 for coronary heart disease, along with CXCR4 transcript expression in human atherosclerotic plaques.

132 na) RNA interference (RNAi) seeds with lower transcript expression of CYSTATHIONINE gamma-SYNTHASE (A

133 Transcript expression of these genes and Fboxo32 (MAFbx)

134 We analyzed the mRNA levels for 36,778 transcript expression traits (probes) from 2,765 individ

135 We documented transcript expression using Tag-seq and RNA-seq in femal

136 NAs were differentially expressed, including transcripts for 3 genes previously associated with cereb

137 ponse 4.5 (MR4.5) with undetectable BCR-ABL1 transcripts for the 2 preceding years at least were elig

138 The aberrantly spliced adgra2 transcript found in ouchless mutants encodes a receptor

139 truncation cassette inserted to prevent RNA transcripts from elongation through KvDMR1.

140 r RNAs were significantly more abundant than transcripts from the CA2 gene in the leaves of each spec

141 ions, rearrangements, DNA amplifications and transcript fusions and predictive of telomerase activity

142 ative splicing of exon 10 in the tau primary transcript gives rise to protein isoforms with three (3R

143 s thousands of long noncoding RNAs (lncRNAs)-transcripts >200 nucleotides long that do not encode pro

144 Among these, 50 SNPs were found within 39 transcripts highly homologous to 49 publically-searched

145 SCN-enriched transcripts identified in this study provide novel insig

146 revealed the highest levels of the Ss-riok-2 transcript in free-living females and parasitic females.

147 SENP7S is the predominant SENP transcript in human mammary epithelia but is significant

148 We also collected the whole-transcript in vitro and in vivo SHAPE-MaP for human beta

149 levels of Myogenic Differentiation 1 (MyoD) transcript in vivo, whereas MyoD protein is absent.

150 ally interacted with anti-proliferation gene transcripts in a Cnot3-dependent manner, and promoted th

151 the same chromosome produce discrete sets of transcripts in cis.

152 d intron 2-retained SRSF6 (SRSF6(+intron 2)) transcripts in CRC tissues and cell lines.

153 differential ratios of alternatively spliced transcripts in indica rice under Cd stress, and plays ro

154 dreds of trans-eQTLs each affect hundreds of transcripts in lymphoblastoid cell lines across three Af

155 adenosine deaminase acting on RNA type 2) to transcripts in mammalian cells.

156 channel alpha subunits revealed NaV 1.7 mRNA transcripts in nearly all retrogradely labelled colonic

157 s been identified as one of the most-reduced transcripts in several target organs and is hypothesized

158 ize and quantify adenosine-to-inosine-edited transcripts in situ.

159 ish pri-miRNAs from other hairpin-containing transcripts in the genome are incompletely understood.

160 also increased CD4, CD8, IFN-gamma, and PD-1 transcripts in the TG of latently infected mice.

161 s to create over 50 physiologically relevant transcripts in two size classes (1.8 kb and 4 kb).

162 rsor mRNA splicing of P-transposable element transcripts in vivo, leading to the production of the no

163 RNA promiscuously, with thousands of target transcripts in vivo.

164 They induce ROS-regulated transcripts including for genes implicated in pathogen d

165 ng the reliable detection of cancer-specific transcripts including the androgen-receptor splice varia

166 sion microarrays, each targeting over 12 000 transcripts, including an overlapping subset of 8331 ort

167 by RNAseq, containing over 140,000 annotated transcripts, including metabolic and adipocytokine genes

168 monstrated functional correlates in SCN gene transcripts; inclusion of Cacna1c exon 7, and also exclu

169 hanges in 29 of 63 ion channel/pump/connexin transcripts, indicating a pleiotropic effect on the elec

170 e find that the lncRNA and promoter-spanning transcript interaction are based on a combination of str

171 Characterization of novel transcripts into partially novel transcripts (PNTs) and

172 tes mRNA processing and the stabilization of transcripts involved in homologous recombination in resp

173 The IFN-inducible genes included 3 transcripts involved in tryptophan catabolism (IDO1, KMO

174 Escherichia coli mRNAs that 35%-50% of each transcript is diphosphorylated.

175 During saprophytic growth, a single long transcript is produced with small upstream open reading

176 Accurate annotation of genes and their transcripts is a foundation of genomics, but currently n

177 anscriptional processing and fate of nascent transcripts is coordinated by transcription elongation f

178 quires the appropriate content and dosage of transcripts is not fully understood.

179 is the first tool for detecting significant transcript isoform switches in time-series data.

180 2/2118 targeted locus gave rise to four main transcript isoforms through AS/APA, and diverse phasiRNA

181 h causes the scaled expression levels of all transcript isoforms to follow the same Weibull extreme v

182 C3 gene expresses both coding and non-coding transcript isoforms with opposite effects on transcripti

183 n zinc-deficient cells, RTC4 RNA with longer transcript leaders are expressed that are not efficientl

184 d most commonly in ecDNA, thereby increasing transcript level.

185 udied in terms of their in vitro and in vivo transcript levels after different treatments and their b

186 insights into the relationship between gene transcript levels and HLA ligand presentation.

187 PEPCK and G6Pase transcript levels are downregulated in hepatocytes from

188 1 genes exhibited significant differences at transcript levels by microarray analysis were identified

189 Furthermore, buds with high BRC1 transcript levels can be active.

190 High cytokine transcript levels correlated with increased protein prod

191 However, increased transcript levels do not always translate into protein p

192 o achieve and maintain undetectable BCR-ABL1 transcript levels for at least 2 years remain disease-fr

193 Changes in transcript levels in vts1Delta cells established the reg

194 Specifically, jun-1 transcript levels increased in wild-type animals post ga

195 Sse(A+) SpeB(A+) variants had transcript levels of CovRS-controlled virulence genes co

196 e dissected in greater detail the changes in transcript levels of elements of several signaling pathw

197 Transcript levels of glutaminolytic factors were quantif

198 We also found that transcript levels of MSN2/MSN4 are increased in glucose-

199 sistent with substantial upregulation of the transcript levels of specific pathogen-responsive genes.

200 Both metabolite and transcript levels were higher in skin than in flesh and

201 els of H2A.Z in the gene body correlate with transcript levels.

202 Small interfering RNA was used to decrease transcript levels.

203 pression resulted in inverse changes in WWOX transcripts levels with siRNA interference eliminating P

204 nditions via the production of an intergenic transcript linking neuronal and immune Fpr genes.

205 gulate the vast majority of protein-encoding transcripts, little is known about how miRNAs themselves

206 RNAs can alter gene expression by regulating transcript localization, stability and/or translation, w

207 factor required for tapetal differentiation; transcripts localize initially to the precursor secondar

208 Transcripts mapping to these genomes increased from <0.3

209 n contrast, increased level of FLG antisense transcripts measured by probe A_21_P0014075 was associat

210 onstituting approximately 99% of all beta-CA transcripts measured.

211 istatin-like 1 (FSTL1) protein from a single transcript; miR-198 expression in healthy skin is down-r

212 ies from 113 datasets and constructed 48 359 transcript models of protein-coding genes in eleven tiss

213 e ability to improve quantification by using transcript molecule counting with unique molecular ident

214 In order to succeed, retrotransposon transcripts must identify the subset of nuclei that will

215 This is because readthrough transcripts now extend into downstream genes and are sub

216 tions were updated using 111,000 full-length transcripts obtained by single-molecule real-time sequen

217 The accumulation of LjIpt2 and LjLog4 transcripts occurs independent of the LjLhk1 receptor du

218 is loss results in the accumulation of toxic transcripts of Alu transposable elements, which activate

219 redicting the risk for AMR by measuring mRNA transcripts of AMR-associated genes in plasma exosomes f

220 Transcriptome analysis of over 40000 transcripts of genes and analysis with PFSnet subnetwork

221 Transcripts of Kcnj2 (Kir2.1), Kcnj4 (Kir2.3), Kcnj14 (K

222 The presence of cleaved transcripts of miRNA-targeted ARFs in C. roseus cells wa

223 Transcripts of representative ethylene-responsive and ri

224 show that levels of these acetophenones and transcripts of the gene responsible for their release is

225 The transcripts of the interviews and focus groups were anal

226 rinted within promoter gene sequences before transcript or protein interactions.

227 Antisense transcripts originate either at gene promoters or within

228 hythmicity in several putative primary piRNA transcripts overlapping antisense transposons.

229 es fragments per kilobase million (FPKM) and transcript per million (TPM) levels for genes and isofor

230 on of novel transcripts into partially novel transcripts (PNTs) and completely novel transcripts (CNT

231 re confirmed by RT-qPCR Corresponding target transcripts, predicted in silico and validated by RT-qPC

232 8 vector that expressed the primary miR-122 transcript (pri-MIR122, to overexpress MIR122 in hepatoc

233 Primary microRNA transcripts (pri-miRs) are cleaved by Microprocessor, a

234 tions are enriched in exons and are added to transcripts prior to splicing.

235 prisingly, expression of sense and antisense transcripts produced by NAT pairs is significantly corre

236 ar addition led to a significant increase in transcript production among microbial species that are s

237 modulated genes confirmed and validated sHSP transcript profile patterns.

238 This behavior is reflected in the transcript profiles of young and old NPCs.

239 , and although none has been cloned to date, transcript profiling experiments have identified candida

240 nd low concentrations of CO2 at the level of transcripts, proteins and enzyme activity.

241 nal analysis of the differentially expressed transcripts/proteins suggested that enhanced capacity fo

242 Transcript quantification revealed that Lys12 was highly

243 of functional categories identified enriched transcripts related to stress responses and apoptosis at

244 Major satellite repeat transcripts remain chromatin-associated and have a secon

245 ate targeting of wild-type and point-mutated transcripts represents an important limitation.

246 d residues critical for Tbx3, Klf4 and Esrrb transcript repression, cell-cell contact abrogation, cel

247 a-globin combined with decreased beta-globin transcripts resulting in gamma-globin rising to 90% of t

248 Composite measures across all transcripts revealed a significant effect of region, wit

249 he translational level, by properties of the transcript's sequence.

250 hologues selected on the basis of the murine transcript signature allowed prediction of response stat

251 e mutations affect splicing at a global- and transcript-specific level, critical questions about the

252 mulations reveal a bias toward a particular, transcript-specific order of intron removal in human gen

253 nd to be short yet encode significantly more transcripts than expected based upon their lengths, incl

254 S2 produces an alternatively spliced OsPCS2b transcript that bears the unusual premature termination

255 encodes the M1 matrix protein and a spliced transcript that encodes the M2 ion channel.

256 of RPs in translating ribosomes and profiled transcripts that are enriched or depleted from select su

257 ns between each pairwise combination of 2469 transcripts that are highly heritable and expressed in w

258 d a biochemical approach to define candidate transcripts that are locally translated in astrocyte pro

259 disease, gene analysis was performed to show transcripts that are reciprocally regulated by EMP2 leve

260 th lower protein levels and intron-retaining transcripts that escape nonsense-mediated decay are not

261 d the way for the identification of effector transcripts that underlie the phenotype, and genetic or

262 imal to A1 caused a 10-fold reduction in all transcripts that utilized A1.

263 of when and where in the life of a pre-mRNA transcript the modifications are made.

264 distinct ways on their own and each other's transcripts to create a network of autoregulatory and cr

265 on, where the accumulation of incomplete HIV transcripts triggers cell death.

266 n different genomic regions and of different transcript types (i.e., protein coding, noncoding, and p

267 ilt differential expression library of their transcripts under control and drought conditions.

268 Among new insights, transcript versus DNA methylation correlations revealed

269 Each interview transcript was reviewed independently by 2 epileptologis

270 tient samples, increased levels of the Carlr transcript were detected in the cytoplasm, alongside ele

271 METDelta14 mutation and transcript were most common in lung adenocarcinoma.

272 In contrast, several novel transcripts were altered in injured nociceptors, and the

273 Transcripts were analysed to identify themes.

274 From this dataset 81,064 transcripts were annotated to V. v. vinifera reference t

275 Many of these particular transcripts were associated with survival and showed lon

276 Photosystem I transcripts were constitutively expressed at all time po

277 Ov-tsp-2 and tsp-3 transcripts were detected in all developmental stages of

278 ound metallothionein (MT, particularly MT-I) transcripts were dramatically up-regulated.

279 riched for mitotic processes and upregulated transcripts were enriched for cell differentiation.

280 Downregulated transcripts were enriched for mitotic processes and upre

281 set of these clusters of ethylene-responsive transcripts were enriched in targets of EIN3 and ERFs.

282 A total of 14,326 gene transcripts were found in chicken thrombocytes across al

283 Li3CARS transcripts were found to be highly abundant in leaves (

284 In biopsies, 8 of the top 30 CD16a-inducible transcripts were highly associated with AMR (P < 5 x 10)

285 More than 5,000 differentially expressed transcripts were identified from each genotype.

286 AOA genes and transcripts were primarily affiliated with Thaumarchaeot

287 lysis demonstrates that nodule leghemoglobin transcripts were significantly more abundant in soybeans

288 Thirteen transcripts were validated by qPCR to confirm cell speci

289 t with a 5' UTR-containing promoter-spanning transcript, which is then followed by the recruitment of

290 st that dissection of the functions of these transcripts will most likely inform pathomechanism.

291 De novo assembly produced 67,911 transcripts with a high depth of coverage.

292 vo sequence assembly, yielding 98,613 unique transcripts with an N50 of 1,085 bp.

293 urther strengthening the relationship of the transcripts with disease.

294 A total of 55,532 transcripts with lengths over 200 bp were de novo assemb

295 ndependent promoters, pr1-4, that produce 21 transcripts with nine distinct open reading frames (ORFs

296 However, ZIKV shared <15 significant transcripts with other flavivirus infections.

297 three mRNA isoforms account for > 94% of all transcripts, with increased transcription of the entire

298 alter the SRSF10-dependent splicing of HIV-1 transcripts, with minor effects on cellular splicing, su

299 nocytes) and on a small set of highly edited transcripts within it to show that editing alters gene e

300 esponse to expression of X inactive-specific transcript (Xist) RNA during the earliest stages of X in