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1 nd by as much as 56.3% and 57.8% relative to Transpose.

2 lassical and by as much as 75.2% relative to Transpose.

3 e are transpositionally competent but rarely transpose.

4 ty of Tn7 elements with two Tn7 left ends to transpose.

5 lems up to 40% larger than those solvable by Transpose.

6 and the "Mutation" labels in Figure 1b were transposed.

7 an and zebrafish is extensively inverted and transposed.

8 ation suggests that Helitrons continue to be transposed.

9 y, in that the amino and carbonyl groups are transposed.

10 but gene orders were frequently inverted and transposed.

11 e vast majority of Ty elements have recently transposed.

12 cis-acting element was altered, deleted, or transposed.

13 recently amplified and may still be actively transposing.

14 We observed that transposing 13 bp of identity from HS1 or HS3 to a new l

15 These sequences also function when transposed 3'of the Delta RPA1 coding sequence.

16 completed because of an inability to nasally transpose a previously operated-on LR muscle.

17 tion that prevented cleavage (GQE367-369NET) transposed a motif (NET291-293) that is glycosylated in

18 charomyces pombe switches its mating type by transposing a copy of unexpressed genes from the respect

19 We have developed MCScanX-transposed, a software package to detect transposed gene

20 were further tested for linkage between the transposed Ac and the mutant phenotype, and instability

21 ripts in mutant leaves, and insertion of the transposed Ac element 17 bp upstream of the start of tra

22 ted for the isolation of DNA adjacent to the transposed Ac elements (tac sites).

23 ssical and molecular genetic techniques, 158 transposed Ac elements (tr-Acs) were distributed through

24 The majority of transposed Ac elements are linked to either the bz or th

25 o be tagged as they were tightly linked to a transposed Ac, and somatic and germinal reversion was as

26 nt locus was shown to be closely linked to a transposed Ac, and therefore was likely to be tagged.

27 were not tagged as they were not linked to a transposed Ac.

28 Transpose achieves run time and energy efficiency at the

29 ng elements, which are all nearly identical, transpose actively in an indica cell-culture line.

30 -encoding elements (called Pong), which also transpose actively in the same cells.

31 These ERV families are primate-specific and transposed actively near the time when the New World and

32 lications where the most recent duplications transpose adjacent to the centromere.

33 st to the human gfpt sequences, Tn7 does not transpose adjacent to the gfa-1 sequence, the glmS analo

34 These elements can efficiently transpose after expression of transposase from an approp

35 , there may be small DNA fragments that have transposed and are no longer in syntenous positions.

36 Ac-st2 autonomously transposes and catalyzes somatic excision of Ds elements

37 One IS3 family member, IS629, actively transposes and proliferates in EHEC O157:H7 and enteroto

38 ison to those of other vertebrates; they are transposed anteriorly and enlarged, and lie directly ven

39 cific fashion in M. smegmatis whereas Tn5367 transposed apparently randomly in M. phlei, Bacille Calm

40 ly transposed with the oldest element having transposed approximately 3.8 million years ago.

41 rterialization occurs when a vein segment is transposed as a bypass graft into the arterial circulati

42 Therefore, Ty1 multimers that transpose at a high frequency in sgs1Delta mutants are f

43 e able to isolate end sequence variants that transpose at a higher frequency than the natural ends (O

44 These mini-mariner elements transpose at high frequency in M. acetivorans to random

45 table in Arabidopsis, despite its ability to transpose at high frequency in response to a strong tran

46 Our data demonstrate that Hermes elements transpose at high rates in D. melanogaster and may be an

47 ites in intronless alleles, group II introns transpose at low frequency to ectopic sites that resembl

48 ognize the corresponding human sequence, and transpose at that site.

49 ys of development indicated that mariner had transposed at high frequency into the chicken genome.

50 Finally, we show that specific gene families transposed at specific points in evolutionary time, part

51 bind differently, with their lysine residues transposed at the binding patches.

52 to a suicide vector, the modified ISPpu12-Km transposes at high frequency, often in multiple copies,

53 d' Hox-like genes; these genes may have been transposed away from an expanding cluster.

54 ylogenetic analyses show that ves1 genes are transposed between loci routinely, whereas ves2 genes ar

55 on sequence IS903 has the unusual ability to transpose both replicatively and non-replicatively.

56 7 elements containing two Tn7 right ends can transpose, but elements with two Tn7 left ends cannot.

57 ow that TEs are unexpectedly reactivated and transpose, but only in the pollen vegetative nucleus, wh

58 P elements transpose by a cut-and-paste mechanism.

59 are eukaryotic mobile genetic elements that transpose by reverse transcription of an RNA intermediat

60 eukaryotic DNA transposons, Helitron, which transpose by rolling-circle replication.

61 telomeric and nontelomeric, non-LTR elements transpose by target-primed reverse transcription, and th

62 Because they transpose by target-primed reverse transcription, each e

63 e voltage dependence of tau(deact) is simply transposed by approximately 40 mV, without a concomitant

64 in a functional assay for the ability to be transposed by MuA transposase.

65 ion, group II introns could have spliced and transposed by reverse splicing by using ubiquitous RNA c

66 far belong to a single category of elements transposed by the so-called "cut-and-paste" mechanism.

67 The maize Ac/Ds transposable element (TE) transposes by a "cut and paste" mechanism.

68 le to self-dissociate from product DNAs; Tn5 transposes by a conservative "cut and paste" mechanism;

69 eats and like other elements of this type it transposes by a cut and paste mechanism, inserts at TA d

70 Phage Mu transposes by two distinct pathways depending on the spe

71 the Bill element, indicates that it probably transposes by way of a DNA intermediate and requires fun

72 MCScanX-transposed can be also used for integrative analysis of

73 -designed approach for electronic paper that transposes coloured ink in front of or behind a white mi

74 mPing in A. thaliana is usually precise, and transposed copies usually insert into unlinked sites in

75 Analysis of three full-length, recently transposed copies, called mysTR elements, revealed gag,

76 rse transcription and integration of a newly transposed copy of L1, whereas the exact role of ORF1p i

77 telomere-associated retrotransposons, which transpose directly to the chromosome ends and thereby pr

78 al operon guided the discovery that bacteria transpose DNA segments into new genome sites.

79 NA followed by natural transformation of the transposed DNA, large random transposon mutant libraries

80 Alternatively, disintegration removes transposed donor DNA from the intermediate.

81 occur in a bacterial cell if this operon has transposed downstream of a promoter on the bacterium's c

82 d to enrich for plants that only contained a transposed Ds element.

83 observed two mutant phenotypes in which the transposed Ds elements co-segregate with the new phenoty

84 Transposed Ds elements in plants lacking the AcTPase tra

85 plants showed that approximately 75% of the transposed Ds elements reinserted into linked locations

86 cus resulting in the recovery of independent transposed Ds insertions in approximately 4.5% of progen

87 Insertion sites of transposed Ds-ATag elements were identified through ther

88 analyzed to identify plants segregating for transposed Ds-bar elements.

89 ation site in single-copy plants showed that transposed Ds-bar inserted into single- or low-copy regi

90 rom progeny of F(2) plants with single-copy, transposed Ds-bar remained completely stable.

91 Transgene expression in F(2) plants with transposed Ds-bar was 100% stable, whereas only 23% of F

92 ent-related genes; WGD, tandem, proximal and transposed duplicates; and singleton genes.

93 Because the 5' end of each newly transposed element forms the end of the chromosome until

94 29 transgenic plants were found to contain a transposed element while lacking any superfluous T-DNA s

95 sequences in combination with other types of transposed elements (SINEs, LINEs, LTRs), even unannotat

96 terminal repeat-derived and LINE1-mobilized transposed elements (Tarsius interspersed elements; TINE

97 Insertion of transposed elements into introns can lead to their activ

98 In inbred ddm1 strains, transposed elements may account, in part, for mutant phe

99 ), especially in gametes that could transmit transposed elements to the next generation.

100 00-bp region lacking DNA methylation, due to transposed elements underrepresented in CpG sequences: a

101 expression levels of genes positioned within transposed elements, the new transformation method may f

102 ploiting a lack of methylation at juxtaposed transposed elements, to bind and poise chromatin for int

103 e germ-line transmission and expression from transposed elements.

104 e epigenetic regulation of non-reference and transposed elements.

105 Within other genomic regions, Minos transposes essentially at random, whereas P or piggyBac

106 The structural and functional integrity of a transposed extended P element was confirmed using molecu

107 That belief was overturned when a transposing F subfamily, T(F), was discovered.

108 Fifteen (23%) of these L1s had transposed flanking DNA with an average transduction len

109 whether a Stowaway-like MITE, termed Minos, transposes following allopolyploidization events in whea

110 ation of target DNA immediately flanking the transposed fragment, a structure like that created by re

111 this genotype indicates that Ds elements can transpose from relatively short extrachromosomal DNA mol

112 vity screening was developed, optimized, and transposed from 200mL to 10L water samples.

113 etermine whether these Yp sequences had been transposed from an autosomal ancestor, we used this trap

114 indicate that the Y copies of RhoA have been transposed from an autosome, followed by subsequent dupl

115 ication (99.4%-99.8% sequence identity) that transposed from chromosome 14 to the most proximal peric

116 enerated strains in which the lac operon was transposed from its normal position on the chromosome to

117 dder that are established when the ureter is transposed from its original insertion site in the male

118 odes a receptor for the sugar trehalose, has transposed from one such tandem cluster of six genes at

119 A recent comparison of a DNA region that was transposed from the X to the Y chromosome 3-4 million ye

120 Transposed gene duplication, a specific form of single-g

121 anX-transposed, a software package to detect transposed gene duplications that occurred within differ

122 roteins involving chromosomal function among transposed genes, suggesting that genetic conflict betwe

123 Using this large catalog of transposed genes, we detected accelerated sequence evolu

124 families, exhibited a median frequency of 5% transposed genes.

125 other gene families were composed largely of transposed genes: NB-LRR disease-resistance genes, genes

126 egions show this proclivity to duplicate and transpose genomic sequence, suggesting at least two diff

127 neurostimulators were implanted to stimulate transposed gracilis or gluteus muscle.

128 perineal sepsis requiring debridement of the transposed gracilis.

129 t ventricle (DILV) or tricuspid atresia with transposed great arteries (TA-TGA).

130 Transposing helices 9 and 10 (10/9 peptide) did not chan

131 ely matches that of a composite LTR found in transposed IAPs previously identified in the C3H strain.

132 ber of a young Alu subfamily, which recently transposed immediately downstream to a T14A11 sequence i

133 In this way DEH-ISPpu12 was shown to transpose in a broad range of Proteobacteria.

134 transposon from a vascular plant reported to transpose in a bryophyte.

135 olecular studies suggest that Ac/Ds elements transpose in a conservative non-replicative fashion; how

136 aize Activator/Dissociation (Ac/Ds) elements transpose in a wide variety of heterologous plants, but

137 m the mariner element Himar1 can efficiently transpose in bacteria in vivo.

138 study investigates a system in which aI1 can transpose in crosses (i.e., in trans).

139 IS607 was found to transpose in Escherichia coli, and analyses of sequences

140 rked with a resistance gene was found to (i) transpose in Escherichia coli; (ii) generate simple inse

141 ility of the D. melanogaster hobo element to transpose in lepidopteran species.

142 we show that Hermes elements can accurately transpose in M. domestica embryos.

143 n transplanted into heterologous species can transpose in organisms ranging from prokaryotes to proto

144 e Drosophila transposable element mariner to transpose in the chicken was tested using a plasmid carr

145 ers of the hAT (hobo, Ac, Tam3) superfamily, transpose in the yeast Saccharomyces cerevisiae, an orga

146 Here, we show that Tn7 can transpose in vitro adjacent to two potential targets in

147 mitted among diverse eukaryotes and can also transpose in vitro in the absence of added cofactors.

148 s-of-function or gain-of-function mutations, transposed in all somatic tissues tested and accelerated

149 The Tn5 derivative transposed in Anabaena at ca. 1-4 x 10(-5) per cell and

150 HimarEm1 and HimarEm2 each transposed in F. johnsoniae, and nonmotile mutants were

151 ement in any organism, but has been recently transposed in H. zea.

152 4001T transposed in M. pulmonis, and Tn4001T transposed in M. arthritidis.

153 Both Tn4001C and Tn4001T transposed in M. pulmonis, and Tn4001T transposed in M.

154 nprecedented resolution, showing that AtMu1c transposed in the Arabidopsis lineage and that transposo

155 nd three-fourths of the genes in Arabidopsis transposed in the Brassicales.

156 nsposon bearing a genetic marker is randomly transposed in vitro in genomic DNA that is then used for

157 Escherichia coli at high frequency and also transposes in E. coli.

158 Intron aI1 transposes in haploid cells at low frequency to target s

159 na tabacum) retrotransposon Tnt1 efficiently transposes in P. patens, being the first retrotransposon

160 5 retrotransposon of Saccharomyces paradoxus transposes in Saccharomyces cerevisiae at frequencies 1,

161 ve the ability to move along chromosomes or "transpose" in the genome.

162 ement lacking most of its internal sequences transposes independently of DBR1.

163 They normally transpose infrequently but are activated in the germline

164 During reproduction, RescueMu transposes infrequently from the initial transgene array

165 The transposed intestinal loop was exposed to 5 Gy fractions

166 minal repeat (LTR) retrotransposons actively transpose into internal, gene-rich regions of chromosome

167 Ty1 elements transpose into random rDNA repeat units and are mitotica

168 bacterial transposon Tn7 can preferentially transpose into regions where chromosomal DNA replication

169 and its isoform IS1002 have been observed to transpose into the bvgAS locus of Bordetella pertussis,

170 Tn4555 preferentially transposed into a 589-bp genomic locus containing a 207-

171 50) gene recently captured by a Helitron and transposed into an Opie-2 retroposon.

172 ment was found between genes except where it transposed into another insertion element.

173 ncineration Directive (EU-WID) (subsequently transposed into IED) and correlations of PM10 with SO2,

174 Cleaved signal ends are also transposed into new sites in DNA, allowing RAG-induced t

175 an array of telomeric retrotransposons that transposed into the centromeric region of the Y chromoso

176 Hotspots can be transposed into the context of a frameshift reversion as

177 t deficiencies of the vein as a conduit when transposed into the coronary arterial circulation.

178 Tn917 transposed into the GAS chromosome at a frequency of (2.

179 Single-copy transposon insertions were transposed into the rat genome by co-injection of plasmi

180 This implies that Tgmr was transposed into the Rps1-k flanking site after the diver

181 (omk), a cyclophilin A (CypA) cDNA has been transposed into the TRIM5 locus, resulting in the expres

182 nt in Drosophila melanogaster preferentially transposes into nearby sites.

183 ruslike element of Saccharomyces cerevisiae, transposes into positions immediately upstream of RNA po

184 t immunity, a process that prevents Tn7 from transposing into target DNAs that already contain a copy

185 MCScanX-transposed is freely available at http://chibba.pgml.uga

186 aparotomy is done to mobilize the spleen and transpose it to a s.c. pocket with its vascular pedicle

187 al evidence suggested that the only actively transposing L1 elements in the modern mouse genome were

188 vestigate the emergence of the two currently transposing L1 lineages, young A's and T(F)'s.

189 nts (our clusters 14 and 15) appears to have transposed late in hominoid evolution.

190 s can, in principle, account for contrasting transposed letter (TL) priming effects, and at the same

191 r of cache misses followed by the algorithms Transpose (Li et al.), ByRow, ByRowSegment, and ByBox (i

192 exclusively full-length elements of actively transposing LINE families, demonstrating the remarkable

193 s used to separate the evolution of actively transposing lineages of a non-LTR element from the fate

194 or which Hajos-Parrish ketone isomers with a transposed methyl group (termed "iso-Hajos-Parrish keton

195 Like MuDR, TED transposes mostly to unlinked sites and can form circula

196 me region in the TIRs of all tested actively transposing Mu elements but binds poorly to the diverged

197 Humans easily recognize "transposed" musical melodies shifted up or down in log f

198 Tn10 transposes nonreplicatively.

199 w focuses on 4'-hydroxymethyl- or nucleobase-transposed nucleosides, nucleotides, and nucleoside phos

200 of all known 4'-hydroxymethyl- or nucleobase-transposed nucleosides, nucleotides, and nucleoside phos

201 s containing nucleobase- or 4'-hydroxymethyl-transposed nucleotides are discussed.

202 s containing nucleobase- or 4'-hydroxymethyl-transposed nucleotides as small oligonucleotide (e.g., h

203 ogen atom, (b) O-neophyl rearrangement which transposes O- and C-atoms of the substituent, (c) fragme

204 lated by Gaussian reduction of the augmented transpose of the stoichiometric number matrix for the sy

205 experience or the tendency to imaginatively transpose oneself into fictional characters.

206 se to many chromosomal sites, HeT-A and TART transpose only to chromosome ends.

207 -LTR retrotransposons, HeT-A and TART, which transpose only to chromosome ends.

208 nsposons, sharing the remarkable property of transposing only to chromosome ends.

209 gene-rich regions of chromosomes but do not transpose onto chromosome ends.

210 erest were placed on the original images and transposed onto compressed images.

211 Activity patterns were transposed onto three-dimensional magnetic resonance ima

212 end of the chromosome until another element transposes onto it, this nonessential sequence can buffe

213 t allows isolation of flies containing newly transposed P elements in the presence of the starting el

214 8-aryl-2'-deoxyguanosine derivatives with a transposed pair of methylene groups self-assemble into h

215 colonies streaked from four independent Tf1 transposed patches under nonselection conditions.

216 ited state of the carbonyl chromophore in a "transposed Paterno-Buchi" reaction is evaluated with atr

217 r representation of the algebra of partially transposed permutation operators and thus explicitly det

218 ocols and belong to the algebra of partially transposed permutation operators.

219 s demonstrate that the gyrase sites from the transposing phages possess unusual properties and emphas

220 (the enophile) to form a new product with a transposed pi-bond.

221 fabrication, and is the first ever colourant-transposing pixel that eliminates the need for ink micro

222 al genes and/or promoter elements within the transposed portion of DNA.

223 ed by 10--12 nucleotides from the 3'-end and transpose precisely between the 5'-A and T-3', with no m

224 -DNAs, we have confirmed that the Ds element transposes preferentially to genetically linked sites.

225 th piggyBac and Tol2 transposons efficiently transpose primordial germ cells.

226 Phage Mu transposes promiscuously, employing protein MuB for targ

227 3 is expressed in cells migrating lateral to transposed r5 and for a short time, in condensing gangli

228 are no examples of A-type elements that have transposed recently to inactivate a gene, this assay is

229 Transposons Tn5096 and Tn5099 transposed relatively randomly in Sf, and many of the in

230 y from the initial transgene array, but once transposed, RescueMu is suitable for high throughput gen

231 hairpin formation on target DNA adjacent to transposed RSS ends in a manner consistent with a model

232 The RAG proteins are also capable of transposing RSS-ended fragments into new DNA sites.

233 The X-transposed sequences exhibit 99% identity to the X chrom

234 e elements such as Himar1 have been shown to transpose significantly more frequently when free of exo

235 The transposing species is a fragment of DNA containing a Di

236 TAHRE, which maintain Drosophila telomeres, transpose specifically onto chromosome ends to form long

237 In this study, "transposed stimuli" were used to dissociate temporal fro

238 ilable at http://chibba.pgml.uga.edu/mcscan2/transposed/ SUPPLEMENTARY INFORMATION: Supplementary dat

239 ects on decomposition measured by DSC and by transposed temperature drop calorimetry, and both these

240 somes are stable to competitor DNA, actively transpose the non-Mu DNA, and produce transposition prod

241 ergo a singlet-state photoisomerization that transposes the methylene carbon.

242 Our approach transposes the oscillator and frequency reference of a c

243 position, we developed a "SEM switch", which transposes the SEM-protecting group from one nitrogen to

244 By transposing the basic mechanistic principle of the nucle

245 eletion of the cytoplasmic domain as well as transposing the palmitoylated Cys to positions further a

246 Transposing the RTS1 element to the distal side of mat1

247 To transpose these interactions from undisturbed dental pla

248 transposons are mobile genetic elements that transpose through reverse transcription of an RNA interm

249 n (Ac/Ds) elements are able to replicate and transpose throughout the maize genome.

250 20 soybean chromosomes, indicating that Tnt1 transposed throughout the soybean genome.

251 ot analysis revealed that the copy number of transposed Tnt1 elements ranged from four to 19 insertio

252 -specific transposition machinery, generally transpose to a naturally evolved, neutral attTn7 site th

253 llelic sites, but how they are stimulated to transpose to ectopic locations on an evolutionary timesc

254 tions onto the ends of chromosomes and never transpose to internal regions of chromosomes.

255 While other non-LTR retrotransposons transpose to many chromosomal sites, HeT-A and TART tran

256 Activator (Ac) and Dissociation (Ds) tend to transpose to sites close to their original position and

257 c-Jun/c-Fos- and UV-induced activation when transposed to a heterologous promoter.

258 ast strains in which the centromere had been transposed to a new location, it was demonstrated that t

259 ry cheap, highly sensitive, and very readily transposed to a point of care.

260 lmitate was abolished if the Cys residue was transposed to a position that was 30 amino acids away fr

261 in a third mutant the co-segregating Ac had transposed to a site which was not tightly linked to the

262 gins while the remaining glandular tissue is transposed to achieve the best possible cosmetic outcome

263 ain of the mt- locus, and has duplicated and transposed to an autosome in a laboratory strain.

264 This effect can be transposed to another transcription unit, demonstrating

265 We show that Ds transposed to both linked and unlinked sites and display

266 In two of the tagged mutants Ac had transposed to closely linked sites, while in a third mut

267 Transposed to humans, our results may suggest that the p

268 The model was then transposed to long-term continuous flow simulations usin

269 d that newly duplicated genes that have been transposed to new chromosomal locations are significantl

270 t, where a peripheral microtubule doublet is transposed to the center of the ciliary axoneme to repla

271 nonical C-terminal domain seems to have been transposed to the N terminus.

272 The other hemi-spleen is transposed to the s.c. position, thereby permitting subs

273 mic and molecular analyses show that JYAlpha transposed to the third chromosome during the evolutiona

274 at RBMY represents an ancestral hnRNPG gene, transposed to the Y chromosome and then amplified.

275 ments can arise at the Ac donor site when Ac transposes to another site in the genome.

276 esses two glmS genes on chromosome 1 and Tn7 transposes to both sites, although transposition to attT

277 Phage Mu DNA transposes to duplex target DNA sites with limited seque

278 ic element of Saccharomyces cerevisiae, Ty1, transposes to new genomic locations via the element-enco

279 end of the chromosome until another element transposes to occupy the terminal position.

280 egments (residues 115-136 and 282-288), when transposed together, converted mouse sensitivities to th

281 ning segments of DNA that were duplicatively transposed towards pericentromeric regions at a rate of

282 Methylation of the non-transposed transgene and its promoter, as well as a high

283 ons showed Mendelian segregation and did not transpose under normal growth conditions.

284 ropose that MITEs are genomic parasites that transpose via a DNA intermediate, which forms by a foldi

285 nd SINEs are retrotransposons; that is, they transpose via an RNA intermediate.

286 A central fragment from the transposing virus D108 allowed efficient Mu replication

287 s present in the D. melanogaster genome have transposed well after this species diverged from its clo

288 9 with tri- and tetra-(ethyleneoxy) linkages transposed were synthesized regiospecifically in high yi

289 same site in O2 as the rbg of o2m(r) and can transpose when Bg is present.

290 etrotransposition selectable marker can only transpose when Tnt1 proteins are co-expressed from a sep

291 sequence evolution in duplicated genes that transposed when compared to the parental copy at the ori

292 Because Ac-Ds has been shown to transpose widely in the plant kingdom, the activation ve

293 t, other Drosophila non-LTR retrotransposons transpose widely through gene-rich regions, but not to e

294 These "frameshift transplant" mutants transpose with only a modest decrease in efficiency, sug

295 All five versions of Tf1 transposed with frequencies that were significantly lowe

296 When r5 is transposed with r4 by rostrocaudal rotation of the rhomo

297 me family as the CRM elements, also recently transposed with the oldest element having transposed app

298 can occur, and lectin repeats replicate and transpose within the gene.

299 l CRM elements indicated that these elements transposed within the last 1.22 million years.

300 nd three classes of euchromatic sequences: X-transposed, X-degenerate and ampliconic.