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1 ning basic amino acid residues (for example, tryptic peptides).
2 using LC-MS/MS for detection of a selective tryptic peptide.
3 +0) to six amino acid residues (+6) for each tryptic peptide.
4 observed for arginine- and lysine-terminated tryptic peptides.
5 rified protein, and LC-MS/MS analysis of CRP tryptic peptides.
6 ne product by mass spectrometric analysis of tryptic peptides.
7 uorophore based on mass spectral analysis of tryptic peptides.
8 ibed for a collection of approximately 40000 tryptic peptides.
9 reaction with C-terminal digestion to modify tryptic peptides.
10 ntified in acidic fractions from analysis of tryptic peptides.
11 -spectrometric analysis of their constituent tryptic peptides.
12 terns for singly charged Arg- and Lys-ending tryptic peptides.
13 724-739) were identified as isoform-specific tryptic peptides.
14 n the intense y series peaks associated with tryptic peptides.
15 the ion current ratio determined for the two tryptic peptides.
16 f-flight mass spectrometry (MALDI-TOF MS) of tryptic peptides.
17 bearing characteristics very different from tryptic peptides.
18 identified as Pg by mass spectrometry of its tryptic peptides.
19 cluded an estimated approximately 98% of all tryptic peptides.
20 cid sequences that exactly match iPLA(2)beta tryptic peptides.
21 s(354) by HPLC and mass spectral analysis of tryptic peptides.
22 e-modified cysteines by mass spectrometry of tryptic peptides.
23 s to compare yields of numerous varieties of tryptic peptides.
24 tation and by mass spectroscopic analysis of tryptic peptides.
25 block both N-termini and lysine residues of tryptic peptides.
26 and more sequence information for the large tryptic peptides.
27 to enhance MALDI tandem mass spectrometry of tryptic peptides.
28 LIC models developed for complex mixtures of tryptic peptides.
29 -activated dissociation (CAD) spectra of the tryptic peptides.
31 wing the formation of the bis-phosphorylated tryptic peptide, 173-HTDDEMT*GY*VATR-186, using [gamma-3
33 etylated amino groups and introduce into the tryptic peptide a biotin affinity handle, a visible moie
34 has been demonstrated with a triply charged tryptic peptide, a triply charged tryptic phosphopeptide
35 s been demonstrated with a doubly protonated tryptic peptide, a triply protonated phosphopeptide, and
37 oaches using selected reaction monitoring of tryptic peptides (also known as bottom up) have become c
38 d substrate ssDNA bind to the same three A3G tryptic peptides (amino acids 181-194, 314-320, and 345-
41 hout enrichment of glycopeptides from global tryptic peptides and at a false discovery rate of 1%, 10
42 as obtained using PACE-MSI for both digested tryptic peptides and endogenous neuropeptides from compl
45 tion, MALDI-ToF mass fingerprint analysis of tryptic peptides and MALDI-ToF reflectron in-source deca
47 abundance by counting the number of detected tryptic peptides and their corresponding MS spectra.
48 sing mass spectra of the cysteine-containing tryptic peptides and used to follow the unfolding of eac
49 cal lengths (e.g. shorter/longer than common tryptic peptides) and lack of tryptic residues to facili
50 )(1%)) of 20.2 and 20.5, common sequences of tryptic peptides, and cross-reactivity with FAP antibody
51 atographic fractionation of the ICAT-labeled tryptic peptides, and protein identification and quantif
52 sotopic tags to both the N- and C-termini of tryptic peptides, and second, a search engine (based on
53 nal activation of modified lysine-terminated tryptic peptide anions is consistent with a covalent mod
54 in 50 min from approximately 4000 identified tryptic peptides; approximately 550 proteins in 20 min f
55 The effective peak capacities in analyses of tryptic peptides are approximately 500 for FAIMS/IMS sep
56 d y-ion series, and LC retention time of the tryptic peptides are essential pieces of information for
58 r and, because cysteine residues on separate tryptic peptides are measured separately, is not complic
59 metry (ESI-tandem MS), a total of 6112 fully tryptic peptides are sequenced at a 1% false discovery r
61 g synthetic heavy isotope-labeled C-terminal tryptic peptides as spiked standards with a triple quadr
62 ed multiple reaction monitoring quantitative tryptic peptide assays were developed for each phosphory
63 s generated containing 8400 MS/MS spectra of tryptic peptides assigned with high probability to an am
65 tein and the few hydrophobic and hydrophilic tryptic peptides available in the digest is demonstrated
66 s in the mass spectra of this doubly charged tryptic peptide, based solely on its amino acid sequence
69 2SC formation were determined by analysis of tryptic peptides by high-performance liquid chromatograp
71 sp. NRC-1 and identified the sequence of 23 tryptic peptides by nano-liquid chromatography electrosp
72 ry was performed on several of the resulting tryptic peptides by using collision quadrupole time of f
73 that the MALDI MS/MS analysis of sulfonated tryptic peptides can provide a highly effective method f
75 man degradation and liquid chromatography of tryptic peptides combined with tandem mass spectrometry
76 10-fold increase in the number of identified tryptic peptides compared to that obtained using a fixed
77 ed the mass distributions of all theoretical tryptic peptides composed of 20 natural amino acids and
78 ein concentration was shown to be unequal to tryptic peptide concentrations for most peptides, includ
79 crophages is phosphorylated on only a single tryptic peptide containing 14 potential phosphoacceptors
80 ptides, MALDI MS/MS analysis of a sulfonated tryptic peptide containing a diglycine branch generates
82 ometry (LC-MS) with tandem MS (MS/MS) of the tryptic peptide containing the intramolecular disulfide
84 his antibody only five were utilized, as the tryptic peptide derived from monoclonal IgM 12A1 contain
86 the analysis of coeluting model peptides and tryptic peptides derived from human plasma proteins, all
87 no acid pools in barley leaves and then into tryptic peptides derived from newly synthesized proteins
88 ptimize quantitation of different amounts of tryptic peptides derived from PE using light (H4, 4 hydr
89 upported by a mass loss of 2 Da observed for tryptic peptides derived from species that accumulate du
90 ometry to compare the relative abundances of tryptic peptides derived from suitable pairs of purified
92 LDI-TOF mass spectrometric fingerprinting of tryptic peptides derived from the purified NEC3 confirme
94 pproach simplified the detection of glycated tryptic peptide elution in the LC/MS analysis by giving
95 CID as the unmodified cations for the small tryptic peptides examined here and more sequence informa
96 ities that are used to predict the number of tryptic peptides expected to be detected for one molecul
97 to analysis by MALDI-TOF mass spectrometry, tryptic peptide fingerprinting, molecular characterizati
98 ography tandem mass spectrometry analysis of tryptic peptides, followed by searching an appropriate s
101 ne strong cation exchange chromatography for tryptic peptide fractionation and combining it with the
104 intact proteins and/or an LC-MS analysis of tryptic peptide fragments generated after the oxidation
105 ectrometry/mass spectrometry analysis on the tryptic peptide fragments indicates that the 3-fluorosia
107 proteins are generally characterized through tryptic peptide fragments, this paper reports a method f
108 onfirmed using the y14 ion and b8 ion of the tryptic peptide from bovine Hb alpha chain residues 69-9
109 nfolded and deamidated ribonuclease A, and a tryptic peptide from calmodulin deamidated in its native
110 dues 69-90, and HML was quantified using the tryptic peptide from human Hb alpha chain residues 63-91
112 eamidated tryptic peptide of cytochrome c, a tryptic peptide from unfolded and deamidated ribonucleas
113 fidence identifications of >12 000 different tryptic peptides from >2000 distinct Shewanella oneidens
114 ent sequencing approach, a collection of 266 tryptic peptides from 23 model proteins were analyzed an
118 btained by partial sequencing of distinctive tryptic peptides from Bacillus spores via post-source de
120 esulting peptide anions, as demonstrated for tryptic peptides from bovine serum albumin and Halobacte
121 y, was evaluated using a mixture composed of tryptic peptides from caseins, bovine serum albumin, and
122 ed deamidation half-life for three different tryptic peptides from collagen (I) ranged from 2000 to 6
123 proteomics analyses to confidently identify tryptic peptides from complex mixtures of proteins, as w
125 s of samples of complex mixtures composed of tryptic peptides from human and mouse blood proteins usi
126 even (15)N-labeled QconCATs that cover seven tryptic peptides from human clusterin with a length of n
128 samples containing approximately 100 mug of tryptic peptides from mouse cerebrocortical brain tissue
129 oteins isolated from the mutants showed that tryptic peptides from phycocyanin that included Asn72 we
130 on initiation factor that binds Met-tRNA(i), tryptic peptides from rabbit reticulocyte eIF2A were ana
131 gradation and mass spectrometric analyses of tryptic peptides from rat DSP-PG, along with substitutio
135 By calculating the masses of all potential tryptic peptides from the human proteome, we show that r
136 five pH bumps were applied to elute E. coli tryptic peptides from the monolith, followed by analysis
138 derivatives and the production of different tryptic peptides from the unmodified and modified versio
144 from 27 different peptides (22 of which are tryptic peptides) has been studied in a 3D quadrupole io
146 This approach involves (18)O labeling of tryptic peptides, high-efficiency enrichment of cysteine
147 introduce the notion of truncatability of a tryptic peptide, i.e. the probability of the peptide to
149 E to the mobile phase of nLC/MS experiments, tryptic peptide identifications increased from 93 to 111
150 eries of epitope sequences concatenated with tryptic peptides in a single artificial protein to creat
151 sured both the quantity and kinetics of SP-B tryptic peptides in tracheal aspirate samples of symptom
153 g in mass from 400 to 3000 m/z) of model and tryptic peptides, including serine, threonine, and tyros
155 Even so, mass spectrometric analysis of tryptic peptides indicated that the HMM CYP3A was in mol
157 ated that serine phosphorylation of a single tryptic peptide inhibits its transport activity without
158 157 nm photodissociation of a singly charged tryptic peptide ion (NWDAGFGR) showed that prompt photof
159 tructural changes that would be expected for tryptic peptide ions and are consistent with the experim
160 ss spectrometry (IMS-MS) study revealed that tryptic peptide ions containing a proline residue at the
161 ser desorption/ionization (AP-MALDI)-derived tryptic peptide ions have been subjected to ion/ion reac
162 roteomic analysis, yet the singly protonated tryptic peptide ions produced by MALDI are significantly
163 viously been shown that photodissociation of tryptic peptide ions with 157 nm light in a matrix-assis
165 y antipeptide antibodies, wherein a specific tryptic peptide is selected as a stoichiometric represen
167 d amount(s) of standard peptides (PE-derived tryptic peptides) is necessary for high-quality linear q
169 to conventional tandem MS spectra of native tryptic peptides, MALDI MS/MS analysis of a sulfonated t
176 romatography, were fully characterized using tryptic peptide mapping and tandem mass spectrometry.
177 n was modified minimally with methylglyoxal, tryptic peptide mapping indicated a hotspot of modificat
180 rom cation-exchange chromatography (CEX) and tryptic peptide maps generated with the new digestion me
183 LN-KO and wild-type hearts were subjected to tryptic peptide mass fingerprinting for identification b
186 esponded to peptides that were identified by tryptic peptide mass spectrometry fingerprint analysis o
188 eptide analytes from both simple and complex tryptic peptide matrices using selected reaction monitor
191 ence in peptide assignments was achieved for tryptic peptides, measured by changes in DeltaCN and RSP
192 roscopy, separated protein fluorescence, and tryptic peptide modification in liquid chromatography-ta
195 substance P peptide, as well as a mixture of tryptic peptides obtained by enzymatic digestion of cyto
197 tion in peptides from proteins; a deamidated tryptic peptide of cytochrome c, a tryptic peptide from
200 defined by the presence of the COOH-terminal tryptic peptide of the CgA precursor, corresponding to r
201 ometer and applied for the separation of the tryptic peptides of a six-protein mixture and for the pr
202 formance liquid chromatographic radiolabeled tryptic peptides of alkylated bC2GnT-M on C18 column.
205 the tested BGEs, the best resolution of the tryptic peptides of extracted proteins of the above thre
207 untargeted "adductomics" method detected 50 tryptic peptides of HSA, containing Cys34 and prominent
208 ay ionization time-of-flight analysis of the tryptic peptides of mononitrated lysozyme identified the
209 ds of known amounts of heavy isotope-labeled tryptic peptides of PE provided linear calibration plots
211 rmance liquid chromatographic profile of the tryptic peptides of reduced-alkylated (35)S-labeled C2Gn
213 M receptor as shown by MALDI-TOF analysis of tryptic peptides of TbetaR-V purified from bovine liver.
215 romatography-tandem mass spectrometry of the tryptic peptides of the extracted/digested HU protein.
216 MS method for the direct detection of unique tryptic peptides of the KPC protein in clinical bacteria
218 ass of 2601.2 Da that was not present in the tryptic peptides of Tm*146 or TnI was identified using H
219 ion concatamer (QconCAT) carrying prototypic tryptic peptides of UCH-L1 was used as an internal stand
221 lyze an interference model system comprising tryptic peptides of yeast that we contaminated with huma
223 times the peptides were observed relative to tryptic peptides or those guanidinated with the conventi
225 exposure has been monitored by the ratio of tryptic peptide peaks that correspond to unmodified (uni
227 oteome level by examining the quality of the tryptic peptides prepared by on-surface nanodiamond dige
228 Amino acid analysis and Edman degradation of tryptic peptides proved that the core protein for DMP1-P
229 suitable for dissociating singly protonated tryptic peptides, providing greater sequence coverage th
230 he LC/MS/MS analysis of the affinity-labeled tryptic peptides purified from HPLC, identified two majo
231 artificial gene encoding a concatenation of tryptic peptides (QCAT protein) from several chick (Gall
232 spectrometry analysis of >330,000 synthetic tryptic peptides representing essentially all canonical
234 ging from 2.4- to 12.3-fold for the detected tryptic peptides resulted; the varying response was attr
237 of 1465 ion trap spectra from doubly charged tryptic peptides reveals several trends important to und
239 roteins were then characterized by SDS-PAGE, tryptic peptide sequence analysis, and Western blot anal
241 nd liquid chromatography (LC)-MS analysis of tryptic peptides showed that 54 peptides distributed thr
242 yptic digests were analyzed by LC-MS/MS, and tryptic peptides specific for bovine and human Hbs were
243 Hb, and equine Hb were compared, and unique tryptic peptides specific for bovine Hb, human Hb, and e
244 single artificial protein to create internal tryptic peptide standards for MS as well as an intact pr
245 by mass spectrometric analysis of protonated tryptic peptides subjected to collisional activation.
246 nd MeArg were not found together on the same tryptic peptide, suggesting reciprocal regulation of the
247 was helpful to elucidating sequences of the tryptic peptides thanks to the fragment peptide ions pro
248 itration site was determined by sequencing a tryptic peptide that included Tyr23 and Tyr20, but possi
249 ad a retention time identical to that of the tryptic peptide that includes phycocyanobilin-bound, cys
251 all isoforms of APP concatenated with those tryptic peptides that are unique for specific APP isofor
253 ause, in contrast to the more widely studied tryptic peptides, the amino acids H, K, and R were posit
254 lision Induced Dissociation (CID) spectra of tryptic peptides], their performance often deteriorates
256 ion and tandem mass spectrometry analysis of tryptic peptides to identify the PAL-E antigen as a secr
257 e, and laser desorption mass spectrometry of tryptic peptides, to define a series of epidermal protei
258 s studied by analyzing the separation of the tryptic peptides under different average column pressure
259 es were driven by the spatial orientation of tryptic peptides upon interaction with the negatively ch
260 igestion, online enrichment of IL-21 derived tryptic peptides using antipeptide antibodies, and quant
261 eptides in addition to a complex mixtures of tryptic peptides using LC-MS/MS, showing not only that A
262 digestion and quantitation of a NGF-derived tryptic peptide via high-flow peptide immunoaffinity enr
266 A large-scale analysis of 755 doubly charged tryptic peptides was conducted to compare the method (ET
267 nd experimental m/z values for serum albumin tryptic peptides was found to be 8 ppm using the double
272 s spectrometry and de novo sequencing of CPO tryptic peptides, we determined that three of the seven
273 nown histone H3/H4 acetylated and methylated tryptic peptides, we identified novel H3 K18 methylation
274 plying this method to identification of semi-tryptic peptides, we show that a significant number of s
275 ated measurements for each of the endogenous tryptic peptides were 17.0, 25.4, 24.2, and 14.0% for co
276 sone mesylate and the dexamethasone-modified tryptic peptides were analyzed by mass spectrometry, and
278 motifs in interacting proteins, their unique tryptic peptides were analyzed by the motif scan softwar
281 The amino acid sequences of these unique tryptic peptides were confirmed by their characteristic
282 only 3 x 108 cells, at least four different tryptic peptides were detected for each of 404 proteins
283 l peptide separations, a total of 6866 fully tryptic peptides were detected, leading to the identific
284 by one-dimensional gel electrophoresis, and tryptic peptides were extracted from gel slices and anal
286 protein was purified to homogeneity, and its tryptic peptides were identified as gene At1g73080, whic
287 excised, and Ala-/Gly-rich, allele-specific tryptic peptides were identified by liquid chromatograph
288 ristics of these standards and collection of tryptic peptides were mapped into hydrophobicity index (
291 were digested, and evolutionarily conserved tryptic peptides were quantified using isotope-dilution
292 purified and digested with trypsin, and the tryptic peptides were separated by high pressure liquid
293 lated by denaturing gel electrophoresis, and tryptic peptides were then subjected to affinity purific
294 e determined based upon the concentration of tryptic peptides, which in turn had been quantified base
295 age intensities of spiked synthetic catalase tryptic peptides, which we used as an internal standard,
297 reliably detected based on identification of tryptic peptides with masses of 1148.59 Da, 1162.60 Da,
299 ction; (iii) enrichment of the biotin-tagged tryptic peptides with streptavidin; (iv) liquid chromato
300 After filtering, only a limited number of tryptic peptides with the highest truncatability are ret
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