ライフサイエンスコーパス: typed

1 e B, 4.1% genotype E, and 21.4% unable to be typed).

2 umors derived from SK-Hep1 cell (mesenchymal-typed).

3 from throat swabs were obtained and were emm typed.

4 cision overall, with >80% of calls correctly typed.

5 (43%) of 14 patients with multiple specimens typed.

6 mber in a family given all individuals being typed.

7 s, and a proportion of detected strains were typed.

8 gene or region, irrespective of the markers typed.

9 udies of this trait, irrespective of the SNP typed.

10 Available isolates were emm typed.

11 tted for analysis, and 156 were successfully typed.

12 somal cassette mec (SCCmec) element was also typed.

13 ALOX5 repeat polymorphism were successfully typed.

14 oth clinical and environmental sources, were typed.

15 ree patients with NPBC were enrolled and HLA typed.

16 All isolates were successfully dru typed.

17 d predominantly in Bangkok were HLA-A and -B typed.

18 novirus-positive cases, among which 64% were typed.

19 iruses and eight parechoviruses could not be typed.

20 une response and immune modifier genes, were typed.

21 tigate species and serovar distributions, we typed 1,061 clinical isolates of human ureaplasmas from

22 We PHAT typed 1,132 E. coli isolates, representing at least 62 M

23 In this study we typed 100 unrelated Uyghur males living in southern Xinj

24 pulation-genetics evidence for selection, we typed 101 single-nucleotide polymorphisms covering 3.2 M

25 We typed 12 single-nucleotide polymorphisms (SNPs) that cov

26 We typed 13 single-nucleotide polymorphisms, located mainly

27 We typed 14 sequence variants that had minor allele frequen

28 We typed 16 polymorphic markers encompassing the region of

29 We then typed 162 single-nucleotide polymorphism markers across

30 We typed 165 Candida albicans isolates from 44 different so

31 We typed 22 variants in the F11R/USF1 region (1 per 3 kb),

32 We typed 289 SNPs in the critical interval of 8 million bas

33 We typed 350 isolates of toxigenic C. difficile from 2008 t

34 The Mammalian Genotyping Service typed 391 microsatellite markers, spaced roughly 9 cM.

35 In a staged approach, we first typed 4,608 SNPs in case-control populations from four U

36 To further localize the genetic effects, we typed 59 microsatellites in the two best regions, as def

37 To map the modifier loci, we typed 811 short-tandem repeat markers ( approximately 5

38 Of the 157 specimens typed, 97 were P1 type 1 and 60 were P1 type 2.

39 We typed a molecular marker (contig325) linked to met and f

40 We typed a set of 106 ancestry informative markers in 440 L

41 als from the United Arab Emirates (UAE) were typed across 15 autosomal short tandem repeat (STR) loci

42 hat a single panel of approximately 100 SNPs typed across the region is sufficient for predicting bot

43 ies may occur in part through effects on sex-typed activity interests.

44 ability in females directly and through male-typed activity interests.

45 Based on this association, we typed additional markers and screened for sequence varia

46 additional families for the same markers and typed additional markers for all families and obtained a

47 with cluster 17, a multicenter collaboration typed additional subjects for a single marker (M6S161) f

48 We successfully typed all five red blood cell variants for 1543 of these

49 There were 20 human leukocyte antigen-typed allolimbal transplants from cadaveric donors.

50 Typhi was identified, whole-genome sequence typed, among other analyses, and compared to other avail

51 For validation, we typed an additional 761 Swedish individuals.

52 e imputed and, after quality exclusions, 501 typed and 1232 imputed SNPs were included in logistic re

53 validated using 157 sequences (86 previously typed and 71 clinical samples) and correctly identified

54 d States between 1974 and 2004 were sequence typed and analyzed for the presence of various genes, in

55 Clostridium difficile isolates were typed and compared with isolates from patients with CDI.

56 tified on the basis of DNA homology and were typed and fingerprinted by repetitive element sequence-b

57 the parainfluenza virus to be identified and typed and for it to be distinguished from the influenza

58 Tumors were typed and graded according to the World Health Organizat

59 st commonly gliomas, are histopathologically typed and graded as World Health Organization (WHO) grad

60 te genes or throughout the entire genome are typed and height data from childhood to adulthood are co

61 compared between men and women for directly-typed and imputed variants within each study.

62 he MHC region and for classical HLA alleles (typed and imputed).

63 patients and donors were high-resolution HLA-typed and matched for 10/10 (n = 1379), 9/10 (n = 636),

64 vasive infection isolated in France were CPS typed and the presence of the CC17-specific surface prot

65 Clostridial isolates were typed and toxin genes detected.

66 All available isolates (n = 275) were spa typed and underwent whole-genome sequencing to investiga

67 inkage disequilibrium (LD) information among typed and untyped variants available from an external re

68 y-nine (76%) of 38 non-HCT patients were HLA typed, and matched donors were found for 13 of these 29

69 All patients were HLA-DRB1 typed, and tested for anti-cyclic citrullinated peptide

70 All strains were spa typed, and the presence or absence of, scn, chp, phi3 in

71 Eighty-four isolates typed as 027, NAP1, and BI, and 83 of these were identif

72 For instance, five isolates were typed as 6A with the Neufeld test but as nontypeable by

73 Replication-defective mutants were typed as class I (blocked at integration) or class II (a

74 Defective viruses were typed as class I mutants (specifically blocked at integr

75 d 2,853 (72%) of all outbreaks, of which 94% typed as either GII.4 New Orleans or GII.4 Sydney.

76 Viruses from five (45%) of 11 children were typed as enterovirus D68.

77 A total of 435 outbreaks (11%) were typed as genogroup I (GI) and 3,525 (89%) as GII norovir

78 ro cultures were established, parasites were typed as L. braziliensis, and the presence of LRV1 was d

79 All 50 isolates were typed as M. abscessus subspecies abscessus and were clon

80 These are now typed as reaction-like commands in ASCII text files that

81 ity and long RNA electropherotypes, and were typed as rotavirus serotype G2 with monoclonal antibodie

82 In addition, the strains were typed as rotavirus VP7 genotype G3 and VP4 genotype P[8]

83 ere untypeable by the Pneumotest method were typed as serogroups 6 and 31 by the slide agglutination

84 ifferences were recently noted among strains typed as serotype 20.

85 ubtypes among pneumococcal isolates that are typed as serotype 6A by the quellung reaction.

86 times background over a region of size 10 kb typed at density 1 marker per 2.5 kb and almost 100% pow

87 of haplotype pairs (diplotypes) for 20 SNPs typed at equal 50-kb intervals in a 950-kb candidate reg

88 n 1874 donor-recipient pairs retrospectively typed at high resolution for HLA-A, -B, -C, -DRB1, -DQ,

89 aucasian families and 38 Asian families were typed at high resolution for the DRB1, DQA1, and DQB1 lo

90 ge data sets (e.g., thousands of individuals typed at hundreds of thousands of markers).

91 actices, performed a GAS carriage study, emm-typed available GAS isolates, and conducted a case-contr

92 lls obtained intermittently from healthy HLA-typed blood donors between 1999 and 2012, we were able t

93 With planning, access to HLA typed blood is achievable as many blood transfusion cent

94 Of 13 typed Borrelia strains, 11 were B. afzelii, 1 was B. gar

95 ure most of the diversity in TGFB1 were also typed but none showed association with variation in lung

96 Of 187 patient isolates (78.6%) typed by both spoligotyping and analysis of VNTRs, 147 w

97 One hundred N. meningitidis samples were typed by comparing MALDI-TOF MS fingerprints of the stan

98 s, only a subset of all genomic variants are typed by current, high-throughput, SNP-genotyping platfo

99 The false-positive E. faecalis strains were typed by Diversilab Rep-PCR (bioMerieux, Marcy l'Etoile,

100 rted MRSA outbreaks that had been previously typed by DL, each consisting of six isolates (where five

101 Retrospectively, 179 pairs were HLA typed by HR.

102 row, fat pad, and solid organ tissue samples typed by liquid chromatography tandem mass spectrometry

103 bmitted between Aug 1, and Oct 31, 2014, and typed by molecular sequencing.

104 80.4%) isolates with discrepant results were typed by mPCR/RLB as belonging to serotype V.

105 t with 48 isolates from Thailand, which were typed by multilocus sequence typing (MLST), and 44 isola

106 rains, including 322 NTHI strains, have been typed by multilocus sequence typing and found to have 35

107 A and vacuolating cytotoxin gene (vacA) were typed by PCR and the cagA EPIYA typing was confirmed by

108 All C. difficile strains were typed by PCR-ribotyping.

109 by DL and one was an unrelated DL type) were typed by PFGE.

110 Isolates were typed by polymerase chain reaction ribotyping.

111 C. difficile isolates were typed by polymerase chain reaction-ribotyping and analyz

112 enth MSSA isolate and all MRSA isolates were typed by pulsed-field gel electrophoresis (PFGE), screen

113 tal system infections, or endocarditis, were typed by pulsed-field gel electrophoresis (PFGE).

114 Isolates were typed by pulsed-field gel electrophoresis (PFGE).

115 th microdilution, and selected isolates were typed by pulsed-field gel electrophoresis, repetitive se

116 Isolates were typed by pulsed-field gel electrophoresis.

117 nts and HIV-negative patients; isolates were typed by pulsed-field gel electrophoresis.

118 Isolates were typed by repetitive PCR (rep-PCR) (DiversiLab System; DL

119 nterval, SNPs and indels were discovered and typed by resequencing.

120 nationwide between 1997 and 2003 were genome typed by restriction enzyme analysis.

121 Isolates were typed by sequencing.

122 olates collected from 2008 through 2010 were typed by single-nucleotide polymorphism (SNP) analysis,

123 These isolates were typed by SmaI-macrorestricted pulsed-field gel electroph

124 M. tuberculosis strains (n = 56) were typed by spoligotyping with rep-PCR as a high-resolution

125 The IRS1 G972R polymorphism was typed by TaqMan allele discrimination.

126 om study nursing homes that were clonal when typed by the commercial rep-PCR method were frequently n

127 Genetic variants typed by the exome array explained 44%, 53%, and 57% of

128 ing data rates of 2-3% at sites successfully typed by the HapMap project, with an accuracy of at leas

129 molytic colonies resembling pneumococci were typed by the Quellung reaction.

130 98% (81/83 samples) with samples previously typed by the Versant HCV Genotype 2.0 RUO system with ma

131 A second panel of 59 HCC that had been typed by transcriptomics and classified in G1 to G6 subg

132 ins of M. abscessus that had been previously typed by variable-number tandem repeat profiling.

133 , and Sapelovirus; PCR-positive samples were typed by VP1 sequencing.

134 , and Sapelovirus, and positive samples were typed by VP1 sequencing.

135 n-NRT-PCR was found to be less sensitive: it typed C. trachomatis DNA in only 80% of the genital samp

136 proportions of influenza B cases out of all typed cases, with data from 139 countries and regions do

137 Genomic DNA from typed cells lines was obtained and scored for the K-Ras

138 analyzed these SNPs in samples from 143 HLA-typed children who participated in the Diabetes Autoimmu

139 majority of these genotypes in less-densely typed classical inbred strains to provide a complete vie

140 interactions between individual, spectrally typed cones in the central retina of human observers usi

141 Eight Mauritian derived, MHC-typed cynomolgus macaques were immunised with 10(5) TCID

142 ging experimental data based on semantically typed data hypercubes (SDCubes) that combine hierarchica

143 We applied this methodology to two densely typed data sets: 500 Ashkenazi Jewish (AJ) individuals a

144 elets, which is only possible if a large HLA-typed donor pool is available.

145 ver, in reality, many family members are not typed due to practical reasons.

146 eutralizing activity against RABV and pseudo-typed EBOV.

147 tract inferred restriction from HLA class II-typed epitope responses.

148 PATS typed every O157 isolate tested and directly targeted po

149 ping system, referred to as XbaI-based PATS, typed every O157 isolate tested in a reproducible, rapid

150 rnica multinuclear polyhedrosis virus pseudo-typed FIV efficiently and showed excellent hepatocyte tr

151 ss II major histocompatibility complex (MHC)-typed FLS were used as APCs for murine class II MHC-rest

152 t psoriasis; 620 of these families were also typed for 34 microsatellite markers spanning the PSORS1

153 r the visit when HIV was first detected were typed for 37 HPV genotypes or subtypes.

154 ed by the North American RA Consortium, were typed for 379 microsatellite markers.

155 he location of jal, the 374-member panel was typed for a set of four single-nucleotide markers locate

156 AA populations with FSGS, HIVAN and H-ESKD (typed for a subset of 46 SNPs), for a total of 2496 case

157 After chimeras were typed for allogeneic BMC engraftment on day 28, animals

158 Sinai Medical Center repository, previously typed for anti-Saccharomyces cerevisiae antibody, anti-I

159 pulations and four genomic regions (248 SNPs typed for approximately 2000 individuals).

160 nked immunosorbent assay (ELISA) and further typed for colonization factor antigens by dot blot assay

161 3 unlinked autosomal microsatellite loci are typed for forensic use.

162 Patient-donor pairs were fully typed for HLA-A, -B, -C, -DRB1, -DQB1, -DQA1, -DPB1, and

163 Donors and recipients were high resolution typed for HLA-A, -B, -C, -DRB1, and -DQB1.

164 ed and ninety-six recipient/donor pairs were typed for HLA-DRB1 at high resolution.

165 ccurring infectious P-MLVs, 12 of which were typed for pathogenic potential.

166 Individuals from these same crosses were typed for single-nucleotide polymorphisms distributed th

167 nting genetically isolated populations, were typed for SNPs and other polymorphisms identified from B

168 nts with tuberculosis from South Africa were typed for their HLA class I alleles by direct sequencing

169 ples from Madagascar, porB was amplified and typed from 60 of 126 samples from ligase chain reaction

170 Twelve single-colony isolates were typed from samples producing ambiguous initial results.

171 817 controls, using imputation to recover un-typed genotypes.

172 All members of a panel of 137 previously typed HAdV field isolates and positive clinical specimen

173 of T lymphocytes harvested from seven HLA-DR-typed healthy donors, we derived CD4(+) T cell lines spe

174 The creation of a bank of HLA-typed hES cells, from which a best match could be select

175 , and we analysed relations with molecularly typed HLA-A, B, and C alleles by survival techniques.

176 We therefore typed HLA-DRB1 and DQB1 in 340 UK, 139 Dutch and 163 Jap

177 We measured biological markers and typed human leukocyte antigen genes DR and DQ.

178 ronic periodontitis and a total of 164 screw-typed implants with peri-implantitis were included.

179 h chronic periodontitis comprising 164 screw-typed implants with peri-implantitis were included.

180 ng a total of 102 microsatellite DNA markers typed in 11-day-old larvae from three families.

181 The map represents 218 markers typed in 185 RH clones.

182 HLA class I and II genes were molecularly typed in 194 Caucasian individuals with viral persistenc

183 ccounted for only 51.3% of 316 MSSA isolates typed in 2001 and 2002 and only 43.4% of 237 MSSA isolat

184 accounted for 80.0% of the 75 MRSA isolates typed in 2001 and 2002, while USA100, USA800, and USA300

185 and 2002 and only 43.4% of 237 MSSA isolates typed in 2003 and 2004.

186 300 accounted for 78.4% of 134 MRSA isolates typed in 2003 and 2004.

187 single nucleotide polymorphisms (SNPs) were typed in 479 type 2 diabetic patients from Boston, inclu

188 fficiently tagged these haplotypes were then typed in 580 infants with severe RSV bronchiolitis and i

189 RVs were successfully detected and typed in 99% of the samples that were RV positive in mul

190 Of 291 SNPs successfully typed in a 7.5-Mb interval, the strongest association co

191 ust the discovery data where the SNP was not typed in a replication sample in PGC-BD.

192 This SNP was typed in European cohorts of rapid progressors and was f

193 applied to biallelic or multiallelic markers typed in haploid, diploid or multiploid organisms, and a

194 ociated single-nucleotide polymorphisms were typed in individual DNA samples, as well as in twins/sib

195 ve allele scores, the peak associations were typed in individual samples, revealing an association be

196 yping of rs3093077 failed, and rs1800947 was typed in only 1 study.

197 Pacific island of Kosrae to the same markers typed in the 270 samples from the International HapMap P

198 ty-eight SNPs approximately 10 cM apart were typed in the F2 progeny and analyzed.

199 Single nucleotide polymorphisms originally typed in the previous Amish association study were extra

200 A panel of copy number variations typed in the same populations shows patterns of diversit

201 From a separate survey of additional SNPs typed in the same samples, we evaluated imputation accur

202 our Roma populations were compared to those typed in the South Indian emigrants from Malaysia and gr

203 the test and the control, with all isolates typed in the test using MLVA and in the control using PC

204 genome-wide single-nucleotide polymorphisms typed in three population groups to assess the consequen

205 These six markers were typed in two populations of CAD-positive and -negative s

206 We also typed inbred strains and wild mouse species for an endog

207 ains causing congenital infections were also typed indirectly based on detection of antibodies to str

208 quencing of 2230 Icelanders into 81 656 chip-typed individuals and 112 630 relatives of genotyped ind

209 In each case, we typed individuals for eight X-linked microsatellite mark

210 these predictions, in a large cohort of HLA-typed individuals, our experiments show that the relativ

211 ocycler (HandyLab Inc., Ann Arbor, MI), that typed influenza A virus, influenza B virus, and respirat

212 usters, broadly distributed among previously typed international strains.

213 r avian mycoplasma strains were successfully typed into eight distinct groups, with each representing

214 ollected during acute respiratory illnesses, typed into group A and B, and sequenced in the attachmen

215 s both in the HapMap as well as in a densely typed island population of 3000 individuals.

216 lded 565 S. epidermidis isolates; 254 of 548 typed isolates (46%) belonged to 1 of 7 clonal types as

217 until December 2013 (epidemic period) 85% of typed isolates were human adenovirus type 8 (HAdV-D8), w

218 backcross panel that segregated for jal, and typed it for 93 PCR-scorable, microsatellite markers tha

219 onizing the way that bacterial organisms are typed, it is necessary to provide backward compatibility

220 The resistance genotypes among the 3,044 typed macrolide-resistant isolates overall were mef(A) (

221 We have systematically typed markers to improve coverage and resolve discrepanc

222 um test analyses, we found that 19 of the 24 typed markers were associated with the disease and the a

223 ta set was complicated by the number of loci typed, missing data, multi-allelic markers and continuou

224 n up but also processed and presented by HLA-typed moDC, monocytes, and PBMCs.

225 HLA-typed moDC, monocytes, or PBMCs were incubated with HLA

226 HLA-typed monocyte-derived dendritic cells (moDCs) were incu

227 ped: N=741), bipolar disorder (STEP-BD, geno-typed: N=1,575), and major depressive disorder (STAR*D,

228 Of the 102 typed NTS isolates, 40% (41) were Salmonella enterica se

229 We compared genome-wide data on 113,240 SNPs typed on 30 trios from the Pacific island of Kosrae to t

230 asets as demonstrated with a 400,000 SNP set typed on a cohort of Parkinson's disease patients and co

231 analysis of rare variants in target samples typed on genotyping arrays.

232 how that these markers can be identified and typed on pre-existing microarray formats.

233 ~22,000 controls from 15 European countries typed on the Immunochip.

234 Herein, we typed over 450,000 CpG sites in whole blood of 573 indiv

235 e compromised when contributing studies have typed partially overlapping sets of markers.

236 s were quantified by cytokine ELISPOT in HLA-typed patients characterized for Abs to IA-2 epitopes.

237 Stored serum samples obtained from 230 HLA-typed patients with JRA (77 with polyarticular-onset dis

238 For HLA-typed patients, mutations compared to the consensus in t

239 c association, using response data in an HLA-typed population.

240 Banking of HLA-typed rAC-VECs establishes a vascular inventory for trea

241 A total of 139 isolates were typed, representing travel to 31 countries.

242 a practical approach for using existing HLA-typed samples to generate an iPSC stem cell bank that ci

243 por types, identified in >45% of women with typed samples, were common to both geographic areas.

244 cates that PYPA laminate crystal possesses p-typed semiconductor characteristics.

245 By studying SIV sequence diversity in 44 MHC-typed SIV-infected pigtail macaques, we defined over 70

246 age disequilibrium (r(2) > 0.8) with another typed SNP.

247 ility hypotheses even if the original set of typed SNPs is incomplete.

248 s of other quantitative traits, whenever the typed SNPs vary among studies, and to assist fine mappin

249 ge disequilibrium and allele frequencies for typed SNPs.

250 same as those of the corresponding tests for typed SNPs.

251 ical to those of spores from a biochemically typed strain.

252 fecal isolates, and for 2 out of 8 sequence-typed strains examined.

253 assigned to usual care typically received a typed, structured discharge summary, prescription for ne

254 datasets of T cell responses in HLA class II-typed subjects by calculating ORs and relative frequenci

255 n 689 (48%), of which isolates from 663 were typed/subtyped: 189 (29%) were A/H1, 210 (32%) were A/H3

256 It implements a Bayesian model using strain-typed surveillance data from both human cases and source

257 types (only 56% of the isolates could be emm typed) that were, with few exceptions, distinct from tho

258 Next, we typed the bacterial species cultured from patient and co

259 We PHAT typed the ECOR collection of strains from a variety of g

260 We typed their whole-blood DNA with the Infinium HumanMethy

261 Sixty five of these isolates were typed to CC398 and a selection of these (n = 38) were fu

262 Potential donors were typed to include information on both HLA-DQA and HLA-DQB

263 ite markers were generated in this study and typed to our 5000-rad horse x hamster whole genome RH pa

264 136 (98.5%) samples tested prospectively and typed two additional isolates.

265 We typed two single nucleotide polymorphisms tagging the ri

266 Thirty-five of 294 (12%) isolates were typed under the O25/ST131 clone.

267 ata for 326 microsatellite markers that were typed uniformly in a large multiethnic population-based

268 sed MIDAS format, assignment of semantically typed universal identifiers, and implementation of a pro

269 on from an external reference panel of fully typed unrelated individuals.

270 MBL2 polymorphisms were typed using a combination of pyrosequencing and TaqMan g

271 The CVL specimens were HPV typed using a MY09/11 L1 consensus primer PCR method fol

272 pediatric cystic fibrosis (CF) patients were typed using a novel variable-number tandem repeat (VNTR)

273 The tissue specimens were HPV typed using an SPF(10) line probe assay HPV detection sy

274 A subset of 625 samples was typed using both PRT-based methods and standard real-tim

275 ) and Project ICARE strain collections, were typed using DL.

276 ynesian archipelagos of Samoa and Tonga were typed using high resolution binary markers and compared

277 ologically using Congo red staining and then typed using immunohistochemistry and mass spectrometry;

278 HPV DNA and antibodies were detected and typed using liquid bead-based multiplex assays.

279 enomes from 5 countries on 4 continents were typed using M. gallisepticum cgMLST.

280 later from the same patient were molecularly typed using multilocus sequence typing (MLST) and multis

281 C. trachomatis samples were typed using multilocus sequence typing.

282 uently noted to be genetically distinct when typed using PFGE.

283 ials comparing fidaxomicin to vancomycin and typed using REA.

284 Polymorphisms were typed using Sequenom matrix-assisted laser desorption/io

285 Then, 42 blinded Aspergillus isolates were typed using the system.

286 ster isolates from Australia and New Zealand typed using this approach, 67 of 127 eastern Australian

287 occus isolates from 15 dogs and 27 cats were typed using URA5 restriction fragment length polymorphis

288 B, sodA and hsp65 gene sequencing and strain typed using variable number tandem repeat.

289 te the total trait variance explained by the typed variants at a single locus in the genome (local SN

290 untyped variants can be well predicted from typed variants, with linkage disequilibrium (LD) informa

291 (with membrane-bound CD4) and an Env-pseudo-typed virus neutralization assay.

292 d for 74.0% and influenza B for 26.0% of all typed viruses.

293 ed donor registries contributed 22.3 million typed volunteer donors and 645,646 cord blood products b

294 tissue bank from 150 selected homozygous HLA-typed volunteers could match 93% of the UK population wi

295 Among the 86 we typed, we identified 72 R variants and 14 H variants.

296 In the SPD, participants first recalled (typed) what they did during each hour of the previous da

297 to detect association with a variant that is typed with a moderate amount of missing data.

298 of an adenovirus type 5 (Ad5) capsid pseudo-typed with an Ad35 fiber.

299 times background over regions of size 10 kb typed with just 1 marker per 5 kb (alpha = 0.05).

300 We used autopsy tissue from four mutation-typed WS patients to characterize pathologic and genomic