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1 ic number of ATPs is consumed in degrading a ubiquitinated protein.
2 me is a large protease complex that degrades ubiquitinated proteins.
3 n family, which regulates the degradation of ubiquitinated proteins.
4 ased Bax by 140% (P<0.05) and also increased ubiquitinated proteins.
5 tions can affect proteasome interaction with ubiquitinated proteins.
6 perone proteins, proteasomal components, and ubiquitinated proteins.
7 basal ATP consumption and degradation of non-ubiquitinated proteins.
8 100 nM) and causes accumulation of cellular ubiquitinated proteins.
9 ning paralleled by accumulation of insoluble ubiquitinated proteins.
10 criteria necessary for the interpretation of ubiquitinated proteins.
11 led to exert protection or blunt the rise in ubiquitinated proteins.
12 damage sites in part through recognition of ubiquitinated proteins.
13 ivity, but significant affinity for cellular ubiquitinated proteins.
14 hat WRNIP1 plays a role in the metabolism of ubiquitinated proteins.
15 stability, function, and/or localization of ubiquitinated proteins.
16 nd occurrence of inclusion bodies containing ubiquitinated proteins.
17 disease, exhibit inclusion bodies containing ubiquitinated proteins.
18 ransport (ESCRT) [10-12], small GTPases, and ubiquitinated proteins.
19 a marked decrease in association of VCP with ubiquitinated proteins.
20 th dynein and induces marked accumulation of ubiquitinated proteins.
21 -mediated degradation and an accumulation of ubiquitinated proteins.
22 lexes that selectively degrade intracellular ubiquitinated proteins.
23 a proteasome inhibitor was used to stabilize ubiquitinated proteins.
24 on dissociation (IRMPD), for the analysis of ubiquitinated proteins.
25 ated factor that mediates the degradation of ubiquitinated proteins.
26 branched synthetic ubiquitin chains and from ubiquitinated proteins.
27 of high molecular weight TDP-43 species and ubiquitinated proteins.
28 assayed protein solubility and the amount of ubiquitinated proteins.
29 s accompanied by an increase in the level of ubiquitinated proteins.
30 , accompanied by an increase of oxidized and ubiquitinated proteins.
31 western blotting quantities of endogenously ubiquitinated proteins.
32 ysis and enhance proteasomal specificity for ubiquitinated proteins.
33 mployed unanchored ubiquitin chains and mono-ubiquitinated proteins.
34 ion, KO of ubqln also caused accumulation of ubiquitinated proteins.
35 ability to bind, deubiquitinate, and degrade ubiquitinated proteins.
36 ed p62-independent autophagic degradation of ubiquitinated proteins.
37 autophagic substrates such as p62, LC3II and ubiquitinated proteins.
38 ondrial impairment led to down-regulation of ubiquitinated-proteins, 26S proteasome disassembly, and
39 fication and quantification of more than 400 ubiquitinated proteins, a fraction of which were found t
40 nits resulted in significant accumulation of ubiquitinated proteins accompanied by cessation of cell
44 n Clcc1-deficient granule cells in vivo, and ubiquitinated proteins accumulate in these neurons befor
45 the nervous system, pathologic aggregates of ubiquitinated proteins accumulate only in specific neuro
47 including potentially toxic aggregate-prone ubiquitinated proteins, accumulate in Pompe myofibers an
48 that they exhibit reduced ability to degrade ubiquitinated proteins, accumulate short-lived GFPu, and
51 over, the overexpression of PARK2 diminished ubiquitinated proteins accumulation, improves its target
52 A proteomics strategy was used to identify ubiquitinated proteins after preconditioning ischemia.
54 uction in AlaRS editing efficacy resulted in ubiquitinated protein aggregates and mitochondrial defec
55 autophagy defects including accumulation of ubiquitinated protein aggregates and p62/SQSTM1, deficie
56 t pressure overload promotes accumulation of ubiquitinated protein aggregates in the left ventricle,
57 sis in cerebellum as well as accumulation of ubiquitinated protein aggregates without any deficiency
58 changes, including gliosis, accumulation of ubiquitinated protein aggregates, lipofuscinosis, and en
60 -weight alpha-synuclein, and the presence of ubiquitinated protein aggregates, recapitulating many of
63 m conjugation to itself or a diffuse pool of ubiquitinated proteins already present in the microsomes
65 efoldin increased the level of SDS-insoluble ubiquitinated protein and reduced cell viability in lact
74 ved from L110R MM-1alpha mice, the levels of ubiquitinated proteins and cytotoxicity were higher in L
75 ration was accompanied by an accumulation of ubiquitinated proteins and decreased xeroderma pigmentos
76 resistant parasites exhibit lower levels of ubiquitinated proteins and delayed onset of cell death,
78 receptor hRpn13, triggering accumulation of ubiquitinated proteins and endoplasmic reticulum stress-
79 correlate with an increased accumulation of ubiquitinated proteins and expression of CIN85/RukL in p
80 Our data suggest that recruitment of both ubiquitinated proteins and LC3-II by p62 directs ubiquit
81 es the selectivity of the 26S proteasome for ubiquitinated proteins and links their deubiquitination
82 ssue proteasome activity and accumulation of ubiquitinated proteins and natural proteasome substrates
83 ormal accumulations of amyloid-beta peptide, ubiquitinated proteins and other autophagic substrates w
84 proteins containing the UBAb interacted with ubiquitinated proteins and polyubiquitin chains in vitro
86 f desmin filaments caused an accumulation of ubiquitinated proteins and rapid destruction of myofibri
87 easomal deubiquitinating enzyme that cleaves ubiquitinated proteins and releases ubiquitin chains.
88 A domains prevent efficient interaction with ubiquitinated proteins and result in poor suppression of
89 tion was associated with the accumulation of ubiquitinated proteins and reversible opacification of t
90 nd SW480 cell lines leads to accumulation of ubiquitinated proteins and several proteasome target pro
91 which resulted in ER stress, accumulation of ubiquitinated proteins and subsequent ER dilation, contr
92 hows that IBMPFD mutant expression increases ubiquitinated proteins and susceptibility to proteasome
93 d histone deacetylase 6 recognize aggregated ubiquitinated proteins and target them for autophagy in
96 ytic activity of the 20S proteasome, because ubiquitinated proteins and the peptidase activities of 2
98 ncer cells, resulting in the accumulation of ubiquitinated proteins and the proteasome target protein
100 overexpression determines an accumulation of ubiquitinated proteins and this event requires the N-ter
101 sitive) cells results in the accumulation of ubiquitinated proteins and three natural proteasome subs
102 and in vivo by WA results in accumulation of ubiquitinated proteins and three proteasome target prote
103 R23B, were found to bind specifically to K48-ubiquitinated proteins and to stimulate proteasome bindi
104 n-binding domains, thereby bringing together ubiquitinated proteins and ubiquitin receptors to execut
107 DsRed marker protein, (2) a higher level of ubiquitinated proteins, and (3) coordinated induced expr
108 ance of glycoconjugates, alpha-synuclein and ubiquitinated proteins, and abrogation of inflammatory r
110 e main non-lysosomal degradative pathway for ubiquitinated proteins, and autophagy, a lysosome-mediat
111 ia increased their connectivity, accumulated ubiquitinated proteins, and decreased their respiration.
112 gulation of iron metabolism, accumulation of ubiquitinated proteins, and incorporation of elements of
113 (DUBs) proteolytically cleave ubiquitin from ubiquitinated proteins, and inhibition of DUBs that resc
115 of cullins and noncullin proteins, increased ubiquitinated proteins, and stabilized a surrogate subst
116 ulated reactive oxygen species (ROS) damage, ubiquitinated proteins, and the multi-functional adapter
117 oteins, including amyloid-beta (Abeta), tau, ubiquitinated-proteins, apolipoprotein E, and alpha-synu
122 udies have shown that unfolded and misfolded ubiquitinated proteins are degraded not only by proteaso
123 y neurodegenerative disorders, aggregates of ubiquitinated proteins are detected in neuronal inclusio
125 Intrasarcoplasmic amyloidosis and increased ubiquitinated proteins are observed in human failing hea
128 otein (GFAP), small heat shock proteins, and ubiquitinated proteins are termed Rosenthal fibers and c
132 activity, which preceded the accumulation of ubiquitinated proteins as detergent/salt-insoluble aggre
133 s, a scaffold protein that co-localizes with ubiquitinated protein at the 30 days post irradiation ti
138 disorders associated with the aggregation of ubiquitinated proteins by impairing 26 S proteasome acti
139 compared the turnover dynamics of endogenous ubiquitinated proteins by proteasomes and autophagy by a
140 play synergistic roles in the recognition of ubiquitinated proteins by the proteasome, and loss of bo
144 deubiquitination and allows for selection of ubiquitinated proteins capable of being unfolded and eff
145 normal storage of carbohydrates, lipids, and ubiquitinated proteins, combined with marked accumulatio
146 that this lack of proteasomal processing of ubiquitinated proteins constitutes the primary defect in
148 ion is accompanied by a decrease of the poly-ubiquitinated protein content and co-immunoprecipitates
149 HDAC6 mutants, we show that HDAC6 binding to ubiquitinated proteins controls the duration of HSF1 act
150 revealed that this protein is essential for ubiquitinated protein degradation and for parasite survi
151 tinated proteins in the knock-out cells, but ubiquitinated protein degradation was decreased during s
152 ome, a cylindrical organelle that recognizes ubiquitinated proteins, degrades the proteins, and recyc
154 rison with normal tissues by accumulation of ubiquitinated proteins despite elevated proteasome level
156 ing in accumulation of oxidative lesions and ubiquitinated proteins during heat stress in CWD clams.
157 Usp14 are much more active in degrading non-ubiquitinated proteins (e.g. Sic1) than WT particles.
158 on-gamma: (1) that immunoproteasomes degrade ubiquitinated proteins faster than the constitutive prot
159 tein catabolism could induce accumulation of ubiquitinated proteins followed by significant cell stre
160 nizing the Lys--Gly-Gly (diGly) remnant from ubiquitinated proteins following trypsinolysis have prov
164 entify 374 diglycine-modified lysines on 236 ubiquitinated proteins from HEK293 cells, including 80 p
168 ing protein (VCP) subsequently dislodges the ubiquitinated proteins from the ER and chaperones them t
171 tion of the proteasome's capacity to degrade ubiquitinated proteins has received little attention, al
173 c complex responsible for the degradation of ubiquitinated proteins, have demonstrated remarkable the
174 wn role in mediating the degradation of poly-ubiquitinated proteins, HDAC6 selectively interacted wit
175 in-mediated processes such as degradation of ubiquitinated proteins (i.e. EGFR, Mdm-2, and Siah-1).
177 f TUNEL staining and lack of accumulation of ubiquitinated protein in vacuoles of motor and sensory n
178 ation scheme for the isolation of a specific ubiquitinated protein in which affinity moieties are fus
183 evalence of receptors such as agglutinin and ubiquitinated proteins in ciliary ectosomes suggests tha
185 strate accumulation of P56S VAPB protein and ubiquitinated proteins in cytoplasmic inclusions, select
186 oteasome inhibition and accumulation of poly-ubiquitinated proteins in diffuse large B-cell lymphoma
188 veloped an approach for the visualization of ubiquitinated proteins in living cells designated ubiqui
189 with this view, NAC abolished an increase in ubiquitinated proteins in MG132-treated astrocytes.
191 utophagy inhibition (96 h) failed to elevate ubiquitinated proteins in rat cortical neurons, although
193 formation of p62/SQTM1 aggregates containing ubiquitinated proteins in structures known as aggresome-
195 ere we show that tau increased the levels of ubiquitinated proteins in the brain and triggered activa
198 ditions there was no effect on the levels of ubiquitinated proteins in the knock-out cells, but ubiqu
199 e and protein level approaches to enrich for ubiquitinated proteins in the presence and absence of HR
200 profiling both the entire yeast proteome and ubiquitinated proteins in wild-type and ubiquitin K11R m
201 By determining the differential abundance of ubiquitinated proteins in yeast mutated for NPL4 and UBC
202 e observed the corresponding accumulation of ubiquitinated-proteins in NSCLC cell lines and tissues a
204 uitinated proteins and LC3-II by p62 directs ubiquitinated proteins, including I-kappaBalpha, to the
205 abnormal ubiquitination and accumulation of ubiquitinated proteins, including TDP-43 and a SCF(Cycli
206 P-43) accumulation is the major component of ubiquitinated protein inclusions found in patients with
208 in 43 (TDP-43) is the principal component of ubiquitinated protein inclusions present in nervous tiss
210 hibition, the cellular content of K48-linked ubiquitinated proteins increased without any change in p
211 ytes exhibit higher than wild-type levels of ubiquitinated proteins, increased levels of protein oxid
212 es growth retardation and an accumulation of ubiquitinated proteins, indicative of a cellular stress
214 t that this early and persistent increase in ubiquitinated proteins induced by IBMPFD mutations in p9
218 respect to endosomal movement and sorting of ubiquitinated proteins into lysosomes, its function in m
219 proteins might participate in the sorting of ubiquitinated proteins into multivesicular bodies (MVBs)
221 or K63-ubiquitin chains determine whether a ubiquitinated protein is targeted for proteasomal degrad
222 ubiquitin, indicating that incorporation of ubiquitinated proteins is a later event in the disease p
225 of trafficking machinery components to bind ubiquitinated proteins is known to have a function in ca
227 Here, using shotgun proteomics, we map the ubiquitinated protein landscape during embryonic stem ce
228 atment with a proteasome inhibitor increases ubiquitinated protein levels and shortens the life span
229 The proteasome inhibitor epoxomicin raised ubiquitinated protein levels at least 3-fold higher than
230 ed production of reactive oxygen species and ubiquitinated protein levels, while the de-ubiquitinatio
236 protein inclusions and high-molecular-weight ubiquitinated proteins, markers of UPS dysfunction.
237 HC class I presentation, they do not degrade ubiquitinated proteins more efficiently than constitutiv
238 ions in Drosophila caused an accumulation of ubiquitinated proteins, neurodegeneration, larval-crawli
240 berrant membrane structures, accumulation of ubiquitinated proteins on membranes, and axon degenerati
242 e we describe UbiCRest, in which substrates (ubiquitinated proteins or polyubiquitin chains) are trea
243 rected to the LDs via SQSTM1, which bound to ubiquitinated proteins, possibly including perilipin 1,
244 Ubiquitin remnant profiling of the multi-ubiquitinated proteins proliferating cell nuclear antige
245 V), mutant profilin1 aggregation, abnormally ubiquitinated proteins, reduced choline acetyltransferas
246 inant protein species in the inclusions, and ubiquitinated proteins represent only a minor component;
247 e, suggesting that the increase in levels of ubiquitinated proteins resulting from avicin G treatment
248 s with CB-5083 leads to accumulation of poly-ubiquitinated proteins, retention of endoplasmic reticul
249 nated substrate protein(s) possibly allowing ubiquitinated protein(s) to be degraded by the proteosom
251 control cells and treated with PKA degraded ubiquitinated proteins, small peptides, and ATP more rap
253 ry, including Ub(G76V)-GFP, a representative ubiquitinated protein substrate that is accumulated in t
256 yeast Ggas is required to direct sorting of ubiquitinated proteins such as general amino acid permea
258 e that is responsible for the degradation of ubiquitinated protein targets in all eukaryotic cells.
261 or expanded ataxin-3 binds a broad range of ubiquitinated proteins that accumulate when the proteaso
262 anded ataxin-3 both co-precipitate with poly-ubiquitinated proteins that accumulate when the proteaso
263 oquine (CQ) led to a massive accumulation of ubiquitinated proteins that correlated with increased ce
264 one resulted in an accumulation of puncta of ubiquitinated proteins that was further enhanced by the
266 he Rad23 family of proteins is known to bind ubiquitinated proteins through its two ubiquitin-associa
267 gnificant efforts have been made to identify ubiquitinated proteins through proteomics studies, but t
268 nactive ataxin-3 (normal or expanded) causes ubiquitinated proteins to accumulate in cells, even in t
269 Instead, expression of p97(E578Q) causes ubiquitinated proteins to accumulate on ER membranes and
273 a new strategy for the chemical synthesis of ubiquitinated proteins to generate a set of well-defined
274 id assay, we analyzed the initial binding of ubiquitinated proteins to purified 26S particles as an i
276 al protein and a signaling hub that shuttles ubiquitinated proteins to the lysosome during autophagy.
277 te ubiquitin recognition and the delivery of ubiquitinated proteins to the proteasome by autoinhibiti
278 e the delivery of hydrophobic and aggregated ubiquitinated proteins to the proteasome for degradation
279 a variety of cellular processes by targeting ubiquitinated proteins to the proteasome for degradation
281 ains, and may participate in the delivery of ubiquitinated proteins to the proteasome through docking
283 ned Hspa1B (heat shock protein 1B hsp70) and ubiquitinated proteins, trapped other cytoskeletal prote
284 tant is altered in interaction with SUG1 and ubiquitinated proteins, triggering constitutive caspase-
285 tic inhibition of autophagy fails to elevate ubiquitinated proteins unless the proteasome is affected
286 th their associated components, also contain ubiquitinated proteins, vimentin, heat-shock protein 72,
289 In wild-type mice, an elevated level of ubiquitinated proteins was observed during muscle reload
290 in both ventilated groups, and the amount of ubiquitinated proteins was significantly and similarly e
291 actories that were regularly associated with ubiquitinated proteins, we conclude that reovirus factor
297 sulted in the dual accumulation of viral and ubiquitinated proteins, which led to enhanced ER stress,
298 c capability to extract, unfold, and degrade ubiquitinated proteins while releasing bound partners un
300 reduced PSMD12 levels and an accumulation of ubiquitinated proteins without any impairment of proteas
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