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1 mplex with lipid A disaccharide backbone and unliganded.
2 equilibrium constants, we estimate that the unliganded AChR gating constant is E(0) approximately 6.
3 n AChRs is approximately 1.15 x 10(-7); (ii) unliganded AChRs open for approximately 80 micros, once
4 ystal structure of a synaptic tetramer of an unliganded activated mutant (M114V) of the G-segment inv
7 rikingly different conformations of LIMBS in unliganded alphaIIbbeta3 versus alphaVbeta3, the result
8 refolding and its crystal structures in the unliganded and 3-isobutyl-1-methylxanthine (IBMX) bound
10 s CD4-bound state, compare this structure to unliganded and antibody-bound forms to identify structur
11 1 ortholog from the giant Mimivirus (MvNei1) unliganded and bound to DNA containing tetrahydrofuran (
12 ions (CDRs) of the TCR seen in comparison of unliganded and bound X-ray structures, NMR characterizat
13 igate full-length, glycosylated HIV gp120 in unliganded and CD4-bound forms by using small-angle X-ra
16 onding loop in MvNei1 is ordered in both the unliganded and furan-bound structures, unlike other Fpg/
17 namics, respectively, demonstrates that both unliganded and glucose-bound enzymes sample multiple con
19 utative binding region of SrpA (SrpABR) both unliganded and in complex with a synthetic disaccharide
21 results uncover a paradoxical action of the unliganded and ligand-activated PPARgamma in regulating
24 genes, we identified genes regulated by the unliganded and liganded forms of ERalpha and ERbeta in U
31 nogen o-gp140DeltaV2TV1, in both its native (unliganded) and CD4-induced (liganded) states by cryoele
32 AR adopted a conformation that resembled the unliganded AR (apo-AR), precluding nuclear localization
34 rminal effector-binding domain of CggR, both unliganded as well as in complex with the four ligands a
38 in ANS emission observed in the presence of unliganded ATH reflects the interaction of these hydroph
39 ts a compact or "closed" domain arrangement, unliganded avian SC is flexible and exists in both close
40 al comparison of DMATase in the complex with unliganded bacterial DMATase provides a molecular basis
41 egulatory sites; ii) a simulated ensemble of unliganded Bcl2 structures reveals extensions of a known
44 lex, and (d) the binding interaction between unliganded C-Mad2 and Cdc20 cannot be catalyzed by a C-M
45 a C-Mad2-Cdc20 complex >300-fold slower than unliganded C-Mad2, (b) a stable C-Mad2-Mad1 core complex
47 arison of the structures of the liganded and unliganded CAP suggests that cAMP stabilizes the active
50 this electrostatic interaction also promotes unliganded channel opening in the absence of ATP binding
53 structural models that likely represent the unliganded closed-channel conformation and the fully lig
57 ranched-chain amino acids, we concluded that unliganded CodY cannot repress transcription in vivo and
58 ghts, we determined the crystal structure of unliganded CodY from Bacillus subtilis revealing a 10-tu
60 e that PBPs typically adopt either an "open" unliganded configuration or a "closed" liganded one.
62 s of the so-far structurally uncharacterized unliganded conformation of HIV-1 gp120, which may prove
63 that bind conserved epitopes exposed on the unliganded conformation of the HIV-1 envelope glycoprote
64 econdary structure elements reveals that the unliganded conformations of both glycoprotein (gp)120 an
66 tically, we determined crystal structures of unliganded core gp120 from HIV-1 clades B, C, and E.
67 re, we report the X-ray crystal structure of unliganded DCS at 2.4 A resolution and the structure of
69 tically for the liganded complex compared to unliganded demethylase, which may correspond to the obse
70 ngaging the proapoptotic activity induced by unliganded dependence receptors are in late-stage precli
71 gate directly the effect of the JM domain on unliganded dimer stability of FGFR3, a receptor that is
72 ns are critical for the establishment of the unliganded dimer structure, and for the transition to th
73 point to a coordinated stabilization of the unliganded dimeric state of FGFR3 by its JM and TM domai
77 ny of these receptors are capable of forming unliganded dimers that are likely important intermediate
79 liganded during human pregnancy, it becomes unliganded during both term and preterm labour as a resu
80 presses genes that are normally repressed by unliganded EcR, thereby allowing wing patterning to prog
81 catalytic phosphorylation of tyrosine 845 on unliganded EGFR monomers is suppressed by vesicular recy
82 region studied in the context of either CD4-unliganded Env trimer or the gp41 peptide in the unbound
83 contribute to interprotomer contacts in the unliganded Env trimer, undergo rearrangement upon CD4 bi
87 s where the loop is generally ordered in the unliganded enzyme or in complexes with a lesion, and dis
88 ed to the catalytic site than in the case of unliganded enzyme or the WT enzyme-Mg(2+)-3-hydroxygluta
91 atible with substrate binding as seen in the unliganded enzyme; (ii) the active "on state" seen in in
93 Indeed, our data reveal that activation by unliganded ERalpha and repression by estrogen-activated
94 emonstrated that in MCF7 breast cancer cells unliganded ERalpha binds to more than 4,000 chromatin si
95 re, these results suggest a pivotal role for unliganded ERalpha in controlling a fundamental caretake
97 ased upon ERalpha silencing, suggesting that unliganded ERalpha participates, together with other fac
98 t virtually no gene regulation occurred with unliganded ERalpha, whereas many genes were regulated by
99 strogen-induced binding sites, we found that unliganded-ERalpha binding is specifically linked to gen
101 ing, imply that the tethered conformation of unliganded ErbBs evolved to prevent crosstalk among ErbB
105 Trp/Arg(H100)Trp double mutant (1E9dm) as an unliganded Fab at 2.05 A resolution and in complex with
107 his approach we observed homodimerization of unliganded FGFR1 that is independent of its surface dens
109 rmation being significantly populated in the unliganded FKBP51 domain is more consistent with a confo
110 xide (TMAO), an osmolyte that stabilizes the unliganded folded form of the protein, enabled us to stu
111 otein fromPseudomonas putidaCSV86 (ppGBP) in unliganded form (2.5 A) and complexed with glucose (1.25
112 g from Archaeoglobus fulgidus, AfUbiA, in an unliganded form and bound to Mg2+ and two different isop
113 the X-ray crystal structures of NolR in the unliganded form and complexed with two different 22-base
114 ructures of the catalytic domain of hPARG in unliganded form and in complex with three inhibitors: AD
120 a recently published X-ray structure of the unliganded form of the ovine BMPR-II ECD as a guide.
122 e report the structure of this domain in its unliganded form, allowing definition of the structural c
123 of the catalytic core of yeast Pol alpha in unliganded form, bound to an RNA primer/DNA template and
127 ructural comparisons of various liganded and unliganded forms of CCR and CAD2 highlight substantial c
128 uctural comparisons of antibody-liganded and unliganded forms of CD3epsilon from a single species, wh
131 (proportional, variant 1/KD(in)) and slower unliganded "free" carrier transit from inside to outside
133 dels of predominant solution conformation of unliganded full-length Myo1c and Myo1c bound to Neph1 we
134 ti-CD4i MAbs, including MAb 21c, which bound unliganded, full-length gp120 held in a constrained conf
137 y mutations of these prolines with regard to unliganded gating (DeltaG0) and the affinity change for
138 ng equilibrium constant only by changing the unliganded gating equilibrium constant (E(0)) and did no
142 steric" cycle as follows: diliganded gating, unliganded gating, dissociation from the C(losed) confor
144 proteolysis, we map the site of disorder in unliganded GCK to a 30-residue active-site loop that clo
146 loop and quaternary interactions restraining unliganded gp120 from "snapping" into this conformation.
147 extraordinary reduction in entropy, neither unliganded gp120 nor free CD4 was substantially unstruct
149 ence suggests are proximal to the V3 loop in unliganded gp120, also resulted in decreased gp120-gp41
152 e beta-switch region, which is a loop in the unliganded GPIb alpha but switches to a beta-hairpin in
153 catenin binding partners, indicating that an unliganded groove is absolutely required for an orientat
155 putational methods to distinguish individual unliganded HA trimers from those that have bound C179 an
156 tabilizing its open state and the opening of unliganded HCN1, which occurs as though already disinhib
157 strate here that in epidermal keratinocytes, unliganded heterodimers of vitamin D receptor (VDR)/RXR-
158 found moderate levels of PAG associated with unliganded HIV-1 and SIV virions incubated with the thre
162 e beta/alpha-barrel structures with those of unliganded HMGCL and R41M reveals substantial difference
163 Here we report the 2.6A crystal structure of unliganded human SC (hSC) and comparisons with a 1.7A st
164 FbpA, including one in which the protein was unliganded (i.e., apoFbpA) and one in which the protein
165 conformation between the IDE-ATP complex and unliganded IDE, but regions of the active site and C-ter
166 ed at the heterotetrameric interfaces in the unliganded IDH hetero-octamer are reduced in the ligand-
168 lin bound that allows direct comparison with unliganded IR and suggests a mechanism by which ligand r
171 d structure, we report two structures of the unliganded light chain with and without the Zn(II) cofac
173 rier complex requires a higher proportion of unliganded low-affinity inside sites (proportional, vari
174 n crystals, the liganded (high-affinity) and unliganded (low-affinity) conformations differ in orient
175 hat 1) the Fab-Fc or Fab-Fab interactions in unliganded mAbs are retained in digested products, and 2
177 In X-ray solution structures, the CARDs in unliganded MDA5 are flexible, and RNA binds on one side
178 mical and structural studies reveal that the unliganded, multidomain cIAP1 sequesters the RING domain
180 tation alters ectodomain structure such that unliganded mutant EGFR adopts an extended, dimerization-
183 leading to the loosening of a flap, which in unliganded NMT structures, occludes the protein substrat
186 that spurious transcriptional activation by unliganded nuclear receptors is inhibited by histone lys
188 etrahedral oxydianions, which bind weakly to unliganded OMPDC and tightly to the enzyme-transition st
190 rably larger than DHEA, can bind only to the unliganded (open) enzyme, whereas DHEA binds both the op
191 me), could be appropriately explained by the unliganded, open crystal structure in that it both yield
194 d drugs, the lack of a BmrR structure in its unliganded or apo (DNA free and drug free) state hinders
195 there are several structures of Nei enzymes unliganded or bound to an abasic (apurinic or apyrimidin
197 ween the BeF(3)(-)-activated complex and the unliganded (or apo) complex determined previously reveal
198 t be coupled to intracellular asymmetry with unliganded partners favoring the activator kinase positi
199 They also suggest possible actions of the unliganded (passive) gating ring or added short tails on
200 nt from those of any known structures of the unliganded PDE5 and its complexes with the inhibitors.
203 ned from small angle x-ray scattering of the unliganded PimA and the PimA.GDP complexed forms clearly
205 imine (lambda(max) 416 nm; A), two different unliganded PLP states of the enzyme (lambda(max) at 409
207 nd negated RANTES induction, suggesting that unliganded PPARgamma is obligatory for NF-kappaB signali
209 enome-wide microarray analyses revealed that unliganded PR-B induced robust expression of a subset of
215 most bound-like conformation in ensembles of unliganded protein structures and providing input for fr
216 ntegral component of secretory Abs, or as an unliganded protein that can mediate interactions with ba
217 t to be detectable from the structure of the unliganded protein, even when substantial conformational
218 ocking the set of NAMFIS conformers into the unliganded proteins with GLIDE followed by MM-GBSA scori
220 ity signatures of the TCRs, the structure of unliganded QL9-L(d) was solved and compared to structure
223 ilon-methionine and obtained HSQC spectra of unliganded receptor as well as receptor bound to an inve
225 epends on both the intrinsic tendency of the unliganded receptor to open and the amount of agonist bi
227 showed a ratio that was identical to that of unliganded receptors, agonist-bound D2 receptor-ligand c
229 Pro236 in a position similar to that in the unliganded reverse transcriptase structure, and the dist
231 ing pocket, which was previously observed in unliganded RT, is dramatically suppressed by efavirenz.
237 nooxygenase, stachydrine demethylase, in the unliganded state (at 1.6 A resolution) and in the produc
239 Env proteins are kinetically trapped in the unliganded state and require the drug to negotiate CD4-i
242 g cavity of CD1a is largely preserved in the unliganded state because of persistent electrostatic int
244 ane envelope glycoprotein that stabilize the unliganded state by modulating the transitions from the
245 v to change conformation from the metastable unliganded state in response to the binding of ligands (
246 the overall shape of ct-AChBP in the apo or unliganded state is similar to that of homologues with k
247 ciency virus (SIV) must be maintained in the unliganded state of the envelope glycoprotein trimer.
249 d roughly 20-fold more rapid exchange in the unliganded state than regions of low diversity (outer do
250 gp120 and regulates Env transitions from the unliganded state to downstream conformations.IMPORTANCE
253 in decreased gp120-gp41 association (in the unliganded state) and decreased chemokine receptor bindi
254 rimeric Env displayed on native HIV-1 in the unliganded state, in complex with the broadly neutralizi
255 istic insights into the metastability of the unliganded state, receptor-induced conformational change
256 tes HIV-1 entry by rearranging from a mature unliganded state, through receptor-bound intermediates,
262 th the cytoplasm and nucleus that stabilizes unliganded steroid receptors, controls the catalytic act
264 chanism of control involving deformations in unliganded structure from a functionally critical state
265 on where a region that was disordered in the unliganded structure is now observed in the active site
266 Here we report the first, to our knowledge, unliganded structure of EBOV GP, and high-resolution com
270 ximab; however, unlike Cetuximab, one of the unliganded structures in S25-26 shows significant order
272 lex at a resolution of 2.1 A, as well as the unliganded structures of D8 and LA5-Fab at resolutions o
273 ) and murine PlxnA2(1-4)-Sema6A(ecto)), plus unliganded structures of PlxnA2(1-4) and Sema6A(ecto).
275 tal structure of the catalytic domain of the unliganded TbrPDEB1 and its use for the in silico screen
277 stid PDECs and the crystal structures of the unliganded TcrPDEC1 catalytic domain and its complex wit
281 g a simple two-state transition from an open-unliganded to closed-liganded state during the transport
283 nce and presence of hormone, suggesting that unliganded TR engagement with repressive complexes on ch
286 er examine NCoR1's role in repression by the unliganded TR, we deleted NCoR1 in the livers of euthyro
288 bility of developing selective modulators of unliganded transcription factors to dial out adverse eff
291 ion of the stability of the V3 pocket in the unliganded trimer or disruption of favorable V3/pocket i
294 angement similar to that displayed by native unliganded trimers on the surface of intact HIV-1 virion
295 erative pathways and a new pathway involving unliganded TrkA and transcriptional regulation of the pr
297 apidly on CD4-liganded virions and slowly on unliganded virions, although both reached similar levels
300 nded CAP containing a D138L mutation and the unliganded WT CAP were determined at 2.3 and 3.6 A resol
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