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1 endent ATPase activity and the extent of RNA unwinding.
2 ell it tolerates potential roadblocks to DNA unwinding.
3 s the degree to which re-winding counteracts unwinding.
4 gions that depend strongly on eIF4A-mediated unwinding.
5 have mostly been ignored with regard to DNA unwinding.
6 significantly affecting ATP-dependent duplex unwinding.
7 ance of the SEW model for hexameric helicase unwinding.
8 the coupling between ATP hydrolysis and RNA unwinding.
9 into the Brr2 helicase active site ready for unwinding.
10 o be directly involved in regulating U1/5'ss unwinding.
11 ble-stranded RNA, resulting in gradual helix unwinding.
12 08-like modules that are responsible for RNA unwinding.
13 spliceosomal activation in addition to U4/U6 unwinding.
14 creating torsional strain and leading to DNA unwinding.
15 nsuring that synthesis is tightly coupled to unwinding.
16 shaped hexamers that encircle DNA for duplex unwinding.
17 ment of the GINS helicase activator, and DNA unwinding.
18 displaced strand and duplex coordinates DNA unwinding.
19 with blunt-ends or 3'-ssDNA overhangs by DNA unwinding.
20 ' ssDNA overhang is required to initiate DNA unwinding.
21 d is a less understood characteristic of DNA unwinding.
22 to gain access to ssDNA and facilitating DNA unwinding.
23 tations, blocks on either strand inhibit CMG unwinding.
24 iation that functions beyond its role in RNA unwinding.
25 ifically with the excluded DNA strand during unwinding.
26 nterstrand distance and can only elongate by unwinding.
27 trand cross-link in the dsDNA that prevented unwinding.
28 ng structural and mechanistic aspects of DNA unwinding.
29 elucidate the structural basis of duplex DNA unwinding.
30 ivities, including DNA binding, nicking, and unwinding.
31 g several kinetic parameters associated with unwinding.
32 the Thermobifida fusca type I-E Cascade: (1) unwinding 11 bp of dsDNA at the seed-sequence region to
33 ith the PIC and plays important roles beyond unwinding 5'-UTR structure is consistent with a recent p
34 helicase exhibited greater processivity when unwinding a DNA fork compared to a ss/ds DNA junction su
35 x RNA helicase that is responsible for U4/U6 unwinding, a critical step in spliceosomal activation.
36 '-ended single-stranded DNA during continued unwinding; a crevice between RecB and RecC increasingly
40 insight into the regulation of nucleic acid unwinding activity and introduces a monomeric superhelic
41 Cas9 proteins have limited dsDNA binding and unwinding activity and promiscuous guide RNA specificity
42 s with oligomerization and thereby modulates unwinding activity and RNA affinity of the helicase.
43 king of a helicase monomer with undetectable unwinding activity converts it into a superhelicase that
45 at MOV10L1 exhibits 5'-to-3' directional RNA-unwinding activity in vitro and that a point mutation th
50 e used to study the assembly pathway and DNA unwinding activity of the bacteriophage T4 helicase-prim
51 an activated gene, but also impairs the DNA unwinding activity of XPD and the nucleotide excision re
55 otein, the C-terminal helicase domain had no unwinding activity on RNA substrates and had significant
59 alanine causes an even greater reduction in unwinding activity, which is somewhat surprising as this
71 bed, obtaining data and analyzing results of unwinding and ATPase assays takes approximately 4 h.
72 no acid change in the KH domain, had reduced unwinding and binding activates on RNA and DNA substrate
73 mechanism that controls eIF4AI-mediated mRNA unwinding and can guide further mechanistic studies on o
74 its Cas3, a nuclease-helicase that catalyzes unwinding and cleavage of foreign double-stranded DNA (d
76 zyme complexes are highly processive, duplex unwinding and degrading machines that require tight regu
77 which MOV10L1 RNA helicase activity promotes unwinding and funneling of the single-stranded piRNA pre
79 play complex motion, which includes winding, unwinding and helix inversion, as dictated by their init
80 chanism of nucleosome unfolding in which DNA unwinding and histone protein disassembly are coupled.
81 r data reveal conserved mechanisms for U4/U6 unwinding and indicate telestem dynamics are critical fo
85 leic acid processing enzymes involved in DNA unwinding and polymerization, our results suggested the
86 st that mycobacterial HR can proceed via DSB unwinding and protein capture of the displaced 3'-OH sin
87 t couple the energy of ATP hydrolysis to the unwinding and remodeling of structured DNA or RNA, which
88 ng optical tweezers, we measure the rates of unwinding and rewinding for these two states and show th
90 rein RecQ melts dsDNA internally to initiate unwinding and subsequently assembles at the fork into a
92 naA assembles at the origin and promotes DNA unwinding and the assembly of a replication initiation c
93 trands encircled by the helicase ring during unwinding and the ring orientation at the replication fo
94 in plays critical roles in NTP-dependent RNA unwinding and translocation during viral replication.
95 -hairpin), showed a decrease in DNA binding, unwinding, and annealing, as expected for a functional R
96 angular and linear motions such as torsion, unwinding, and sliding in addition to the previously rep
97 ated mechanic effects like local elongation, unwinding, and softening of the DNA often remain in ques
98 o cleavage complex, comet, DNA intercalating/unwinding, and Topo IIalpha-mediated ATP hydrolysis assa
99 the frequency of initiation and the rate of unwinding are highly dependent on RecQ concentration.
100 entify binding sites for ssDNA during SsoMCM unwinding as well as validating the importance of the SE
103 lecule Forster resonance energy transfer and unwinding assays to identify interactions that promote U
104 e mechanism of its helicase function, RecBCD unwinding at low adenosine triphosphate (ATP) (2-4 muM)
105 helicase-primase complex is required for DNA unwinding at the replication fork and synthesis of prime
106 s of RHA are responsible for such repetitive unwinding behavior in addition to providing an increased
107 allele of MCM10 that stimulates initial DNA unwinding but is defective in replication elongation and
110 o a stepwise decrease of Brr2-mediated U4/U6 unwinding, but that unwinding is largely restored by a B
113 rved aromatic loop (AL) is important for DNA unwinding by bacterial RecQ [23, 24] and truncated RECQ1
114 We show that Topo IIIalpha stimulates DNA unwinding by BLM in a manner that is potentiated by RMI1
120 , DnaA filaments assemble and promote duplex unwinding by engaging and stretching a single DNA strand
121 for the same substrate, hence prominent DNA unwinding by hDNA2 alone can only be observed using the
122 generalizing a previous model of processive unwinding by helicases, we provide a unified framework f
130 amics was coupled to RecBCD entering into an unwinding-competent state that required a sufficiently l
131 nal dynamics of the RecBCD-DNA complex in an unwinding-competent state, arising, in part, by an enzym
136 s recombinogenic single-stranded DNA ends by unwinding DNA and cutting it a few nucleotides to the 3'
137 is the replicative helicase responsible for unwinding DNA during archaeal and eukaryal genome replic
138 cialized helicases play an important role in unwinding DNA structures to maintain genome stability.
145 on with one strand of the plasmid origin DNA unwinding element (DUE) contribute to strand-specific re
152 the formation and progression of individual unwinding forks, we observed that both the frequency of
153 have also been shown to be important for DNA unwinding, giving rise to the steric exclusion and wrapp
154 in this work classify them into a low-force unwinding group of fimbriae together with the CFA/I and
157 found that deficiency of BLM, or another G4-unwinding helicase, the Werner syndrome-associated helic
158 dimerization, substrate orientation or flap unwinding impair the structure-specific nuclease activit
159 k biochemical assays show that Yra1 inhibits unwinding in a concentration-dependent manner by prevent
160 h fork rotation and precatenation facilitate unwinding in hard-to-replicate contexts, they intrinsica
167 In addition, we show that the probability of unwinding into each state is dependent on the applied fo
170 bination in vivo, whereas unregulated duplex unwinding is detrimental for recombination precision.
171 e of Brr2-mediated U4/U6 unwinding, but that unwinding is largely restored by a Brr2 cofactor, the C-
177 inds DNA downstream from the location of DNA unwinding, it cannot function using a conventional helic
180 that, in addition to stimulating initial DNA unwinding, Mcm10 stabilizes Cdc45 and GINS association w
181 fluorescence assays, we elucidated a unique unwinding mechanism of RNA helicase A (RHA) that entails
182 ealing how this exonuclease uses a novel DNA-unwinding mechanism to separate the polynucleotide stran
183 ments, lead us to suggest a replication fork unwinding mechanism whereby the N-terminal and AAA+ tier
187 e II (Pol II) open complex (OC) requires DNA unwinding mediated by the transcription factor TFIIH hel
190 nces that differ for G4 disruption and dsDNA unwinding, most likely arising from differences in the r
191 GCTGGTGG 3') during DNA unwinding, RecBCD's unwinding, nuclease, and RecA-loading activities change
195 A in a 'closed' preinitiation complex (PIC); unwinding of about 15 base pairs of the promoter DNA to
196 ment of alphaM4 and hypothesize that winding/unwinding of alphaM4 represents a trigger for high-affin
197 w that the expansion does not involve either unwinding of CTPR3 helices or unraveling of interactions
199 ated by the DnaA protein, which promotes the unwinding of DNA at oriC We demonstrate that the binding
201 In this study, recombinant nsP2 demonstrated unwinding of double-stranded RNA in a 5'-3' directionall
202 A prerequisite for DNA replication is the unwinding of duplex DNA catalyzed by a replicative hexam
205 kely resulting from enhanced eIF4A-dependent unwinding of G-quadruplexes in the 5' untranslated regio
207 HA may help in explaining how the repetitive unwinding of helicases contributes to their biological f
208 ned to quantitatively measure long-range DNA unwinding of individual DNA helicases from the archaeons
213 n contrast to E. coli DinG, MtDinG catalyzes unwinding of replication fork and Holliday junction stru
215 a RecQ dimer, and that continued processive unwinding of several kilobases involves multiple monomer
219 tant, PcalRG is able to induce ATP-dependent unwinding of synthetic Holliday junctions and ATP-stimul
220 to the transcription start site facilitates unwinding of the DNA duplex downstream of the transcript
222 cking of one of the template DNA strands and unwinding of the duplex prior to subsequent leading stra
224 or sequence complementarity, and (2) further unwinding of the entire protospacer to form a full R-loo
226 ric structural transition, involving partial unwinding of the helix-X between heme a and a3, thereby
227 he level of inward-open SERT and may lead to unwinding of the TM5 helix to allow phosphorylation.
232 wound using DNA oligonucleotides by coupling unwinding of U4/U6 stem II with strand invasion of stem
235 w that E1 generates strikingly heterogeneous unwinding patterns stemming from varying degrees of repe
237 th strands enter the helicase and the duplex unwinding point is internal, followed by exclusion of th
239 ave coevolved with helicases to increase the unwinding processivity even if the velocity remains unaf
240 along single-stranded DNA, and the increased unwinding processivity may contribute directly to the an
247 ngly, these mutations also increased the DNA unwinding rate, suggesting that electrostatic contacts w
248 se stimulates the helicase by increasing the unwinding rate-constant (kcat), consequently the combine
251 that the protease cleavage, RNA binding, and unwinding rates of NS3 are minimally affected in vitro.
252 monstrated the utility of the probe in a DNA unwinding reaction using a helicase from Bacillus and fo
254 ctively, these observations show that during unwinding, RecBCD binds to DNA in a dynamic mode that is
255 bination hotspot (5' GCTGGTGG 3') during DNA unwinding, RecBCD's unwinding, nuclease, and RecA-loadin
257 the course of hours whereas steps involving unwinding-rewinding of the helix proceeded over the cour
259 the velocity at which the force required for unwinding rises exponentially with increased speed) of 1
260 y active form that is capable of immediately unwinding RNA duplexes without undergoing rate-limiting
263 Interestingly, although MtRecD-catalyzed unwinding showed a markedly higher preference for duplex
265 ould have implications for understanding the unwinding specificity of pNS3h, which is active only on
267 rminal domain is shown to play a role in DNA unwinding, strand annealing, and Holliday junction (HJ)
268 atalyze strand-exchange reaction between the unwinding substrate and a homologous single-stranded DNA
271 zing this interaction accelerates RNA duplex unwinding, suggesting that it is present in solution and
272 ons as an inhibitor of Dbp2-dependent duplex unwinding, suggestive of a cycle of unwinding and inhibi
273 ggests a mechanism for DNA translocation and unwinding, suggests how the enzyme binds specifically to
275 ontributions with the excluded strand during unwinding, termed steric exclusion and wrapping (SEW).
276 helicase activity, which is responsible for unwinding the DNA while it is being transported to a rec
280 accepted 'steric exclusion' model for dsDNA unwinding, the active 3' ssDNA strand is pulled through
281 hUPF1 must bind a ssNA segments to initiate unwinding they also raise the possibility that hUPF1 has
282 on, initiating directional target DNA strand unwinding to allow segmented base-pairing with crRNA.
283 of the traditional steric exclusion model of unwinding to also include significant contributions with
285 (Cas) protein Cas9 begin with RNA-guided DNA unwinding to form an RNA-DNA hybrid and a displaced DNA
286 the existing SE model of hexameric helicase unwinding to include contributions from the excluded str
290 case that preserves chromosomal stability by unwinding unimolecular G4 DNA likely to form in transien
291 ecule experiments have demonstrated that the unwinding velocities of some helicases increase dramatic
293 e ATP hydrolysis to nucleic acid binding and unwinding via molecular mechanisms that remain poorly de
295 iochemical assays for RNA binding and duplex unwinding, we show that JFH-1 NS3 binds RNA much more ra
296 s unclear how bound proteins influence U4/U6 unwinding, which regions of the U4/U6 duplex the helicas
297 e replisome, must efficiently coordinate DNA unwinding with priming and synthesis to complete duplica
300 ere mutated and shown to generally lower DNA unwinding without negatively affecting the ATP hydrolysi
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