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1 he BCL6 promoter interacts with this distant upstream region.
2 ms (-2022C/T and -1592G/C) within the repeat upstream region.
3 x compete for a target sequence in the Epha4 upstream region.
4 reas around exons, most frequently in the 5' upstream region.
5 lement(s) within the approximately 1.4-kb 5'-upstream region.
6 ssion by isolating and characterizing its 5' upstream region.
7 rather than by regulatory elements in the 5' upstream region.
8 in mice from which we deleted this conserved upstream region.
9 ontaining a 1.5 kb fragment of the mGSTA3 5'-upstream region.
10 t-specific suppressor activity in the distal upstream region.
11 nd one sigma(28) site were found in the flgM upstream region.
12 located at position -116 within the proximal upstream region.
13 abrogated binding of OmpR:6xHis to the tviA upstream region.
14 ene and one such target site in the act gene upstream region.
15 m-a induced KRT3 expression by targeting its upstream region.
16 by binding an inverted repeat element in its upstream region.
17 ween the RepR binding sites in tcdR and repR upstream regions.
18 were also present in the Arabidopsis CBF1-3 upstream regions.
19 5'-UTRs, introns, coding exons, 3'-UTRs, and upstream regions.
20 l layers of medial entorhinal cortex and its upstream regions.
21 does not require an alignment of orthologous upstream regions.
22 in addition to inheriting activity from the upstream regions.
23 f heptad TTTTGAT repeats in their respective upstream regions.
24 lower in the transcribed regions than in the upstream regions.
25 (particularly Alu elements) present in these upstream regions.
26 cific parts of the basal promoter or further upstream regions.
27 nd RPGR (including ORF15) genes and their 5' upstream regions.
28 possible DNA bending, particularly at operon-upstream regions.
29 ring revealed 78 genes in which the promoter/upstream region (-10 kb to +0.5 kb) was recognized by ST
30 previously demonstrated that the human BEST1 upstream region -154 to +38 bp is sufficient to direct e
31 ns of DNA proximal to the ilvIH promoter, an upstream region (-260 to -190) and a downstream region (
32 n coding sequences, 37 in introns, and 12 in upstream regions; 3 of 4 rare novel coding SNPs were non
34 merase molecules at the fis promoter and the upstream region acts as a topological device regulating
35 ain a highly conserved hexanucleotide in the upstream region and a far less conserved U/GU-rich seque
37 e that integration host factor binds to this upstream region and increases in vivo expression of Pfnr
38 tions occurred within the hTERT promoter and upstream region and the fifth integration occurred in in
39 oriD; second, the PcrA is recruited to this upstream region and thirdly upon ATP-binding PcrA reloca
42 at pH 7 was able to interact with the bba66 upstream region and was specific as bba64 and ospC promo
43 hese extended 3'-end regions than within PAS-upstream regions and indeed are substantially more folde
44 num CBF1 upstream regions over the other CBF upstream regions and that CBF4 has retained the capacity
45 marks at the Peg13 and Slc38a4 DMRs, Cdkn1c upstream region, and Inpp5f_v2 DMR and paternal allele-s
46 x10 was also found to be associated with the upstream region, and its binding was required for Egr2-m
47 compared the sequence organization of their upstream regions, and examined their allelic methylation
48 ical tandem repeats (49-61 bp) in the hRFC-A upstream region are involved in regulating promoter acti
49 lthough the clustered AUUUA pentamers in the upstream region are required for stimulus sensitivity, m
51 h degrees of variability of their respective upstream regions are preferentially involved in environm
53 on near the phosphorylation site but not the upstream region around Cys(595), away from F-actin, thus
54 that encompassed the SUC2 gene promoter and upstream region but was devoid of other transcriptionall
55 on of PhyC, but frequent interruption of the upstream regions by the insertion of retroelements and o
56 rucial for basal transcription, and that two upstream regions can act as positive or negative regulat
57 ging this haplotype, located in the ZNRD1 5' upstream region, caused a loss of nuclear factor binding
58 th the pseudo-SNP allele frequency and GSTM1 upstream region CNV show population-specific patterns be
59 ences in CRT/DRE copy numbers in CAS30/CAS31 upstream regions combined with differences in gene copy
60 sequences and pools of coding and non-coding upstream regions, compare the observed symmetry levels t
63 er approach, in which a portion of the dHAND upstream region containing an enhancer that directs dHAN
64 ns a helix-turn-helix motif, while the ORF16 upstream region contains attributes of a theta-replicati
66 hat although the ATTARA sequence in the Psag upstream region contains thymine residues important for
67 ocampus receives gamma frequency inputs from upstream regions (cornu ammonis area 3 and medial entorh
68 methylated) cells in a previously unexplored upstream region, correlating with a 2.7-fold difference
69 ed histone levels increased, particularly at upstream regions, correlating with a 2-fold increase in
70 Similarly, deletion analyses of the recA upstream region defined sequences required for gene vari
72 '- and 3'-untranslated region, and immediate upstream region did not reveal the underlying mutation.
73 vivo, the ankyrin erythroid promoter and its upstream region direct position-independent, uniform exp
74 the DRR into two segments, a 376 nucleotide upstream region (DRR(-2473/-2100)) and a 147 nucleotide
76 chip data indicate that FLP/MYB88 target the upstream regions especially of cell cycle genes, includi
80 cC protects about 25 nucleotides of the P(F) upstream region from DNase I digestion, and RNA polymera
82 informative pedigrees, and sequencing SHARP1 upstream regions from normal and affected dogs will be n
83 we explored the function of the 3.7-kb Gata1 upstream region (GdC region) that harbors 3 core cis-ele
84 valuated a 5' distal weak enhancer (IGF-1 5'-upstream region growth hormone response element; 5URGHRE
86 s of the wheat PhyC gene and of some 5 kb of upstream region has demonstrated a high level of conserv
87 cumbens integrates information from multiple upstream regions has been a central question for decades
88 generator is independent of activity in the upstream regions, highlighting that CA1 can produce its
89 is a large secreted glycoprotein composed of upstream regions I-II-III, followed by the approximately
90 ments and acetylation of expressed immediate upstream regions implicates involvement of epigenetic me
93 patients had abnormal imprinting of the more upstream regions in addition to the exon 1A imprinting d
94 med in telomere reverse transcriptase (TERT) upstream regions in several cancers, associated with ele
98 pletely abolishes TCR in both the coding and upstream regions, indicating that no other TCR subpathwa
100 tity in the photosystem II protein D1 (psbA) upstream region is 59% across all taxa; similar variatio
102 in configuration of Crabp1 promoter with its upstream region is maintained, but the 6-nucleosomes spa
104 we showed that a 54-bp fragment of the G564 upstream region is sufficient for suspensor transcriptio
106 ted with a portion of the NFAT1 gene and its upstream region, leading to the repression of NFAT1 expr
107 iation in the 5' end of TGFbeta1 or a nearby upstream region modifies disease severity in cystic fibr
108 ed extended promoter regions with regulatory upstream regions more than 1,000 bp from the transcripti
109 hat the most conserved 8-mer sequence in the upstream region of 21U-RNAs, CTGTTTCA, is absolutely req
110 , BME3, had a T-DNA insertion site in the 5' upstream region of a GATA-type zinc finger transcription
111 information of multiple binding sites in the upstream region of a gene and that in the upstream regio
113 tion showed that the affinity of Lrp for the upstream region of all of these constructs was about the
114 detected in a fragment of 4,700 bp of the 5' upstream region of all self-compatible samples of the S
115 ve promoter site (amyP2), which overlaps the upstream region of amyP, were eliminated by mutagenesis
117 10(-15)), PRIC285 (P = 3.0 x 10(-10)) and an upstream region of CDKN1A (P = 2 x 10(-52)), suggesting
118 ion factor binding site (TFBS) motifs in the upstream region of coexpressed genes is therefore critic
122 deletion was detected at locus 74k in the 5' upstream region of DMBT1, and four tightly linked polymo
125 cription factors are over-represented in the upstream region of genes regulated during consolidation
127 tion to show that Fur bound, in vivo, to the upstream region of hns in a metal-dependent fashion.
128 ve promoters are localized within the 200-kb upstream region of human and mouse PEG3, which is well c
132 ealed that a 54-bp insertion mutation in the upstream region of miR-15a-16 displayed high allele freq
138 sults indicate that activator binding to the upstream region of P2 late promoters compensates in part
139 ranscription factors CREB and AP1 within the upstream region of P41 that are absent from the AAV2 cap
140 and point mutations were introduced into the upstream region of pnrfA demonstrated that an additional
141 oson-derived 24-nt RNAs target and cover the upstream region of retained genes preferentially when lo
144 nstrated that regulatory sequences in the 5' upstream region of Rpx are important for early expressio
145 bind two LIM protein-binding sites in the 5' upstream region of Rpx, which are required for Rpx promo
147 "chimeraR16-rev," in which sR16 and a small upstream region of RyR1 were replaced by RyR2 sequence.
149 nscription factor NtcA binds to sites in the upstream region of sigE and that this binding is enhance
151 conserved noncoding sequences within the 5' upstream region of STM genes in both simple and compound
152 The presence of GATA-like motifs in the upstream region of the Acl1.4 gene (encoding for ACP4) a
153 leotide substitutions have been found in the upstream region of the ankyrin gene promoter that is act
155 e show that GATA-1 binds a highly restricted upstream region of the approximately 70-kb GATA-2 domain
158 We have carried out a mutational scan of the upstream region of the bacteriophage P2 FETUD late opero
160 umber of normally methylated CpGs in the far-upstream region of the boundary is decreased about 4-fol
161 In this study, we have characterized the upstream region of the CD1D1 gene and identified a minim
166 E-box repressor motif, not present in the 5'-upstream region of the CYP3A5 gene, that attenuates CYP3
169 nctional polymorphism (-1021C-->T) in the 5' upstream region of the DBH gene that accounted for 35%-5
170 ct and specific interaction of MisR with the upstream region of the dsbD promoter was demonstrated by
171 previously that GATA-1 replaces GATA-2 at an upstream region of the GATA-2 locus, and that this GATA
172 ake up the original risk haplotype in the 5' upstream region of the gene for their effects on mRNA ab
173 cribed from the same gene locus, the 2320 bp upstream region of the gene was functionally characteriz
174 to the cis-regulatory motif structure in the upstream region of the gene, multiple trans-acting facto
175 g sites and other regulatory elements in the upstream region of the genes, as contained in the Saccha
179 he lysine-sensitive factor that binds to the upstream region of the Klebsiella pneumoniae gdhA promot
181 to bind to a CRP binding site located in the upstream region of the lsr promoter and works with the L
182 siRNA loci were specifically enriched in the upstream region of the most highly expressed genes.
183 hrough deletion analysis of a -907/+70-bp 5' upstream region of the mouse COX-2 gene, we identified a
187 asmids that incorporate up to 2.86 kb of the upstream region of the rat follistatin gene are not indu
188 We hypothesize that DsrABb binds to the upstream region of the rpoS mRNA and stimulates translat
189 an essential requirement for binding to the upstream region of the rtxA1 operon and is the key featu
190 nally orthologous nucleotide variants in the upstream region of the same gene, WntA, are responsible
195 independent chromosomal rearrangement in the upstream region of the streptolysin O (slo) gene of Stre
196 Focusing on sigma(E), we discovered that the upstream region of the T2S operon possesses both the con
197 is facilitated by reannealing of DNA in the upstream region of the transcription bubble, as is also
202 case-control study design, we show that the upstream region of TNFSF4 contains a single risk haploty
203 commonly occurring sequence motifs in the 5' upstream region of transcripts for subset of down-regula
207 ys identified NF-kappaB binding sites in the upstream regions of 75% of the genes regulated by GSK-3.
210 nscription factor binding site motifs in the upstream regions of all S. cerevisiae genes and the gene
211 tified an 18 bp inverted repeat motif in six upstream regions of all seven operons directly regulated
214 ulator MprA bound to conserved motifs in the upstream regions of both sigB and sigE in vitro and regu
215 identified as a common sequence motif in the upstream regions of calcineurin/ Crz1p-dependent genes.
216 of the cotH in Bacillus subtilis, as well as upstream regions of certain genes, such as the sucC gene
217 ay-based studies have successfully mined the upstream regions of co-expressed genes and discovered ov
219 ed transcription factor binding sites in the upstream regions of either single or grouped eukaryotic
220 rison of the CTnDOT tetQ leader regions with upstream regions of five tetQ genes found in other eleme
221 equence similarity metric operating on 10 kb upstream regions of gene pairs quantitatively predicts a
223 to identify cis-regulatory binding sites in upstream regions of genes co-regulated in embryonic stem
224 frequent occurrence of telobox motifs in the upstream regions of genes in this category, but it is no
226 sequences using the PWM and map SNPs to the upstream regions of genes; (iii) examine the evolutionar
227 ed marked variations in H3K9Ac levels at the upstream regions of HLA-DRB1 and HLA-DQB1 within the ins
228 he upstream region of a gene and that in the upstream regions of its orthologues in related genomes.
231 se I footprint analysis was performed on the upstream regions of norB and nsrR, where NsrR was shown
234 reveals that target sites are present in the upstream regions of several cardiac-expressed genes incl
236 rter strains containing gfp fusions with the upstream regions of sigB2, sigD, sigI, and sigJ did not
238 ix-His tag and documented its binding to the upstream regions of tcdR in C. difficile PaLoc and in re
239 with computer-based pattern searches of the upstream regions of the 26 other Sig1 regulon members, t
242 2 GC/GT-box elements (GC-f and GT-d) in the upstream regions of the CBS -1b promoter in CMK nuclear
243 nd transgenic mice were used to characterize upstream regions of the chicken betaB1-crystallin gene.
245 from the expanded GAA-TR in intron 1 to the upstream regions of the FXN gene, involving the FXN tran
248 ndromic sequence (5'-GGAA-N6-TTCC-3') in the upstream regions of the idhA, iolY, iolR, and iolC genes
249 fied a common sequence motif enriched in the upstream regions of the most consistently cytokinin up-r
250 5)GFI(217) anchors these potentially dynamic upstream regions of the protein to maintain protein inte
253 ucleosomes are enriched on the coding and/or upstream regions of these genes, suggesting that their i
254 for CREB were highly over-represented in the upstream regions of these genes, with 9 genes containing
259 andidate mechanism of neuroplasticity within upstream regions of this inhibitory network after chroni
260 position of endogenous Ty1 elements into the upstream regions of tRNA(Gly) genes was substantially de
262 Intriguingly, this region encompasses the upstream regions of two divergently transcribed genes an
264 constraints are placed upon the Solanum CBF1 upstream regions over the other CBF upstream regions and
265 vR bound to two extended regions of Psag, an upstream region overlapping the -35 and -10 promoter ele
266 ion and site-directed mutagenesis of the dCK upstream region (positions -464 to -27) confirmed the im
268 d spatial expression, we constructed a -5 kb upstream region rat DSP-PP promoter into the beta-galact
272 sitive sites at the TERT promoters and their upstream regions, revealing positions of potential regul
274 single allele (-13910( *)T, rs4988235) in an upstream region that acts as an enhancer to the expressi
275 and SOX10-we found several enhancers in this upstream region that contain open chromatin and direct r
277 tion to juxtaposition of HPFH enhancers, the upstream region that is absent in the beta-YAC construct
279 e structural viral Gag protein with an extra upstream region that provides a cytosolic domain and a p
280 error, rather than inherit it passively from upstream regions; that they combine multiple separate an
281 H2 (FR-H2) possessing CRT/DRE sites in their upstream regions, the most notable of which was CBF12.
282 EGF-D, in which incorporation is confined to upstream regions, the presence of exogenous H3 results i
283 box consensus sequence in the rabbit Aldh1a1 upstream region; these elements are prevalent in other h
285 d a strong candidate Fur-binding site in its upstream region, thus suggesting that omcA may be a dire
286 vity and showed the ability of GerB and GerF upstream regions to drive gfp expression in coleoptiles,
287 otide composition between coding regions and upstream regions to rank putative open reading frames ba
290 ighly conserved among the LEEs, although the upstream regions varied considerably for tir and the cru
292 is of single nucleotide polymorphisms in the upstream region was used to determine the extent of the
294 dentify regulatory sites in the murine c-myb upstream region, we looked by chromatin immunoprecipitat
297 ifs shared between the Solanum CBF1 and CBF4 upstream regions were identified, portions of which were
298 motifs, the cognate CBF binding site in its upstream region whereas MtCAS31 lacked one CRT/DRE partn
299 edicted operators in the norB, aniA and nsrR upstream regions with a K(d) of 7, 19 and 35 nM respecti
300 te gene structure of the human AGRP gene and upstream regions with differential promoter activity.
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