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1 ivator or the repressor complex binds to its upstream sequence.
2 tifs within a 50-base pair region of the GDH upstream sequence.
3 II) within approximately 12 kb of the CYP3A4 upstream sequence.
4 d by a negative regulatory element in its 5' upstream sequence.
5 one linear plasmid, which was defined by the upstream sequence.
6 al activity that lies between the -490/-72bp upstream sequence.
7 associated with a number of A-tracts in the upstream sequence.
8 r control elements detected in 3.6 kb of the upstream sequence.
9 zation efficiency is negatively regulated by upstream sequence.
10 induction was controlled by 335 bp of CTLA-4 upstream sequence.
11 and activity increased 5-fold with 300 bp of upstream sequence.
12 h was proportional to the copy number of the upstream sequence.
13 increased or decreased with mutations in the upstream sequence.
14 e locus of 10 kb containing 5.6 kb of the 5' upstream sequence.
15 by varying amounts (0.4, 1.5, and 8.5 kb) of upstream sequence.
16 ls for the discovery of regulatory motifs in upstream sequences.
17 activity was due to fusion of the domain to upstream sequences.
18 virus often retained the PPT and additional upstream sequences.
19 scription, insect systems require additional upstream sequences.
20 ein-DNA interaction were identified in CyIIa upstream sequences.
21 ix dependence of the position of cre2 and/or upstream sequences.
22 54 bp, and full activity requires additional upstream sequences.
23 ut acts as an attenuator in combination with upstream sequences.
24 egregate in the population with two distinct upstream sequences.
25 egregate in the population with two distinct upstream sequences.
26 higher than that of the ribozyme without the upstream sequences.
27 iption factors through the analysis of their upstream sequences.
28 an directly bind to specific PMEPA1 promoter upstream sequences.
29 RNA promoters, which often contain A+T-rich upstream sequences.
32 us contained six DHS within 7.0 kb of the 5' upstream sequence (-7.0 kb) and two DHS in intron 2.
35 ences reveals highly conserved omp3 and omp2 upstream sequences across species, suggesting a unified
37 Z construct, which has 1.5 kilobase pairs of upstream sequences along with the promoter and first int
39 DCTN1 along with characterization of the 5' upstream sequence and alternative splice variants previo
40 ure, possibly reflecting misfolding with the upstream sequence and dynamics intrinsic to the ribozyme
42 be recapitulated with as little as 568 bp of upstream sequence and intragenic sequence containing the
44 All constructs containing at least 192 bp of upstream sequence and the 5'UTR conferred tissue-specifi
45 ays indicated that the combination of the 5' upstream sequence and the first intron supported the hig
46 frameshifting is influenced by the flanking upstream sequence and the nucleotides in the spacer elem
47 ntify a number of pseudogenes with conserved upstream sequences and activity, hinting at potential re
48 receptor (TCR) responsiveness requires both upstream sequences and an intronic region, PRRIV, previo
50 demonstrated that the U-tail interacts with upstream sequences and may play roles in both stabilizat
51 noncanonical poly(A) signals contain A-rich upstream sequences and tend to have a higher frequency o
52 , with identical distances between conserved upstream sequences and the downstream -10 elements and t
53 have demonstrated previously that the 9.0 kb upstream sequences and the first intron residing in the
54 rocess, cis-acting ribozymes cleave adjacent upstream sequences and thereby resolve replication inter
55 steps), automatically constructs orthologous upstream sequences, and provides automated benchmarks fo
59 olar macrophages, confirming that additional upstream sequences are required for expression in macrop
60 that 126 base pairs (bp) of the VIP receptor upstream sequences are sufficient to mediate transcripti
63 ive transcription within BCL6 as well as far upstream sequences at nucleosomal resolution in B-cell l
64 iated protein, H-NS, preferentially binds to upstream sequences at the nir promoter and represses pro
65 e activity of this promoter was repressed by upstream sequences between -0.9 and -2.5 kb in cells tha
67 ntaining the sarA transcript plus additional upstream sequence but not the sarA transcript alone.
69 tionality of intron 1 sequence in context of upstream sequences by using transient transfection assay
70 ilies that are flanked by a highly conserved upstream sequence called the upstream homology box, or U
71 d the results argue that transcription of an upstream sequence can alter the termination response of
73 the B-Peru gene with the first 710 bases of upstream sequence conferred the same levels of aleurone
74 also reveal that the 3' strand of ISTL1 and upstream sequences constitute an inhibitory region that
77 ection assays, we show that 4.0 kb of the 5' upstream sequences contains sufficient genetic informati
79 ng domain of the F protein together with its upstream sequence could significantly destabilize the gr
81 her proteins that bind to flanking conserved upstream sequences (CUS: S, X, X2, and Y boxes) to these
84 for IFN-inducibility, as well as an adjacent upstream sequence, designated kinase conserved sequence-
92 d two binding sites for PrrA within the hemA upstream sequences, each of which contains an identical
93 major promoters P1 and P2 as well as the far upstream sequence element (FUSE) and CT elements, which
94 NA polymerase II and consists of a bipartite upstream sequence element (USE) and an element close to
95 ment gene is unusual in that it possesses an upstream sequence element (USE) required for full activi
96 genes requires a TATA box in addition to an upstream sequence element (USE), and polymerase specific
97 nds specifically to the SL RNA gene promoter upstream sequence element and is absolutely essential fo
98 are flanked at their 5' ends by a conserved upstream sequence element called the upstream homology b
101 L1A2, and COL2A1, and demonstrate that these upstream sequence elements (USEs) influence polyadenylat
102 the marked TNF-alpha genes demonstrated that upstream sequence elements such as NF-kappaB are not req
103 oes not cater for the incorporation of large upstream sequences essential for regulated tissue-specif
105 genome-wide set of expression ratios and the upstream sequence for each gene, and outputs statistical
110 e show that the proximal 5.2 kilobases of 5'-upstream sequence from the K6a gene fails to direct sust
111 oter revealed protection of the TATA box and upstream sequences from -38 to -20 (top strand) and -40
114 We show that as few as 154 base pairs of 5'-upstream sequences from the cap site can direct the kera
115 rts long-term expression by fusing 6.3 kb of upstream sequences from the rat tyrosine hydroxylase (TH
123 abolished transcriptional activity, but the upstream sequence had no effect on TXAS promoter activit
125 is unusually G+C rich (75% G+C in 1200 bp of upstream sequence), has 17 putative SP1 transcription fa
129 expression assays demonstrate that 2.2 kb of upstream sequence in either species is sufficient to dri
130 onstructs containing nested deletions of the upstream sequence in the human RPE cell lines ARPE19 and
131 ation of the Bax promoter involves a complex upstream sequence in which two Brn-3a response elements
134 r necessarily consists of a TATA element and upstream sequences in order to specify the direction of
135 nteract with proteins that bind to conserved upstream sequences in promoters of class II major histoc
136 box) is the 5'-most element of the conserved upstream sequences in promoters of major histocompatibil
138 by HSF-1 overexpression, and HSF-1 binds to upstream sequences in the regions -1080/-845, -533/-196,
139 ked by inclusion of another PNA, targeted to upstream sequences in the U5 region of the viral RNA.
140 PT-1 substrate, raising the possibility that upstream sequences in this protein may play a role in it
145 e response of one isolate with a distinctive upstream sequence including a variant regulatory-motif p
146 The most active segment contained a 177-bp upstream sequence including apparent Crx and Nrl transcr
147 Insertion in pGL3 of a 1635 bp segment of upstream sequence including the most upstream exon (B1c)
148 its transcriptional regulation, we replaced upstream sequences including a DNase I hypersensitive (H
149 binding, and truncation studies suggest that upstream sequences including FRB are required for kinase
151 ntained with several further deletions of 5'-upstream sequence, including a short 59-base pair fragme
152 d, measured haplotype analyses that excluded upstream sequences, including the ACE promoter, from har
154 e that repression is due to gp33 blocking an upstream sequence-independent DNA-binding site on RNAP (
155 MP-4 promoters and report substantially more upstream sequence information than that which has been p
156 n constructs containing -14.5 and -0.6 kb of upstream sequence into beta3-AR gene knockout mice.
157 serine or threonine, were examined, and the upstream sequences involved in the developmental regulat
158 ntaining approximately 1.7 kilobase pairs of upstream sequence is required for induction of promoter
159 omoter indicates that as little as 212 bp of upstream sequence is sufficient for this expression, alt
161 everal distinct and repeated motifs in their upstream sequences is examined here using publicly avail
163 w that a clone containing Myf5 and 140 kb of upstream sequences is sufficient to recapitulate the kno
167 construct containing 2473 base pairs of hINV upstream sequence linked to luciferase, with POU homeodo
168 e its expression in vivo and that additional upstream sequences located between -0.7 and -2.7 kb are
170 ufficient for this expression, although more upstream sequence may be involved in quantitative regula
172 Although 21U-RNA loci share a conserved upstream sequence motif, the mature 21U-RNAs are not con
173 orter construct containing 285 base pairs of upstream sequence nearly abolished promoter activity, an
174 g studies focusing on the coding regions and upstream sequence of 152 candidate genes in a total of 1
177 a lacZ reporter construct, containing 3.8 kb upstream sequence of Dlx2, led to the mapping of regulat
178 These results indicate that the 49-residue upstream sequence of F1 binds in an inhibitory mode to N
179 e located between -960 and -550 bp in the 5'-upstream sequence of K6a and that their activity is infl
180 this study, promoter analyses show that the upstream sequence of POTH1 drives beta-glucuronidase act
181 enesis in tandem TTGAC motifs located in the upstream sequence of StSP6A suppressed the short day-ind
183 A promoter containing 2133 base pairs of upstream sequence of the 5'-flanking region of mVGLUT2 c
187 lucuronidase (GUS) gene fused to a 3.2 kb 5' upstream sequence of the gene encoding the pea FTase bet
188 ultiple GATC binding sites for Dam within an upstream sequence of the gidA gene and one such target s
190 y from the coding region to the LCR with the upstream sequence of the human LW gene, a distance of >3
191 myces cerevisiae) one-hybrid screen with the upstream sequence of the KNOX gene Oskn2 from rice (Oryz
195 n profiling identify hypo-methylation within upstream sequences of 6 genes and hyper-methylation of 1
196 y protein (PpsR, FNR, IHF) binding motifs in upstream sequences of a number of photosynthesis genes h
199 The Sp-1 binding site is conserved in 5' upstream sequences of both the mouse and the human genes
200 Unique to 2HAPI is the ability to retrieve upstream sequences of co-regulated genes for promoter an
205 consisting of miRNA-target pair information, upstream sequences of miRNAs, transcriptional regulatory
206 ish flk1 endothelial enhancer, as well as in upstream sequences of mouse flk1 and human kdr genes, su
207 ve transcription factor binding sites in the upstream sequences of similarly expressed genes has rece
210 rogen receptor binding to predicted promoter upstream sequences of the PMEPA1 gene was confirmed by c
211 romoter activity of the 5.6- or 9.0-kilobase upstream sequences of the rat TH gene, which had been sh
212 ed by genomic fusion events between promoter upstream sequences of the TMPRSS2 and coding sequences o
214 o the separate genes in humans, however, the upstream sequences of the two howler genes show homology
215 nic plants containing the 1.1- and 1.0-kb 5' upstream sequences of the two MCCase subunit genes, resp
221 Hybridization analyses revealed that the upstream sequence originally identified 5' of the full-l
223 pression of GA1 cDNA driven by the 2.4 kb 5'-upstream sequence plus the GA1 genomic coding region int
231 ht ventricular expression to the human dHAND upstream sequence revealed two conserved consensus sites
232 basal P1-rr promoter fragment but different upstream sequences revealed no detectable silencing effe
234 ter constructs driven by either 9 or 1 kb of upstream sequence selectively transcribe the transgene i
236 urther extensive mutagenesis of the beta-PDE upstream sequences showed no additional regulatory eleme
237 omparisons with other vertebrate rhodopsin 5 upstream sequences showed significant nucleotide homolog
240 to ORF K12 itself, more frequently encompass upstream sequences spanning two sets of 23-nucleotide GC
241 hat mediates functional interactions between upstream sequence-specific activators and the general tr
243 contrast, the proximal 960 base pairs of 5'-upstream sequence suffice to mediate an induction of bet
245 ately -6 kilobase pairs to -59 base pairs of upstream sequences, terminating at nucleotide +47), iden
247 d region of the first exon and the immediate upstream sequence that confers transcriptional activatio
248 f the C/EBPbeta promoter containing a 541-bp upstream sequence that could account for this effect.
249 yces cerevisiae U6 RNA gene, SNR6, possesses upstream sequences that allow productive binding in vitr
253 tive to ribozyme precursor without the extra upstream sequences, the kinetic profile for self-cleavag
254 ingle base substitutions in the nir promoter upstream sequences: these deletions and substitutions pr
256 (A) site requires only the DSE and an A-rich upstream sequence to direct efficient cleavage and polya
257 iardia with DNA constructs that used the GDH upstream sequence to drive the expression of a luciferas
258 3 or C2C12 cells required only 165 bp of the upstream sequence to warrant detailed examination of its
260 n of genomic RNA, which can also anneal with upstream sequences to stabilize alternative conformation
261 ist of a TATA box and a purine-rich adjacent upstream sequence (transcription factor B (TFB)-responsi
262 length bacterial promoter, encompassing both upstream sequences (UP-elements) and core promoter modul
264 were derived that are missing nef, vpr, and upstream sequences (US) in the U3 region of the LTR (SIV
269 additional approximately 200 nucleotides of upstream sequence was required for induced levels of act
271 ary to the HBV polyadenylation signal and 5'-upstream sequences was complexed to a targetable DNA car
272 d a genomic clone containing 4876-nucleotide upstream sequences was found to have promoter activity i
273 similarity between CyIIa and CyI (and CyIIb) upstream sequences was limited and included a consensus
275 hich has an additional 7.7 kilobase pairs of upstream sequences, was expressed in the ventricle and o
277 at -59 to -50 and its adjacent 20-base pair upstream sequence were demonstrated to play a critical r
282 ites of protein-DNA interaction in the CyIIa upstream sequences were identified by DNase I footprinti
283 nse occurred even when the btuB promoter and upstream sequences were replaced by the heterologous bla
284 tion in transfection assays, but intron 1 or upstream sequences were required for expression in the v
286 virus 35S promoter containing the -92 to +6 upstream sequence, whereas oligomers of Gap boxes or AE
287 n binding site previously located in the CyI upstream sequences, whereas the others appear to be uniq
288 functionally relevant proteins to conserved upstream sequences which regulate class II transcription
289 nal in vivo data indicated that further nepA upstream sequences, which are likely to bind a potential
290 The availability of the human beta-PDE 5' upstream sequence will allow patients with retinal degen
291 promoter elements and genetic markers in the upstream sequence will enable the screening of patients
292 Nase footprinting analysis of 1.6 kbp of the upstream sequence with nuclear extracts from human lung
294 L5, 92% contained tandem TTGAC motifs in the upstream sequence within 3 kb of the transcription start
295 of the mu S poly(A) site, we have found that upstream sequences within the Cmu gene, specifically the
296 transcription of an RP gene it must bind to upstream sequences; yet for Rap1p to repress the transcr
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