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1 ious results that demonstrated inhibition by uracil.
2 responsible for the proton-driven uptake of uracil.
3 ansformants that grow on agar plates lacking uracil.
4 e to produce adenine, guanine, cytosine, and uracil.
5 cluding Drosophila, are incapable of binding uracil.
6 in incomplete conversion of intermediates to uracil.
7 otic acid to form (1-beta-D-erythrofuranosyl)uracil.
8 and one molecule of 5-amino-6-(ribitylamino)uracil.
9 superfamily are essential for the removal of uracil.
10 Hypoxanthine was a weaker inhibitor than uracil.
11 elity by catalyzing the removal of mutagenic uracils.
12 hich converts cytosines in switch regions to uracils.
13 ingle base mismatches flanked by adenines or uracils.
14 DMF (100 degrees C, 2 h) to yield 5-arylated uracils.
15 old, on enzymatic removal of these quenching uracils.
16 here hUNG acts iteratively on densely spaced uracils.
17 (Vif) by deaminating viral cDNA cytosines to uracils.
18 infected individuals also contained abundant uracils.
22 are hypersensitive to high concentrations of uracil, 5-fluorouracil, and 4-thiouracil in the growth m
23 gnated as Endonulcease Q (EndoQ), recognizes uracil, abasic site and xanthine, as well as hypoxanthin
24 nucleosides did not affect maternal hepatic uracil accumulation in DNA but did affect plasma folate
25 obulin (Igh) gene deamination as measured by uracil accumulation occurs primarily in early G1 after c
26 howed that SMUG1 efficiently prevent genomic uracil accumulation, even in the presence of UNG, and id
27 e et al. (2015) reveal how pathogen-secreted uracil acts at two steps to induce ROS via the Hedgehog
29 vation that LdUPRT is substrate-inhibited by uracil and 4-thiouracil, but 5-fluorouracil toxicity tra
30 the impact of SMUG1 deficiency, we measured uracil and 5-hydroxymethyluracil, another SMUG1 substrat
31 and -7-deazaguanine as well as 5-substituted uracil and cytosine 2'-deoxyribonucleosides and mono- an
33 , combined treatment of 5-fluoro-1-propargyl-uracil and Pd(0)-functionalized resins exhibits comparab
34 of 20 and 99 muM for the natural substrates uracil and phosphoribosylpyrophosphate, respectively, as
35 We have measured the repair of site-specific uracil and single nucleotide gaps along the surface of t
37 e for pyrimidine nucleotides are funneled to uracil and then phosphoribosylated to UMP in the parasit
38 egradation was observed at the hydroxymethyl uracil and tricyclic guanidine groups; uracil moiety cle
39 rocesses non-helix distorting lesions (e.g., uracils and gaps) and is composed of two subpathways tha
40 ncrease of the choline derivative compounds, uracil, and free amino acids, and a large decrease of ta
42 Its role is to bind to DNA, locate unwanted uracil, and remove it using a base flipping mechanism.
43 Simulations were performed in the absence of uracil, and resulted in a closed state of the transporte
51 ines (fluorouracil, capecitabine, or tegafur-uracil as single agents, in combination with other antic
52 on the post-transcriptional modification of uracil at position 8 (U8) of tRNAs by the 4-thiouridine
54 ccine strains, such as type I nonreplicating uracil auxotroph mutants, are highly effective in elicit
55 ssed using cps, an avirulent, nonreplicating uracil auxotroph strain of the parasite Toxoplasma gondi
57 onreverting, nonreplicating, live attenuated uracil auxotroph vaccine strains in the type II Deltaku8
66 ed, contrary to current ideas, that cellular uracil base excision repair (UBER) enzymes target and cl
67 lated viral DNA products are degraded by the uracil base excision repair (UBER) machinery with less t
71 is an exemplar that efficiently locates rare uracil bases in both double-stranded DNA and single-stra
73 Here, we describe new 1-(omega-phenoxyalkyl)uracils bearing acetanilide fragment in 3 position of py
74 id, arginine, N1-acetylspermidine, xanthine, uracil, betaine, symmetric dimethylarginine, and asymmet
76 thase inhibitor (raltitrexed), which induces uracil but not 5-FU accumulation, thus indicating that g
77 guanine over adenine, cytosine, thymine and uracil, but this selectivity is extraordinarily amplifie
78 initiated through deamination of cytidine to uracil by activation-induced cytidine deaminase (AID).
79 proposed that Pol D is able to interact with uracil by looping out the single-stranded template, allo
80 o not significantly contribute to removal of uracils by uracil DNA glycosylase regardless of the tran
82 the initial and rate-limiting enzyme of the uracil catabolic pathway, being critically important for
83 sed wing blister formation, while removal of uracil catabolism alleles was synthetic lethal with eogt
85 convert cytosines in single-stranded DNA to uracils, causing base substitutions and strand breaks.
86 s expressing AID at high levels have genomic uracils comparable to those seen with stimulated UNG(-/-
87 from an iodide anion within a binary iodide-uracil complex using a UV pump pulse; the ensuing dynami
89 f-assembly and self-organization behavior of uracil-conjugated enantiopure (R)- or (S)-1,1'-binaphthy
90 cient enzyme that can remove uracil from any uracil-containing base pairs including the A/U base pair
93 AR9 is a giant Bacillus subtilis phage whose uracil-containing double-stranded DNA genome encodes dis
95 D4 binds weakly to nonspecific DNA and to uracil-containing substrates but binds abasic sites with
96 sured, including plasma nucleosides, hepatic uracil content, maternal plasma folate concentrations, a
97 east and discovered significant variation in uracil content, wherein uracil is excluded from the earl
100 han are removed from the genome but that the uracil creation/excision balance is restored during esta
101 antiport mechanism and SLC25A36 cytosine and uracil (deoxy)nucleoside mono-, di-, and triphosphates b
102 ormation of unsymmetrical N,N'-disubstituted uracil derivatives can occur, the methodology demonstrat
103 t active compounds were the N(3)-substituted uracil derivatives containing 6-(4-bromophenoxy)hexyl or
105 st elucidation of the structural features of uracil derivatives that are critical for AC inhibition a
106 A short and efficient one-pot synthesis of uracil derivatives with a high structural variability is
108 from Thermus thermophilus HB8 is not only a uracil DNA glycosyase acting on G/U, T/U, C/U, and A/U b
109 ate backbone in sliding and hopping by human uracil DNA glycosylase (hUNG), which is an exemplar that
110 genic cell line that had no detectable human uracil DNA glycosylase (hUNG2) activity, establishing th
111 measured the probability that nuclear human uracil DNA glycosylase (hUNG2) excised two uracil lesion
117 g uracil-guanine mismatches are processed by uracil DNA glycosylase (UNG)-mediated base-excision repa
118 nteractions with base excision repair enzyme uracil DNA glycosylase (UNG2) and crossover junction end
121 imilar to the recruitment of another target, uracil DNA glycosylase (UNG2), to the CRL4-DCAF1 E3 by V
122 time quantitative PCRs (qPCRs) targeting the uracil DNA glycosylase gene (udg) or the 23S rRNA gene a
124 ficantly contribute to removal of uracils by uracil DNA glycosylase regardless of the translational o
127 ties of two model enzymes, exonuclease I and uracil DNA glycosylase with high sensitivity and selecti
133 The present biosensor is able to detect both uracil DNA N-glycosylase (UNG) and AP-endonuclease 1 (AP
137 -induced cytidine deaminase are processed by uracil-DNA glycosylase (UNG) and mismatch repair (MMR) p
138 e excision repair (BER), either initiated by uracil-DNA glycosylase (UNG) or by single-strand selecti
139 Complementary pathways, initiated by the uracil-DNA glycosylase (UNG) or the mismatch repair fact
142 us, and the VACV D4 protein serves both as a uracil-DNA glycosylase and as an essential component req
143 ion for abasic site recognition, the rate of uracil-DNA glycosylase hydrolysis of the N-glycosidic bo
147 il residues are removed from DNA by specific uracil-DNA glycosylases in the base excision repair path
148 nockdown of SMUG1 or thymine-DNA glycosylase uracil-DNA glycosylases, proving that it is base excisio
149 moieties of Poly A nanocapsules and thymine/uracil does not affect the fluorescence of poly A nanoca
151 tidine deaminases, which convert cytosine to uracil during RNA editing and retrovirus or retrotranspo
152 ycosylase/APE1 removes an outwardly oriented uracil efficiently; however, polymerase beta activity is
154 een with peripheral B cells and have nuclear uracil excision activity comparable to that seen with st
156 f-life of UNG2, reduces the rate of in vitro uracil excision, and slows UNG2 dissociation from chroma
157 minases in yeast where it largely depends on uracil excision, which generates an abasic site for stra
158 o prevent this from happening in most cases, uracil exhibits an ultrafast relaxation mechanism from t
159 suggests that the C4-alkoxide (enol form of uracil) facilitates coupling by participation in the int
162 n extremely efficient enzyme that can remove uracil from any uracil-containing base pairs including t
163 n in MUG not only accelerates the removal of uracil from mismatched base pairs but also enables the e
165 in alcohol-fed mice and decreased cytidine, uracil, fumarate, creatine phosphate, creatine, and chol
168 he preferential access of mismatch repair or uracil glycosylase (UNG) to AID-initiated U:G mismatches
170 and third-generation base editors that fuse uracil glycosylase inhibitor, and that use a Cas9 nickas
171 ults demonstrate that Pms2/Mlh1 and multiple uracil glycosylases act jointly, each one with a distinc
172 ations at A-T bases depend on two additional uracil glycosylases, thymine-DNA glycosylase and SMUG1.
175 ted enriched MTHFD1 in the nucleus, elevated uracil in DNA, lower rates of de novo dTMP synthesis, an
176 We applied the Excision-seq method to map uracil in E. coli and budding yeast and discovered signi
177 vidence for a direct transcription arrest by uracil in either of the two settings because the vectors
178 best known for deaminating cytosine bases to uracil in single-stranded DNA, with characteristic seque
179 bases and stall replication on encountering uracil in template strands, four bases ahead of the prim
180 late synthase and causes the accumulation of uracil in the genome, whereas FdUTP is incorporated by D
181 ould cooperate with MMR by excising a second uracil in the vicinity of the U:G mismatch, but it faile
184 ed deaminase (AID) converts DNA cytosines to uracils in immunoglobulin genes, creating antibody diver
186 n enhanced local search mode when it acts on uracils in ssDNA, and also, in a context where uracils a
189 y 5 UDGb can also act as an enzyme to remove uracil incorporated into DNA through the existence of dU
190 e pairs allows the MUG-K68N mutant to remove uracil incorporated into the genome during DNA replicati
191 ication forks and the deleterious effects of uracil incorporation into DNA from thymidine-deficient n
192 integrity by preventing misincorporation of uracil into DNA, which results in DNA toxicity and cell
193 hypermutation (SHM) of immunoglobulin genes, uracils introduced by activation-induced cytidine deamin
194 l D appears to interact with template strand uracil irrespective of its distance ahead of the replica
196 ificant variation in uracil content, wherein uracil is excluded from the earliest and latest replicat
197 and an intermediate for antibody maturation, uracil is primarily processed by base excision repair (B
200 , suggesting that APOBEC3B-catalyzed genomic uracil lesions are further processed by downstream DNA "
201 analyses is that APOBEC3B-catalyzed genomic uracil lesions are responsible for a large proportion of
203 n uracil DNA glycosylase (hUNG2) excised two uracil lesions spaced 10-80 bp apart in a single encount
204 thesis in a dose-dependent manner, increased uracil levels in nuclear DNA, and increased genome insta
208 (-/-) mice showed a synergistic increase in uracil levels with up to 25-fold higher uracil levels th
209 naling perturbations that increase cytosolic uracil levels, thereby causing wing blister formation.
215 rget of arsenic trioxide (As2O3), leading to uracil misincorporation into DNA and genome instability.
218 ethyl uracil and tricyclic guanidine groups; uracil moiety cleavage/fragmentation and further ring-op
220 DA heterozygotes (AID+/-), and patients with uracil N-glycosylase (UNG) deficiency, which impairs CSR
226 s of 5-(2-furyl, or 2-thienyl, or 2-pyrrolyl)uracil nucleosides, which are used as important RNA and
228 eceptor characterized by some as a dualistic uracil nucleotide/cysteinyl leukotriene receptor and by
232 The expression constructs contained a single uracil opposite an adenine (to mimic dUTP misincorporati
233 ear isoform of UNG, catalyzes the removal of uracil or 5-fluorouracil lesions that accumulate in DNA
235 ) stress, a defect in the trafficking of the uracil permease, alpha-syn accumulation and foci, and a
236 n-regulation during necrotrophy, whereas the uracil phosphoribosyl transferase gene involved in pyrim
238 netic analysis has authenticated L. donovani uracil phosphoribosyltransferase (LdUPRT), an enzyme not
241 iouracil (TU) in cells expressing transgenic uracil phosphoribosyltransferase (UPRT), a method known
242 TK(SR39) mutants), yeast cytosine deaminase:uracil phosphoribosyltransferase (yCD:UPRT) and nitrored
248 brational spectroscopy of the dehydrogenated uracil radical is obtained by a dipole-bound state with
250 s not stop at a defined location relative to uracil, rather a general decrease in DNA synthesis is ob
252 d in an Escherichia coli strain defective in uracil repair (ung mutant), and the mutations that accum
253 electrochemical sensing of 8-oxoguanine and uracil repair glycosylase activity within DNA monolayers
255 lternatively, in certain archaeal organisms, uracil residues are eliminated by apurinic/apyrimidinic
258 he ability to synthesize the 5-amino-ribityl-uracil riboflavin precursor and to activate polyclonal a
259 ne tract and closely associated Cytosine and Uracil-rich (CU-rich) sequences, upstream of the mini-ex
260 ds a subpopulation of mRNAs characterized by uracil-rich 3'-untranslated regions under normoxic condi
261 Higher expression in NGS was discovered for uracil-rich miRNAs (p = 7 x 10(-37)), while high express
262 During hypoxia, UBP1C association with non-uracil-rich mRNAs is enhanced concomitant with its aggre
264 natural hosts, expresses seven small nuclear uracil-rich non-coding RNAs (called HSURs) in latently i
265 N-propargylation of the N3 position of its uracil ring resulted in a vast reduction of its biologic
266 of Cid1 that provides detailed evidence for uracil selection via the dynamic flipping of a single hi
269 sulting path reveals an extensive network of uracil-specific interactions spanning the first 12 nucle
270 ully integrated proviruses lacked detectable uracil, suggesting that only nonuracilated viral DNA pro
273 isons of base-pair steps with thymine versus uracil, the thymine methyl group tends to enhance the st
274 Unmethylated cytosines may be converted to uracil through the addition of sodium bisulphite, allowi
275 ycosylase (TDG) excises the mismatched base, uracil, thymine or 5-hydroxymethyluracil (5hmU), as well
276 ameters demonstrate that SLC25A33 transports uracil, thymine, and cytosine (deoxy)nucleoside di- and
277 idine deaminase (AID) converts cytosine into uracil to initiate somatic hypermutation (SHM) and class
280 und that these cells express a high-affinity uracil transporter (designated TbU3) that is clearly dis
281 ture with a substrate-bound structure of the uracil transporter UraA in an inward-facing conformation
282 ate domain, similar to the previously solved uracil transporter UraA, which belongs to the same famil
283 l importance is a bifurcation point at which uracil triphosphate is partitioned towards either nucleo
285 se APOBEC3F (A3F) deaminates cytosine (C) to uracil (U) and is a known restriction factor of HIV-1.
286 esis of C-4'-spiro-oxetanoribonucleosides of uracil (U) and thymine (T) in 37 and 45% overall yields,
288 aneous hydrolytic deamination of cytosine to uracil (U) in DNA is a constant source of genome instabi
291 ffect of three thymine (T) analogs including uracil (U), 5-fluorouracil (5FU) and 5-hydroxymethylurac
293 C) and conversion of the newly formed 5fC to uracil (under bisulfite conditions) means that 5hmC can
295 eals that although hydrogen bonding to O2 of uracil underlies the UDG activity in a dissociative fash
298 terize its ability to convert cytosines into uracils, we tested several derivatives of APOBEC3B gene
299 alous X-ray diffraction label (5-selenophene uracil), which enables the correlation of RNA conformati
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