1 ionally predict RBP binding sites across the
whole genome.
2 ies now generate ROIs distributed across the
whole genome.
3 applying a machine learning technique to SP
whole genomes.
4 edict hydroxymethylation in silico with high
whole-genome accuracy, paving the way for large-scale re
5 elines, wgMLST approaches, k-mer algorithms,
whole genome alignment and others; each of these has adv
6 ation tract length of Bacillus cereus from a
whole genome alignment.
7 One way to overcome this is to do
whole-genome amplification (WGA) in clinical samples, bu
8 However, current
whole-genome amplification (WGA) methods are limited by
9 to artifacts associated with cell lysis and
whole-genome amplification.
10 Through
whole genome analysis of 257 individuals, we demonstrate
11 s limited by the sequence read length during
whole-genome analysis.
12 Here we have developed a new
whole-genome analytic pipeline to optimize ChIP-Seq prot
13 Whole genome and exome sequencing usually include reads
14 We use information from
whole genome and targeted bisulfite sequencing from 910
15 Here we test this model using
whole genome and transcriptome resequencing data in the
16 human tissues by using combined analyses of
whole genomes and multi-tissue RNA-sequencing data from
17 prediction and synteny visualization across
whole genomes are valuable methods for detecting and rep
18 tion biopsy (FNAB) for DNA amplification and
whole genome array-based assay were performed for analys
19 sy (FNAB) of tumor for DNA amplification and
whole genome array-based assay.
20 d clustering algorithm, our approach turns a
whole genome assembly problem into a set of independent
21 opulations, considered to be identical given
whole-genome average nucleotide identity of >99.9%, colo
22 that also included the random effects of the
whole genome background.
23 ly [Formula: see text]3 min to process a 30x
whole-genome BAM file on a desktop computer.
24 The alternative is to use
whole genome bisulfite (WGB) sequencing but this approac
25 ing and memory process in A. mellifera using
whole genome bisulfite sequencing (WGBS) method.
26 Although
Whole genome Bisulfite Sequencing provides high-quality
27 we derive epigenetic energy landscapes from
whole-genome bisulfite sequencing (WGBS) data that enabl
28 ifferentially methylated regions (DMRs) from
whole-genome bisulfite sequencing (WGBS).
29 ation haplotype blocks, after analysis of 61
whole-genome bisulfite sequencing data sets and validati
30 thylation status and DNA polymorphisms, from
whole-genome bisulfite sequencing data, and nucleosome o
31 We used
whole-genome bisulfite sequencing in a mouse model with
32 Whole-genome bisulfite sequencing of antigen-specific mu
33 methylation to leukemogenesis, we performed
whole-genome bisulfite sequencing of primary leukemic an
34 Whole-genome bisulfite sequencing was conducted to asses
35 Through
whole-genome bisulfite sequencing, we showed that DNA me
36 Here, we performed
whole-genome bisulfite sequencing, which is a comprehens
37 ist Genome Reference Panel (AGRP), the first
whole-genome catalogue of variants and phased haplotypes
38 nery regulated by C/EBPepsilon, we performed
whole-genome ChIP-Seq using mouse bone marrow cells.
39 ted as novel ASD risk genes when integrating
whole-genome CNVs and whole-exome sequencing data.
40 Whole-genome comparison of pretreatment and relapse isol
41 polymorphism (SNP) genotyping and then with
whole-genome data and show how an understanding of evolu
42 also construct de novo linkage maps on 7-12x
whole-genome data on the Red postman butterfly (Heliconi
43 Here we exploit representative
whole-genome data sets from six diverse bacterial specie
44 ascertainment of data-driven biomarkers from
whole-genome data.
45 enced controls and from all public exome and
whole genome databases, including the 1000 Genomes datab
46 y three different simulation designs and one
whole genome dataset.
47 the syntenic portion of the genome using two
whole-genome de novo assemblies of the inbred lines B73
48 Our results illustrate the power of
whole-genome de novo sequencing relative to resequencing
49 e and executive function deficits as well as
whole-genome DNA and promoter-specific hypomethylation i
50 We report the first
whole-genome DNA methylation datasets from single pig bl
51 Our aim was to characterize the
whole-genome DNA methylation landscape in human pancreat
52 ies of TP53 mutation (3 of 20 tumors [15%]),
whole genome duplication (5 of 20 tumors [25%]), and 3p
53 Gene loss following
whole genome duplication (WGD) is often biased, with one
54 f duplicate genes (ohnologues) retained from
whole genome duplication (WGD) is thought to promote evo
55 generally holds for duplicates generated by
whole genome duplication (WGD) or by small-scale duplica
56 No recent
whole genome duplication events are observed in spinach.
57 Whole genome duplication is considered to be a significa
58 collinearity show that jute underwent shared
whole-genome duplication approximately 18.66 million yea
59 e Asterids II clade and a sunflower-specific
whole-genome duplication around 29 million years ago.
60 loss events between individuals following a
whole-genome duplication event.
61 ost paralogs originating from the Salicaceae
whole-genome duplication had diverged expression, with t
62 ation shared by core eudicots but no further
whole-genome duplication in the last approximately 125 m
63 Analyses of paralogous genes suggest a
whole-genome duplication shared with olive (Olea europae
64 ring time has been shaped by the most recent
whole-genome duplication, which suggests that ancient pa
65 latory landscape following hybridization and
whole-genome duplication.
66 h flowering plants and animals was driven by
whole-genome duplications followed by nonrandom gene los
67 und that paralogues from the two most recent
whole-genome duplications had virtually identical locali
68 Thus, while
whole-genome duplications have driven the expansion and
69 eased oxidative stress and robust changes in
whole genome expression in previously healthy neurons.
70 in-induced depression were uncovered through
whole-genome expression analysis.
71 nd onset of steroidogenesis was evaluated by
whole-genome expression in 67 first trimester human embr
72 lite, 4'-OH-2,5-DCB, was then examined using
whole-genome expression microarrays (Affymetrix).
73 We use
whole genomes from 16 clearwater and 12 blackwater popul
74 CUT2, haplotype assembly from a 90x coverage
whole-genome Hi-C data set yielded high-resolution haplo
75 Phylogenetic analysis of the
whole genome identified a cluster of 11 patients and HCW
76 A related future application for GeneImp is
whole-genome imputation based on the off-target reads fr
77 st-stress embryonic brains were assessed for
whole genome level profiling of methylome, transcriptome
78 ation-independent mutational spectrum at the
whole-genome level of a clonally aged population and unc
79 ts are complex and largely unresolved at the
whole-genome level.
80 es and that de novo structure prediction for
whole genomes may be increasingly possible.
81 ental populations of Escherichia coli, using
whole-genome metagenomic sequencing at five hundred-gene
82 he large number of measured loci facilitates
whole genome methylation study, yet posing great challen
83 Whole-genome methylation of DNA from WBCs was measured b
84 Whole-genome molecular phylogenies supported a Tardigrad
85 Whole genome mRNA expression profiling identified nicoti
86 The
whole-genome mutation landscape of melanoma reveals dive
87 Here, we have used
whole-genome Nanopore sequencing to characterize several
88 The IL partitions the
whole genome of the wild species Solanum pennellii in th
89 olitis and Crohn's disease, we sequenced the
whole genomes of 4,280 patients at low coverage and comp
90 Resequencing and analyzing 31
whole genomes of O. sinensis, representing nearly all of
91 We sequenced
whole genomes or a panel of 365 genes on 299 samples fro
92 Here, we performed a
whole-genome phylogenetic analysis of 368 IAV circulatin
93 We use
whole-genome phylogenetics on 182 strains from 17 countr
94 s have been applied to problems ranging from
whole-genome phylogeny to the classification of protein
95 BAC-end sequences (BES) to produce a de novo
whole-genome physical map.
96 Whole-genome polygenic risk scores for the development o
97 Using
whole-genome population resequencing data, we estimated
98 The availability of
whole genome,
proteome and transcriptome data has the po
99 hese demands, which are, however, built upon
whole genome reads mapping tools, and thus may not be se
100 enous DNA (15-46%) of sufficient quality for
whole-genome reconstruction.
101 Such method consists of fitting
whole-genome regression models by subsampling observatio
102 several different cell lineages and present
whole-genome replication timing profiles from cells in e
103 Whole genome resequencing of the human fungal pathogen C
104 The increasing adoption of clinical
whole-genome resequencing (WGS) demands for highly accur
105 We used
whole-genome resequencing data from 34 butterflies to de
106 In this study we compared
whole-genome resequencing data of Atlantic herring popul
107 Here we combine linkage analysis with
whole-genome resequencing in patients with growth hormon
108 From
whole-genome resequencing of 292 Cajanus accessions enco
109 Recent progress in de novo assembly and
whole-genome resequencing of wild and cultivated soybean
110 hed by hybridization with a custom norovirus
whole-genome RNA bait set and deep sequenced on the Illu
111 Using a
whole-genome RNA interference screen, we uncovered 26 no
112 Whole-genome RNA sequencing uncovers novel miR-141-regul
113 roots under K(+) deficiency was analyzed by
whole-genome RNA sequencing.
114 tively slow, prohibiting applications on the
whole-genome scale.
115 ubset of genes previously identified using a
whole genome screening approach.
116 We performed
whole-genome screenings for phylogenetically diagnostic
117 pe similarity >90% (>84% for HDV-1) over the
whole genome sequence.
118 g a discovery population of individuals with
whole-genome sequence (WGS) data from the UK10K project
119 Whole-genome sequence analysis was used to assess the ph
120 Here, we queried
whole-genome sequence data from 1,916 patients across 24
121 We analyzed
whole-genome sequence data from families affected by Alz
122 14,255 AF cases and 374,939 controls, using
whole-genome sequence data from the Icelandic population
123 We generated deep,
whole-genome sequence data of 17 individuals in a three-
124 election operating on IGRs in bacteria using
whole-genome sequence data sets.
125 tive forces operating on bacterial IGRs from
whole-genome sequence data, and suggests that our curren
126 ionships among closely-related bacteria from
whole-genome sequence data.
127 C biopsy specimens in this region, revealing
whole-genome sequence diversity.
128 However, the
whole-genome sequence is sometimes needed for higher res
129 es individual-level phenotypes and realistic
whole-genome sequence or SNP data.
130 A
whole-genome sequence signature analysis identified 3 am
131 We
whole genome sequenced 223 randomly selected M. tubercul
132 ates of H. parasuis that had previously been
whole-genome sequenced and a further 84 isolates from th
133 genetics tool for analysing large cohorts of
whole-genome sequenced samples.
134 scribing data (1998-2014) were combined with
whole genome sequences from 4045 national and internatio
135 he shift in the host preference, we analyzed
whole genome sequences from laboratory and natural popul
136 We used
whole genome sequences of 469 B. pseudomallei isolates f
137 ucture to facilitate the analysis of related
whole genome sequences, in both a population and compara
138 uinolone susceptibility were determined from
whole genome sequences.
139 collected during a 9-month period, including
whole genome sequences; clinical tests, metabolomes, pro
140 Recently,
whole-genome sequences (WGS) of many human and animal pa
141 We determined
whole-genome sequences by Illumina paired-reads sequenci
142 Whole-genome sequences can be used to improve viral clas
143 The reduced costs of sequencing have led to
whole-genome sequences for a large number of microorgani
144 Population genomic analyses of
whole-genome sequences from 32 individuals showed that g
145 Here we examined a data set of
whole-genome sequences from 5,310 M. tuberculosis isolat
146 Whole-genome sequences of representative highly pathogen
147 Specifically, we utilize 7,444
whole-genome sequences to examine the effect of variants
148 Here we use
whole-genome sequences to examine the origin and adaptat
149 By combining very deep
whole genome sequencing ( 1000-fold genome-wide coverage
150 Whole exome sequencing and
whole genome sequencing (WGS) are entering clinical use,
151 Whole genome sequencing (WGS) confirmed that the A. gamb
152 olates (LHL and LGL) were subjected to three
whole genome sequencing (WGS) runs with different device
153 We further performed a
whole genome sequencing (WGS) scan for Alzherimer's dise
154 Whole genome sequencing (WGS) was performed to produce a
155 diagnostic samples were characterized using
whole genome sequencing and combined with epidemiologica
156 We also did
whole genome sequencing and core genome multilocus seque
157 combination of resistant mutant generation,
whole genome sequencing and recombineering to identify t
158 Whole genome sequencing confirmed the ocular vOka strain
159 or several RNA-Seq data sets, as well as the
whole genome sequencing data that was used in the constr
160 Whole genome sequencing data were analyzed for rare pLoF
161 ls to identify and mitigate batch effects in
whole genome sequencing data.
162 ntegrating downstream analysis functions for
whole genome sequencing data.
163 and ten other statistics are applied to the
whole genome sequencing dataset from the TwinsUK study.
164 tifies causative variants in whole exome and
whole genome sequencing datasets and provides a powerful
165 generation of resistant mutants followed by
whole genome sequencing has often been successful in unc
166 l tools for copy-number variation calling in
whole genome sequencing have been published, the noisy n
167 Whole genome sequencing identified a highly expressed FG
168 Whole genome sequencing in 98 Hutterites, a founder popu
169 mportance and power of strain validation and
whole genome sequencing in this context.
170 Whole genome sequencing mixes the signals of sampled pop
171 Whole genome sequencing of CFW-passaged strains showed n
172 Surprisingly,
whole genome sequencing revealed that the coastal region
173 Whole genome sequencing revealed that the strain carried
174 With the advent of
whole genome sequencing we are in the midst of a paradig
175 Large sample sets of
whole genome sequencing with deep coverage are being gen
176 So, with the increasing popularity of
whole genome sequencing, the need has emerged for a fast
177 However, compared to
whole genome sequencing, WES introduces more biases and
178 Using a
whole genome sequencing-based approach, we developed two
179 time polymerase chain reaction (rt-PCR), and
whole genome sequencing.
180 typing assay based on target enrichment and
whole-genome sequencing (eWGS).
181 Whole-genome sequencing (WGS) allows for a comprehensive
182 ciated with these outbreaks were analyzed by
whole-genome sequencing (WGS) analysis.
183 Whole-genome sequencing (WGS) can generate antibiotic su
184 Whole-genome sequencing (WGS) can help by providing comp
185 Whole-genome sequencing (WGS) can provide excellent reso
186 Whole-genome sequencing (WGS) could offer significant ad
187 Whole-genome sequencing (WGS) data enable the improvemen
188 le X syndrome, is challenging for short-read
whole-genome sequencing (WGS) data.
189 The application of
whole-genome sequencing (WGS) has become routine for tra
190 Whole-genome sequencing (WGS) has the potential to accel
191 n-based Estonian Biobank using high-coverage
whole-genome sequencing (WGS) in 2,284 samples and SNP g
192 Whole-genome sequencing (WGS) in asymptomatic adults mig
193 Whole-genome sequencing (WGS) is a newer alternative for
194 Whole-genome sequencing (WGS) is an emerging and powerfu
195 million sequence variants identified through
whole-genome sequencing (WGS) of 15,220 Icelanders for a
196 port approximately 9.5 million variants from
whole-genome sequencing (WGS) of a Cretan-isolated popul
197 We used
whole-genome sequencing (WGS) of consecutive C. difficil
198 e performed whole-exome sequencing (WES) and
whole-genome sequencing (WGS) on AVM tissue from affecte
199 This study used
whole-genome sequencing (WGS) to determine strain relate
200 otransposon capture sequencing (mRC-seq) and
whole-genome sequencing (WGS) to pedigrees of C57BL/6J a
201 The organism-specific bioinformatics
whole-genome sequencing (WGS) typing pipelines at Public
202 robiology laboratories underwent culture and
whole-genome sequencing (WGS), using WGS to identify tox
203 e using pulsed-field gel electrophoresis and
whole-genome sequencing (WGS).
204 tection, and outbreak investigation by using
whole-genome sequencing (WGS).
205 bset of patients from the Western Cape using
whole-genome sequencing (WGS; n=149), a cough aerosol sa
206 data analysis from targeted, whole-exome, or
whole-genome sequencing a wellspring to identify new SNP
207 Whole-genome sequencing analysis of lung adenocarcinomas
208 Whole-genome sequencing and a genome-wide association st
209 s with the blaOXA-232 gene were subjected to
whole-genome sequencing and chromosome single-nucleotide
210 We subjected these strains to
whole-genome sequencing and evolutionary convergence ana
211 mprised 95 primary PDAC cases that underwent
whole-genome sequencing and expression microarray on bul
212 In this study, we used
whole-genome sequencing and gene expression profiling of
213 cal immunology, as well as new approaches of
whole-genome sequencing and genes newly reported to be a
214 In this study,
whole-genome sequencing and high-resolution (13)C-metabo
215 Whole-genome sequencing and induced pluripotent stem cel
216 We used
whole-genome sequencing and phylogenetic analysis to inv
217 Whole-genome sequencing can measure of the heterogeneity
218 Here using a large
whole-genome sequencing data bank, cancer registry and c
219 However,
whole-genome sequencing data revealed at least five inde
220 es tumor content in cfDNA from 0.1x coverage
whole-genome sequencing data without prior knowledge of
221 increasingly available genotyping tools and
whole-genome sequencing data, and argue for a better int
222 tationally fast, enabling the application to
whole-genome sequencing data, and straightforward to imp
223 mbining high-coverage exome and low-coverage
whole-genome sequencing data, utilizing information from
224 germline structural variation breakpoints in
whole-genome sequencing data.
225 105X mean physical coverage and linked-read
whole-genome sequencing from 10X Genomics, we document s
226 umannii isolates previously characterized by
whole-genome sequencing from the CDC-FDA Antibiotic Resi
227 Whole-genome sequencing gives unprecedented power to det
228 More recently, M. tuberculosis
whole-genome sequencing has been used to estimate popula
229 Whole-exome and
whole-genome sequencing have facilitated the large-scale
230 Whole-genome sequencing identified specific genes associ
231 Whole-genome sequencing is an increasingly important com
232 We performed
whole-genome sequencing of 102 primary PanNETs and defin
233 ally multi-allelic clusters, identified from
whole-genome sequencing of 228 DO mice.
234 Phylogenetic analysis based on
whole-genome sequencing of 250 isolates revealed two maj
235 To address this issue, we carried out 60x
whole-genome sequencing of 26 metastases from four patie
236 mutations in an additional 182 families, and
whole-genome sequencing of 4 of the remaining 242 famili
237 er controlled laboratory conditions; and (4)
whole-genome sequencing of clinical and environmental is
238 Here, we show
whole-genome sequencing of DNA and RNA in 94 Chinese ind
239 We are performing
whole-genome sequencing of families with autism spectrum
240 er with in vitro microbiology approaches and
whole-genome sequencing of Methanomicrobium mobile, a ke
241 We further performed
whole-genome sequencing of nosocomial MDRPa strains to e
242 Whole-genome sequencing of pathogens from host samples b
243 In conclusion,
whole-genome sequencing of samples obtained following ne
244 rtants, vaccine strains, and field isolates,
whole-genome sequencing of the M. gallisepticum vaccine
245 Whole-genome sequencing of three mangrove species furthe
246 ycoplasma hominis isolates were subjected to
whole-genome sequencing on the Illumina NextSeq platform
247 al isolates previously characterized through
whole-genome sequencing or targeted PCR as to the presen
248 Recently, a
whole-genome sequencing project was launched on the wild
249 the outbreak strains from flour samples, and
whole-genome sequencing revealed that the isolates from
250 Whole-genome sequencing revised 93% of karyotypes and de
251 Whole-genome sequencing showed close relationships betwe
252 (PTC), applying a combined linkage-based and
whole-genome sequencing strategy and identified an in-fr
253 genes from publicly available whole-exome or
whole-genome sequencing studies (4167 probands plus 1786
254 riants of unknown significance identified in
whole-genome sequencing studies.
255 We used a novel HPV
whole-genome sequencing technique to evaluate an excepti
256 applied molecular genetics, proteomics, and
whole-genome sequencing to demonstrate that the MMAR_003
257 he need for prescreening of patients through
whole-genome sequencing to ensure safety.
258 We used single-cell
whole-genome sequencing to perform genome-wide somatic s
259 Here, we used
whole-genome sequencing to scan high-altitude Andeans fo
260 Isolates were analysed by next-generation
whole-genome sequencing using Illumina and Pacific Biosc
261 Progress in
whole-genome sequencing using short-read (e.g., <150 bp)
262 Whole-genome sequencing was applied to investigate the g
263 Shallow
whole-genome sequencing was performed on an Illumina pla
264 Whole-genome sequencing was performed on human and fish
265 Whole-genome sequencing was performed on isolates from c
266 Whole-genome sequencing was performed on study isolates
267 Here,
whole-genome sequencing was used to demonstrate nosocomi
268 Whole-exome sequencing or
whole-genome sequencing was used to identify the causati
269 Spoligotyping and
whole-genome sequencing were performed to ascertain homo
270 lenged by screening on admission studies and
whole-genome sequencing, providing evidence for an endog
271 olony mutants were subjected to MIC testing,
whole-genome sequencing, reverse transcription-quantitat
272 y of data types, including exome sequencing,
whole-genome sequencing, RNA-seq, ChIP-seq, targeted seq
273 We performed
whole-genome sequencing, structural modelling and cytoge
274 cotton, and a new-generation approach to the
whole-genome sequencing, which will lead to the referenc
275 hIP-seq, targeted sequencing and single-cell
whole-genome sequencing, with a minimal requirement for
276 rganoids, followed by delayed subcloning and
whole-genome sequencing.
277 eight drugs, confirmatory Wayne's assay, and
whole-genome sequencing.
278 s opportunities and challenges introduced by
whole-genome sequencing.
279 hybrid population over the past decade using
whole-genome sequencing.
280 reaction analysis, slide agglutination, and
whole-genome sequencing.
281 and we characterized this interaction using
whole-genome sequencing.
282 have opened new possibilities for 'benchtop'
whole-genome sequencing.
283 , 2008-2013, using both long- and short-read
whole-genome sequencing.
284 ene expression as a quantitative trait using
whole genome-
sequencing and transcriptome analysis allow
285 De novo assembly of
whole genome shotgun (WGS) next-generation sequencing (N
286 This was generated using
whole-genome shotgun Illumina reads plus in vitro proxim
287 s available to classify microorganisms using
whole-genome shotgun sequencing data, comprehensive comp
288 and metagenomic (16S ribosomal RNA gene and
whole-genome shotgun sequencing) approaches to 144 nasop
289 , including ordered-clone genome sequencing,
whole-genome shotgun sequencing, and BioNano optical gen
290 We subsequently reported a
whole-genome small interfering RNA screening for factors
291 s in primary RGCs, including use of arrayed,
whole-genome,
small interfering RNA libraries.
292 mbly of metagenome sequences does not output
whole genomes,
so computational binning methods have bee
293 Large-scale
whole-genome studies of copy number variation in Han Chi
294 p2 and SynMap3D allow researchers to explore
whole genome synteny patterns (across two or three genom
295 from Nicotiana tabacum was determined using
whole genome tiling arrays.
296 ids, further establishing the existence of a
whole-genome triplication at the base of the Asterids II
297 We provide evidence for a
whole-genome triplication event specific but basal to th
298 g how viral load evolves on the phylogeny of
whole-genome viral sequences.
299 d from the individual genotypes derived from
whole-genome (
WGS) or whole-exome (WES) sequencing.
300 on of DNA methylation at each CpG across the
whole genome with prenatal arsenic exposure levels and w