1 s from the information-dense world wide web (
WWW).
2 accessible superconducting transmon device (
www.
3 American Board of Psychiatry and Neurology (
www.
abpn.com ).
4 American Board of Psychiatry and Neurology (
www.
abpn.com ).
5 American Board of Psychiatry and Neurology (
www.
abpn.com ).
6 abYsis is available at
www.
abysis.org.
7 Addgene (
www.
addgene.org) is a nonprofit organization that facili
8 of approved allergen names on its Web site,
www.
allergen.org.
9 rs are available online at www.jcaai.org and
www.
allergyparameters.org.
10 The AlloRep database (freely available at
www.
AlloRep.org) is a key resource for future evolutiona
11 However, the World Wide Web (
WWW)
also allows for the rapid dissemination of unsubsta
12 dation sites were retrieved from the data at
www.
altmetric.com.
13 These trials were registered at
www.
anzctr.org.au as 12613000899741 and 12614000837628.
14 and Infant Outcomes trial was registered at
www.
anzctr.org.au as ACTRN1260500056906.
15 The SCOPE pregnancy cohort was registered at
www.
anzctr.org.au as ACTRN12607000551493.
16 lia and New Zealand Clinical Trial Registry (
www.
anzctr.org.au) as ACTRN12613000899741.
17 inical Trials Registry: ACTRN12610000940077 (
www.
anzctr.org.au).
18 Additional information is available at
www.
asco.org/Brachytherapy-guideline and www.asco.org/gu
19 Additional information is available at
www.
asco.org/breast-cancer-guidelines and www.asco.org/g
20 Additional information can be found at
www.
asco.org/breast-cancer-guidelines and www.asco.org/g
21 Additional information is available at
www.
asco.org/chronic-pain-guideline and www.asco.org/gui
22 Additional information is available at:
www.
asco.org/CRC-markers-guideline and www.asco.org/guid
23 Additional information is available at
www.
asco.org/genitourinary-cancer-guidelines and www.asc
24 Additional information is available at
www.
asco.org/glioblastoma-radiotherapy-endorsement and w
25 Additional information is available at
www.
asco.org/guidelines/antiemetics and www.asco.org/gui
26 Additional information is available at
www.
asco.org/guidelines/endocrinebreast and www.asco.org
27 Additional information is available at
www.
asco.org/guidelines/LAPC and www.asco.org/guidelines
28 vailable at www.asco.org/guidelines/LAPC and
www.
asco.org/guidelines/MetPC and www.asco.org/guideline
29 Additional information is available at
www.
asco.org/guidelines/MetPC and www.asco.org/guideline
30 Additional information is available at
www.
asco.org/guidelines/PCPC and www.asco.org/guidelines
31 www.asco.org/supportive-care-guidelines and
www.
asco.org/guidelineswiki ).
32 rg/glioblastoma-radiotherapy-endorsement and
www.
asco.org/guidelineswiki .
33 at www.asco.org/breast-cancer-guidelines and
www.
asco.org/guidelineswiki .
34 at: www.asco.org/survivorship-guidelines and
www.
asco.org/guidelineswiki .
35 www.asco.org/thoracic-cancer-guidelines and
www.
asco.org/guidelineswiki .
36 asco.org/genitourinary-cancer-guidelines and
www.
asco.org/guidelineswiki .
37 www.asco.org/head-neck-cancer-guidelines and
www.
asco.org/guidelineswiki .
38 e at www.asco.org/lung-cancer-guidelines and
www.
asco.org/guidelineswiki .
39 www.asco.org/head-neck-cancer-guidelines and
www.
asco.org/guidelineswiki .
40 able at www.asco.org/melanoma-guidelines and
www.
asco.org/guidelineswiki .
41 ww.asco.org/HNC-Survivorship-endorsement and
www.
asco.org/guidelineswiki .
42 at www.asco.org/breast-cancer-guidelines and
www.
asco.org/guidelineswiki .
43 at www.asco.org/Brachytherapy-guideline and
www.
asco.org/guidelineswiki .
44 www.asco.org/supportive-care-guidelines and
www.
asco.org/guidelineswiki .
45 e at www.asco.org/guidelines/antiemetics and
www.
asco.org/guidelineswiki.
46 s/LAPC and www.asco.org/guidelines/MetPC and
www.
asco.org/guidelineswiki.
47 e at www.asco.org/chronic-pain-guideline and
www.
asco.org/guidelineswiki.
48 vailable at www.asco.org/guidelines/PCPC and
www.
asco.org/guidelineswiki.
49 e at www.asco.org/NACT-ovarian-guideline and
www.
asco.org/guidelineswiki.
50 www.asco.org/guidelines/endocrinebreast and
www.
asco.org/guidelineswiki.
51 ailable at www.asco.org/guidelines/MetPC and
www.
asco.org/guidelineswiki.
52 e at: www.asco.org/CRC-markers-guideline and
www.
asco.org/guidelineswiki.
53 Additional information is available at:
www.
asco.org/head-neck-cancer-guidelines and www.asco.or
54 Additional information is available at
www.
asco.org/head-neck-cancer-guidelines and www.asco.or
55 Additional information is available at
www.
asco.org/HNC-Survivorship-endorsement and www.asco.o
56 Additional information is available at
www.
asco.org/lung-cancer-guidelines and www.asco.org/gui
57 Additional information is available at
www.
asco.org/melanoma-guidelines and www.asco.org/guidel
58 Additional information is available at
www.
asco.org/NACT-ovarian-guideline and www.asco.org/gui
59 of refractoriness to platelet transfusion (
www.
asco.org/supportive-care-guidelines and www.asco.org
60 Additional information is available at
www.
asco.org/supportive-care-guidelines and www.asco.org
61 ntin.Additional information is available at:
www.
asco.org/survivorship-guidelines and www.asco.org/gu
62 Additional information is available at:
www.
asco.org/thoracic-cancer-guidelines and www.asco.org
63 The C ++ implementation is available at
www.
beerlab.org/gkmsvm
64 BindingDB,
www.
bindingdb.org, is a publicly accessible database of
65 BioCIDER (
www.
biocider.org) is an open-source platform.
66 bioinformatics are available open-source at
www.
bioconductor.org under the Artistic-2.0 license.
67 icly available Bioconductor package, npGSEA (
www.
bioconductor.org) .
68 ial and usage hints is available from http://
www.
bioconductor.org.
69 ewire is available on BioConductor at http://
www.
bioconductor.org/packages/2.13/bioc/html/BiRewire.ht
70 he package is available from Bioconductor at
www.
bioconductor.org/packages/derfinder.
71 freely available as part of Bioconductor at
www.
bioconductor.org/packages/devel/bioc/html/BEAT.html.
72 DupliPHY-Web is available at
www.
bioinf.manchester.ac.uk/dupliphy/
73 gether with segemehl and freely available at
www.
bioinf.uni-leipzig.de/Software/segemehl/.
74 PyRosetta scripts available at
www.
bioinfo.rpi.edu/bystrc/downloads.html#ensemble
75 The BioMart Community Portal (
www.
biomart.org) is a community-driven effort to provide
76 GeneSense is freely available at
www.
biomedsense.org/genesense.php.
77 in the survHD package, available from http://
www.
bitbucket.org/lwaldron/survhd and submitted to Bioco
78 year, can be found on the Blood Web site at
www.
bloodjournal.org/collection/blood-flashback.
79 via public data repositories and via http://
www.
braineac.org/.
80 nized by the Barcelona Respiratory Network (
www.
brn.cat ) and the AJRCCM in June 2014.
81 the commonly used Integrated Genome Viewer (
www.
broadinstitute.org/igv/).
82 Bayesian integration to assemble MitoCarta (
www.
broadinstitute.org/pubs/MitoCarta): an inventory of
83 for indelMINER can be freely downloaded from
www.
bx.psu.edu/miller_lab/indelMINER.tar.gz .
84 iformly distributed between 18 and 88 years (
www.
cam-can.com).
85 large (N = 315), population-derived sample (
www.
cam-can.org), we provide evidence for three memory f
86 The Cancer3D database at http://
www.
cancer3d.org gives an open and user-friendly way to
87 he Seven Bridges Cancer Genomics Cloud (CGC;
www.
cancergenomicscloud.org) enables researchers to rapi
88 omplications after OLT surgery (available at
www.
carolt.us); this score may be useful for identificat
89 s this need, we have generated CauloBrowser (
www.
caulobrowser.org), an online resource for Caulobacte
90 to the carbohydrate-active enzymes database (
www.
cazy.org), our predictor achieved above 86% accuracy
91 are presented in our database accessible at
www.
cazy.org/PULDB/index.php.
92 ks to the software are available from http://
www.
cbrg.ox.ac.uk/data/pivotviewer/.
93 Center Cost-Effectiveness Analysis Registry (
www.
cearegistry.org), focusing on studies of innovative
94 terface and Graphics (CHARMMing) web portal (
www.
charmming.org) to the Chemistry at HARvard Macromole
95 terface and Graphics (CHARMMing) web portal (
www.
charmming.org).
96 ChemRICH is available at
www.
chemrich.fiehnlab.ucdavis.edu.
97 CHiCP is freely accessible from
www.
chicp.org and supports most major HTML5 compliant we
98 related challenges, we built CitSci.org (see
www.
citsci.org), a customizable platform that allows use
99 Clinical trial registered with
www.
clinicaltrial.gov (NCT 00422747).
100 Controlled Clinical Trials, and the Web site
www.
ClinicalTrials.gov .
101 Controlled Trials; conference abstracts; and
www.
clinicaltrials.gov with no language restriction.
102 Clinical trial registered with
www.
clinicaltrialsregister.eu (2011-002082-38).
103 Clinical trial registered with
www.
clinicaltrialsregister.eu (2014-000306-36).
104 ackage 'rvsel' can be downloaded from http://
www.
columbia.edu/ approximately sw2206/ and http://stats
105 was registered at Current Controlled Trials (
www.
controlled-trials.com) as ISRCTN71468401.
106 trial was registered at BioMed Central Ltd (
www.
controlledtrials.com) as ISRCTN04271658.
107 he source code can be downloaded from http://
www.
cs.duke.edu/donaldlab/osprey.php or http://iiis.tsin
108 on and Matlab version is available at http://
www.
cs.unc.edu/ approximately weicheng/.
109 implemented in MATLAB and Java available at
www.
cs.utsa.edu/ approximately jruan/PCC/.
110 The data and code are available at:
www.
csbio.sjtu.edu.cn/bioinf/SemiBiomarker/.
111 rogation of the transcriptomes (available at
www.
ddbj.nig.ac.jp) and proteomes of the diverse compart
112 ignSignatures is accessible as a web tool at
www.
DECIPHER.cee.wisc.edu, or as part of the DECIPHER op
113 Codes and results are available at
www.
deepchrome.org
114 ly available for future comparison at http://
www.
dei.unipd.it/node/2357.
115 SeqSero (
www.
denglab.info/SeqSero) is a novel Web-based tool for
116 The Drug-Gene Interaction Database (DGIdb,
www.
dgidb.org) is a web resource that consolidates dispa
117 Database of Protein Disorder (DisProt, URL:
www.
disprot.org) has been significantly updated and upgr
118 The resource is available at
www.
dsmz.de/miBC.
119 Please see related article:
www.
dx.doi.org/10.1186/s13059-015-0724-z.
120 om data.Please see related Research article:
www.
dx.doi.org/10.1186/s13059-016-0968-2.
121 cer.Please see the related Research article:
www.
dx.doi.org/10.1186/s13059-016-1028-7 .
122 . and Newman et al. correspondence articles:
www.
dx.doi.org/10.1186/s13059-017-1256-5 and www.dx.doi.
123 .Please see related Li et al correspondence:
www.
dx.doi.org/10.1186/s13059-017-1256-5 and Zheng corre
124 www.dx.doi.org/10.1186/s13059-017-1256-5 and
www.
dx.doi.org/10.1186/s13059-017-1257-4.
125 /s13059-017-1256-5 and Zheng correspondence:
www.
dx.doi.org/10.1186/s13059-017-1258-3.
126 European Bioinformatics Institute (EMBL-EBI,
www.
ebi.ac.uk) are continually expanding: total disk cap
127 ure includes a new graphical user interface (
www.
ebi.ac.uk/gwas/), ontology supported search function
128 nually curated resource, the Complex Portal (
www.
ebi.ac.uk/intact/complex), through which protein com
129 cess to this data through the website http://
www.
ebi.ac.uk/ipd/.
130 of the method is freely available at http://
www.
ee.kth.se/ctsoftware; source code that does not requ
131 tion: See supplementary protocols and http://
www.
egr.msu.edu/changroup/Protocols%20Index.html.
132 on Article Withdrawal can be found at http://
www.
elsevier.com/locate/withdrawalpolicy.
133 zed from the original histological sections (
www.
emouseatlas.org/emap/eHistology/index.php) used by K
134 ation and download at the new ENCODE Portal (
www.
encodeproject.org).
135 mented as part of the STELLS program: http://
www.
engr.uconn.edu/ approximately ywu/STELLS.html.
136 visualization of the results is available at
www.
enigma-viewer.org.
137 Ensembl (
www.
ensembl.org) is a database and genome browser for en
138 ) in the electronic supplement, and website (
www.
farsight-toolkit.org).
139 three widely used automated toolboxes: SPM (
www.
fil.ion.ucl.ac.uk/spm/ ), FreeSurfer ( surfer.nmr.mg
140 rt DGET, a Drosophila Gene Expression Tool (
www.
flyrnai.org/tools/dget/web/ ), which stores and faci
141 The FoldAtlas website can be accessed at
www.
foldatlas.com Source code is freely available at git
142 rious NZFCDB output products on the website:
www.
foodcomposition.co.nz.
143 CLIC is freely available at
www.
gene-clic.org.
144 d into a large-scale coexpression database (
www.
gene2function.de), enabling identification of duplic
145 GeNemo is available at
www.
genemo.org.
146 oherent phenome for any experimental cohort (
www.
genenetwork.org).
147 The GeneWeaver data and analytics website (
www.
geneweaver.org) is a publically available resource f
148 rl and Javascript and is freely available at
www.
genomegeek.com and www.sanger.ac.uk/science/tools/mp
149 under the General Public License (GPLv3) at
www.
genomic.ch/edena.php.
150 software, whose source code is available at
www.
github.com/alexandrupaler/tqec, is used to illustrat
151 ode is freely available in Github at https://
www.
github.com/arq5x/poretools.
152 al, and a tutorial are available publicly at
www.
github.com/billgreenwald/pgltools , and a python mod
153 Clonify is freely available at
www.
github.com/briney/clonify-python.
154 1, and is available under a GPLv3 license at
www.
github.com/COMBINE-lab/quark.
155 PconsFold is available on GitHub at https://
www.
github.com/ElofssonLab/pcons-fold under the MIT lice
156 freely available under Apache 2.0 license at
www.
github.com/Ensembl/Wiggletools
157 ls/mpranator The source code is available on
www.
github.com/hemberg-lab/MPRAnator/ under the MIT lice
158 The source code for MitoTIP is available at
www.
github.com/sonneysa/MitoTIP.
159 g the GRADE profiler software (available at:
www.
gradeworkinggroup.org).
160 H3ABioNet (
www.
h3abionet.org), the Pan African Bioinformatics Netwo
161 bitor Deficiency Workshop in Budapest, 2015 (
www.
haenet.hu), pediatric data were presented and discus
162 T is freely available for download at http://
www.
hanzhang.name/softwares/treat, implemented in C++ an
163 he source code is freely available at http://
www.
healthcare.uiowa.edu/labs/tan/M-module.zip.
164 cellular localization and function of the C2-
WWW-
HECT domain E3 family of ligases regulating these pr
165 ch interacts with multiple members of the C2-
WWW-
HECT domain E3 family of ligases.
166 telaprevir triple therapy was assessed using
www.
hep-druginteractions.org and the relevant prescribin
167 ccurate heritability maps of the human face (
www.
heritabilitymaps.info).
168 onents of the Human Phenotype Ontology (HPO;
www.
human-phenotype-ontology.org) project are the phenot
169 The IEDB,
www.
iedb.org, contains information on immune epitopes--t
170 eely available as a command-line software at
www.
ieg.uu.se/Jakobsson/software/HaploPOP/.
171 Implementation in R freely available at
www.
iki.fi/mpirinen .
172 of the guidelines (long version available at
www.
ilts.org) with the final recommendations graded for
173 Video podcast available Go to
www.
immunologicalreviews.com to watch an interview with
174 The CryptoNet web server (
www.
inetbio.org/cryptonet) is a public resource that pro
175 Here, we present a web server, GWAB (
www.
inetbio.org/gwab), for the network-based boosting of
176 WormNet v3 is freely accessible at http://
www.
inetbio.org/wormnet.
177 The Gene Expression Database (GXD;
www.
informatics.jax.org/expression.shtml) is an extensiv
178 InterMine (
www.
intermine.org) is a biological data warehousing syst
179 resources and documentation can be found at
www.
isb-cgc.org Cancer Res; 77(21); e7-10.
180 Clinical trial registered with
www.
isrctn.com (ISRCTN 18642314) and www.sanctr.gov.za (
181 Clinical trial registered with
www.
isrctn.com (ISRCTN 69543196).
182 The trial was registered at
www.
isrctn.com as #68454111.
183 The trial was registered at
www.
isrctn.com as ISRCTN08280229.
184 e ShopSmart 4 Health trial was registered at
www.
isrctn.com as ISRCTN48771770.
185 UK AML15 and AML17 trials are registered at
www.
isrctn.com/ISRCTN17161961 and www.isrctn.com/ISRCTN5
186 istered at www.isrctn.com/ISRCTN17161961 and
www.
isrctn.com/ISRCTN55675535 respectively.
187 feeding Intervention Trial was registered at
www.
isrctn.org as ISRCTN-37687716.
188 Practice parameters are available online at
www.
jcaai.org and www.allergyparameters.org.
189 The database, PrenDB (
www.
kolblab.org/prendb.php), enables the prediction of p
190 Source code is available at
www.
kostkalab.net/software.
191 udy provide the basis for the German website
www.
krankheitserfahrungen.de .
192 CrypSplice is available at
www.
liuzlab.org/CrypSplice.
193 The LCB application is available at http://
www.
maayanlab.net/LINCS/LCB.
194 c and scientific communities via our website
www.
mechbio.org.
195 network evolution and dynamics (available at
www.
medyan.org).
196 data to the Metabolomics Workbench website (
www.
metabolomicsworkbench.org ), encompassing 1481 chrom
197 The Metabolomics Workbench, available at
www.
metabolomicsworkbench.org, is a public repository fo
198 Minepath: (
www.
minepath.org ) is a web-based platform that elaborat
199 pression and the data analysed with mirBase (
www.
mirbase.org).
200 or (MitoTIP) is available through MITOMAP at
www.
mitomap.org.
201 -cell SELEX-Seq data are available at http://
www.
morgridge.net/Aptamer/.
202 Here we present MorphoGraphX (
www.
MorphoGraphX.org), a software that bridges this gap
203 Software available at
www.
msu.edu/%7Ejinchen/DynamicFilter .
204 and supplementary document are available at
www.
msu.edu/%7Ejinchen/GOExtender
205 rary is hosted at the public MCID Web site (
www.
MyCompoundID.org ), and a spectral search program, M
206 n implemented in a freely available Website,
www.
mycompoundid.org .
207 search program, DnsID, has been developed in
www.
MyCompoundID.org for automated identification of dan
208 is program can be freely downloaded from the
www.
MyCompoundID.org web site for noncommercial use.
209 freely available for noncommercial use from
www.
mycompoundid.org/IsoMS.
210 lysis services, begin at the NCBI home page:
www.
ncbi.nlm.nih.gov.
211 The NCBI Assembly database (
www.
ncbi.nlm.nih.gov/assembly/) provides stable accessio
212 e HomoloGene database is available at http://
www.
ncbi.nlm.nih.gov/CBBresearch/Wilbur/IRET/CLUSTERING_
213 GenBank((R)) (
www.
ncbi.nlm.nih.gov/genbank/) is a comprehensive databa
214 GenBank((R)) (
www.
ncbi.nlm.nih.gov/genbank/) is a comprehensive databa
215 chnology Information's (NCBI) Gene database (
www.
ncbi.nlm.nih.gov/gene) integrates gene-specific info
216 NCBI RefSeq genome collection http://
www.
ncbi.nlm.nih.gov/genome represents all three major d
217 The sequence data is available at
www.
ncbi.nlm.nih.gov/sra/?term(1/4)SRP075893 .
218 rk Data Exchange (NDEx) online data commons (
www.
ndexbio.org) and the ways in which it can be used to
219 CRC portal can be freely accessed at http://
www.
netgestalt.org.
220 operating systems are available from http://
www.
nmr-relax.com.
221 s and video tutorials can be found at http://
www.
nmrfam.wisc.edu/nmrfam-sparky-distribution.htm.
222 PEASE is freely available on the web at
www.
ofranlab.org/PEASE.
223 nd can be accessed at the following webpage:
www.
ohalloranlab.net/STITCHER2.html.
224 ed to the 1000 Plants transcriptome project (
www.
onekp.com) data set.
225 fort, the Open Source Seed Initiative (OSSI,
www.
osseeds.org), aims to ensure access to crop genetic
226 al Trial registration: PACTR201411000937373 (
www.
pactr.org).
227 nical Trials Registry: PACTR201102000277177 (
www.
pactr.org).
228 C (Pathosystems Resource Integration Center,
www.
patricbrc.org) to support infectious disease researc
229 assava root proteomics data are available at
www.
pep2pro.ethz.ch for easy access and comparison with
230 SweepFinder2 is a freely-available (
www.
personal.psu.edu/mxd60/sf2.html) software package th
231 Herein, we describe how content on
www.
personalizedcancertherapy.org is generated and maint
232 The Personalized Cancer Therapy website (
www.
personalizedcancertherapy.org) was created to provid
233 web application freely available for use at
www.
phandango.net and includes a diverse collection of d
234 PhenoScanner is available at
www.
phenoscanner.medschl.cam.ac.uk
235 ractions database (PHI-base) is available at
www.
phi-base.org PHI-base contains expertly curated mole
236 se of different MIA-producing plant species (
www.
phytometasyn.ca).
237 PhytoPath (
www.
phytopathdb.org) is a resource for genomic and pheno
238 se and documentation are available at http://
www.
pip-db.org.
239 ented in R and is freely available at http://
www.
pitt.edu/~mchikina/BIRRA/.
240 ly 40% of total demand for plastic products (
www.
plasticseurope.org) with over a trillion plastic bag
241 %) and energy recovery (36%) via combustion (
www.
plasticseurope.org), carrying a heavy environmental
242 A simple, interactive public web tool (
www.
plateletomics.com) was developed that permits querie
243 DeepSite is freely available at
www.
playmolecule.org.
244 ntegrated in the open-source PLUMED plug-in (
www.
plumed-code.org), and can be therefore readily used
245 PLUMED-ISDB is freely available at
www.
plumed.org.
246 m the previous study of the PreventCD trial (
www.
preventcd.com).Gluten intake was prospectively quant
247 PMD is now freely available at
www.
proteinmicroarray.cn.
248 of published proteome datasets accessible at
www.
proteomaps.net.
249 ble at the open-access nanotoxicity database
www.
QuantWorm.org/nano.
250 tion, and examples are publicly available at
www.
radiomics.io With this platform, we aim to establish
251 ducational materials are freely available at
www.
rcsb.org.
252 accessed through the RCSB website at http://
www.
rcsb.org/pdb/workbench/workbench.do.
253 The Reactome Knowledgebase (
www.
reactome.org) provides molecular details of signal t
254 The DRIE study was registered at
www.
researchregister.org.uk as 122273.
255 tasets made available without encumbrance at
www.
rnaseq.wiki.
256 of the Rosetta software suite, available at
www.
rosettacommons.org .
257 of the Rosetta software suite, available at
www.
rosettacommons.org .
258 ed with www.isrctn.com (ISRCTN 18642314) and
www.
sanctr.gov.za (DOH-27-0711-3568).
259 The WGE database is freely available at
www.
sanger.ac.uk/htgt/wge
260 candidates can be browsed through at http://
www.
sanger.ac.uk/resources/databases/phenodigm/gene/seco
261 s freely available at www.genomegeek.com and
www.
sanger.ac.uk/science/tools/mpranator The source code
262 Supporting Website:
www.
sb.cs.cmu.edu/TPS.
263 e human proteome is available to download at
www.
sbg.bio.ic.ac.uk/suspect/download.html.
264 challenge design and outcome is available at
www.
sbvimprover.com.
265 is publicly available for download at http://
www.
seqan.de/projects/fiona.
266 Y System (Sequenom Inc., San Diego, CA, USA,
www.
sequenom.com) to assay multiplex PCR-amplified singl
267 ary networks along with a tutorial at http://
www.
shawlab.org/NetComm/.
268 n be installed as an extension to 3D Slicer (
www.
slicer.org).
269 nd binaries freely available for download at
www.
smoldyn.org, implemented in C/C++ and supported on L
270 executable available for download at http://
www.
sourceforge.net/p/mitsu-motif/, supported on Linux/O
271 CPAG is freely available at
www.
sourceforge.net/projects/CPAG/.
272 as been implemented in Java and available at
www.
sourceforge.net/projects/probeselect.
273 ing a SPRET/Ei M. spretus variants web tool (
www.
spretus.org), including a manual.
274 R codes for SALPS are available at http://
www.
stanford.edu/%7eclairesr/software.html.
275 ed in the software SVDquartets, available at
www.
stat.osu.edu/ approximately lkubatko/software/SVDqua
276 lemented as an R-package available at http://
www.
stat.osu.edu/ approximately statgen/SOFTWARE/LBL/.
277 procedures is freely available on the web at
www.
stat.purdue.edu/ approximately doerge/.
278 See '
www.
stat.ucla.edu/ approximately zhou/TFKFunctions/' for
279 Available at http://
www.
stat.wisc.edu/ approximately qizhang/
280 of the program is freely available at http://
www.
stats.ox.ac.uk/research/proteins/resources.
281 Our software is available from http://
www.
stats.ox.ac.uk/research/proteins/resources.
282 rough the Project Grandiose portal at http://
www.
stemformatics.org.
283 ackage CCPROMISE is currently available from
www.
stjuderesearch.org/site/depts/biostats/software .
284 The Toxin-Toxin-Target Database (T3DB--
www.
t3db.ca) is a resource that was specifically designe
285 A web-based atlas at
www.
targetgenereg.org enables assessing the regulation o
286 Using
www.
targetscan.org, we determined which microRNAs potent
287 (e.g., for the MRI scanner) upon request at
www.
tnp2lab.org .
288 The new model (
www.
TransplantScore.com) showed the overall best discrim
289 Clinical trial registry: yes,
www.
trialregister.nl, trial number: NTR5385.
290 Clinical trial registered with
www.
trialregister.nl/trialreg/admin/rctview.asp?TC=2603
291 klist in their submission (also available at
www.
tripod-statement.org).
292 TRIPOD checklist can also be downloaded from
www.
tripod-statement.org.
293 nying manual are freely available at https://
www.
uea.ac.uk/computing/psiko.
294 vailable for use in standard LCA studies via
www.
usetox.org and in standard LCA software.
295 VarMod is available for use at http://
www.
wasslab.org/varmod.
296 rovides free access to all these services at
www.
wdcm.org.
297 vide an important chronobiological resource (
www.
wgpembroke.com/shiny/SCNseq/) and allow us to propos
298 heat (Triticum aestivum) expression browser (
www.
wheat-expression.com) that can be expanded with user
299 WormBase (
www.
wormbase.org) is a central repository for research d
300 is implemented in MACAU, freely available at
www.
xzlab.org/software.html.