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2 lesions that covalently link the Watson and Crick strands of the double helix, are repaired by a com
3 processor is used to separate the Watson and Crick strands of the double-stranded chromosomal DNA in
5 describing the DNA double helix, Watson and Crick suggested that "spontaneous mutation may be due to
6 from ideal, rigid helices allowed Watson and Crick to unravel the DNA structure, thereby elucidating
9 double helix symmetry revealed by Watson and Crick, classical X-ray diffraction patterns of DNA conta
10 structure of DNA was published by Watson and Crick, Sanger's group announced the first amino acid seq
12 ic range were originally proposed in 1965 by Crick and Wyman in a manuscript circulated among the pro
13 ractions were predicted over 50 years ago by Crick, and limited experimental data obtained in solutio
16 nal posthumously released article of Francis Crick, written with Christof Koch, the claustrum was sug
17 from inheriting 'older Watson' versus 'older Crick' DNA strand from the parental cell, strands that a
19 e clear consensus has emerged which supports Crick and Koch's primary interest in the claustrum: the
20 ch, by covalently binding the Watson and the Crick strands of DNA, impede replication and transcripti
24 The DNA 13-mer, BET66, self-assembles via Crick-Watson and noncanonical base pairs to form crystal
29 ions, a free 5'-flap (if present), a Watson-Crick base pair at the terminus of the reacting duplex,
30 s: (i) the loop region is closed by a Watson-Crick base pair between Psi1911 and A1919, which is pote
32 that whereas hydrogen bonds between a Watson-Crick base pair of template DNA and incoming NTP are cri
33 ue to its anti-conformation forming a Watson-Crick base pair with correct deoxycytidine 5'-triphospha
37 e base of the incoming dNTP to form a Watson-Crick pair with the template base but also distinguish t
40 zyl) that can alternatively pair in a Watson-Crick sense opposite cytosine (C) or as a Hoogsteen pair
41 tate, polbeta appears to allow only a Watson-Crick-like conformation for purine*pyrimidine base pairs
42 cale conformational change to adopt a Watson-Crick-like dG*dTTP base pair and a closed protein confor
43 nucleotides, with the exception of a Watson-Crick-like dGTP insertion opposite T, using BER DNA liga
44 rms three hydrogen bonds and adopts a Watson-Crick-like geometry rather than a wobble geometry, sugge
45 errors occur when mismatches adopt a Watson-Crick-like geometry through tautomerization and/or ioniz
48 ution, which selectively knocks out a Watson-Crick-type (G)N2H2...O2(T) hydrogen bond, significantly
52 nd classify modifications that affect Watson-Crick base pairing at three different levels of the Arab
54 tes mutagenic replication by allowing Watson-Crick-mode for O6MeG.T but not for O6MeG.C in the enzyme
55 ring DNA synthesis, base stacking and Watson-Crick (WC) hydrogen bonding increase the stability of na
60 tes in the transition pathway between Watson-Crick and HG base pairs for both naked B-DNA and A-RNA d
62 In the 12 solved structures, both Watson-Crick (anti-8-oxoG:anti-dCTP) and Hoogsteen (syn-8-oxoG:
63 n nonadjacent regions and employ both Watson-Crick and non-Watson-Crick base-pairing, screening of ca
64 tive to unpaired adenines in a bulge, Watson-Crick A-T base pairs in dsDNA only conferred ~130-fold p
66 Sequence specificity is provided by Watson-Crick base pairing between the DNA substrate and two oli
67 Self-assembly of these oligomers by Watson-Crick base pairing of the recognition sequences creates
68 s to the selection of correct dNTP by Watson-Crick base pairing, but it cannot explain how low-fideli
75 reveals that Fm7dG forms a canonical Watson-Crick base pair with dCTP, but metal ion coordination is
76 gh programmability based on canonical Watson-Crick base pairing, with crystal assembly in all three d
78 alternative base pairing to canonical Watson-Crick bps and are thought to play important biochemical
82 le-check" provided by the concomitant Watson-Crick and Hoogsteen base pairings involved in target rec
83 pocket with planar stacking contacts, Watson-Crick polar hydrogen bonds and van der Waals interaction
84 y are incapable of forming contiguous Watson-Crick base pairs with each other-has enforced a "homochi
91 conformational change of the designed Watson-Crick duplex region resulted in crystal packing differen
92 h p53, the current structures display Watson-Crick base pairs associated with direct or water-mediate
93 adenosine (epsilondA), which disrupts Watson-Crick base pairing, occurs via Poliota/Polzeta-, Rev1-,
96 individual base blocks, DSSR can draw Watson-Crick pairs as long blocks and highlight the minor-groov
98 NA) bound to site I in RecA exchanges Watson-Crick pairing with a sequence-matched ssDNA that was par
100 oparticle arrays and lattices exploit Watson-Crick base pairing of single-stranded DNA sequences as a
101 e design of these structures exploits Watson-Crick hybridization and strand exchange to stitch linear
104 (dG-N2) provides direct evidence for Watson-Crick (G)N2H2...O2(T) hydrogen bonding in the transient
106 obase pairs follow standard rules for Watson-Crick base pairing but have rearranged hydrogen bonding
107 eA suggests that despite its need for Watson-Crick hydrogen bonding, Poleta can stabilize the adduct
108 avored anti conformation required for Watson-Crick pairing is responsible for the reduced annealing r
109 tta recovers the 10 NN parameters for Watson-Crick stacked base pairs and 32 single-nucleotide dangli
110 (relative rate of base-extension for Watson-Crick versus mismatched base pairs), replications withou
112 oth guanines of the Pt-GG lesion form Watson-Crick base pairing with the primer terminus dC and the i
113 n, bases in the dsDNA attempt to form Watson-Crick bonds with the corresponding bases in the initiati
116 -lived and low-abundance species form Watson-Crick-like base pairs, their conformation could not be d
121 equence-specific excursions away from Watson-Crick base-pairing at CA and TA steps inside canonical d
123 biradicals return to the original GC Watson-Crick pairs, but up to 10% of the initially excited mole
124 n of individual guanine-cytosine (GC) Watson-Crick base pairs by ultrafast time-resolved UV/visible a
127 can originate from a mismatch having Watson-Crick geometry, and they suggest a common catalytic mech
128 In the canonical DNA double helix, Watson-Crick (WC) base pairs (bps) exist in dynamic equilibrium
129 the helix and forms a trans Hoogsteen-Watson-Crick base pair with a uridine, thus becoming an integra
131 argets (triplex association) and (ii) Watson-Crick complement-mediated displacement of the TFO and re
134 5'-end nucleotide need not engage in Watson-Crick (W/C) H-bonding but must fit the general shape of
138 h a thymine-thymine (T-T) mismatch in Watson-Crick base-pairs and the ligative disassembly of MB.Hg(2
139 at there is a significant decrease in Watson-Crick duplex stability of the heterogeneous backbone chi
140 r example, the bases participating in Watson-Crick pairing in the double helix, or the side chains co
141 d alignment software can also include Watson-Crick base pairs, but none adequately addresses the need
142 y noncovalent interactions, including Watson-Crick base pairing, Hoogsteen H-bonding, and pai-pai sta
144 known structured RNAs are folded into Watson-Crick (WC) base pairs, and sequence changes that preserv
145 ranched kissing-loop motif, involving Watson-Crick base pairing between the single-stranded regions o
146 ymerase incorporates ZTP opposite its Watson-Crick complement, imidazo[1,2-a]-1,3,5-triazin-4(8H)one
147 ween the complementary strand and its Watson-Crick pairing partners promotes the rapid unbinding of n
149 lability of tRNA decoding mechanisms: Watson-Crick, non-Watson-Crick or both types of interactions.
150 of the substrate-binding pocket mimic Watson-Crick interactions providing guanine base specificity, w
151 ough a conformational shift of native Watson-Crick pair to a wobble-like pattern with the formation o
153 that the Z:P pair mimics the natural Watson-Crick geometry in RNA in the first example of a crystal
155 odel of loop 6 that specifies all non-Watson-Crick base pair interactions, derived by isostericity-ba
157 ' ss is mainly recognized through non-Watson-Crick base pairing with the 5' ss and branch point.
158 MMR must be able to recognize non-Watson-Crick base pairs and excise the misincorporated nucleoti
159 isostericity of Watson-Crick and non-Watson-Crick base pairs, along with the collapsing (horizontall
162 and employ both Watson-Crick and non-Watson-Crick base-pairing, screening of candidate binder ensemb
164 Isostericity relations between non-Watson-Crick basepairs are used in scoring sequence variants.
167 r qualitative characterization of non-Watson-Crick double-helical structures; new structural paramete
168 hese residues in recognition of a non-Watson-Crick G(-1):A(73) bp, which had not been described previ
170 ysicochemical properties of these non-Watson-Crick G4 structures make them important targets for drug
171 g mode, and a novel mechanism for non-Watson-Crick incorporation by a low-fidelity DNA polymerase.
175 inucleotide is recognized through non-Watson-Crick pairing with the 5' splice site and the branch-poi
176 messenger RNA (pre-mRNA) through non-Watson-Crick pairing with the 5'SS and the branch adenosine, in
177 ry (Pol X:DNA:MgdGTP with dG:dGTP non-Watson-Crick pairing) forms, along with functional analyses, to
178 ocally influence the formation of non-Watson-Crick structures from otherwise complementary sequences.
180 ry structures displaying noncanonical Watson-Crick base pairing, have recently emerged as key control
181 y, could be replaced with noncovalent Watson-Crick hydrogen bonds without significantly affecting its
185 o different means to assemble DNA-NPs-Watson-Crick base-pairing interactions and depletion interactio
186 hat HCV IRES activity requires a 3-nt Watson-Crick base-pairing interaction between the apical loop o
187 ntly discovered transient flipping of Watson-Crick (WC) pairs into Hoogsteen (HG) pairs (HG breathing
188 an alignment based on isostericity of Watson-Crick and non-Watson-Crick base pairs, along with the co
190 hin the active site in the absence of Watson-Crick base pairing with template and mapped movements of
191 nanoscale through the specificity of Watson-Crick base pairing, allowing both complex self-assembled
195 DNA stretching shows that breaking of Watson-Crick bonds is not necessary for the existence of the pl
196 onents and different architectures of Watson-Crick complementary single-stranded DNA ("sticky end") l
197 re still significantly exceed that of Watson-Crick G.C base pairs, such that DNA i-motif conformation
198 8, and GN2, pointing to an absence of Watson-Crick hydrogen bonding, yet the presence of some type of
200 provide insight into the stability of Watson-Crick pairs and the role of specific functional groups i
201 ic forms that enable the formation of Watson-Crick-like (WC-like) mispairs, which have been proposed
202 anwhile, nucleic acid probes based on Watson-Crick base-pairing rules are also being widely applied i
204 used to probe RNA structure report on Watson-Crick pairing, but tertiary structure parameters such as
206 a Z:P pair with a standard "edge on" Watson-Crick geometry, but joined by rearranged hydrogen bond d
207 ne and 6-amino-5-nitropyridin-2-one), Watson-Crick complements from an artificially expanded genetic
208 low-fidelity DNA polymerases overcome Watson-Crick base pairing to catalyze non-Watson-Crick dNTP inc
210 brium with short-lived, low-populated Watson-Crick-like mispairs that are stabilized by rare enolic o
212 Although m(6)A does not preclude Watson-Crick base pairing, the N(6)-methyl group alters the sta
215 e pair, the first structure of pseudo-Watson-Crick O6MeG.T formed in the active site of a DNA polymer
216 ses with high 3'-5' regioselectivity, Watson-Crick base pairing between the RNA monomers and the temp
218 vage site (e.g. T^G), while retaining Watson-Crick sequence generality beyond those nucleotides along
222 aA base is intrahelical, in a reverse Watson-Crick orientation, and forms a weak base pair with a thy
224 sponsible for the formation of robust Watson-Crick H-bonded cyclic tetramers, and nucleation-growth c
225 e vs. contiguous pairs) and sequence (Watson-Crick vs. G:U pairs) preferences for human and mouse miR
227 y the need to forward-design specific Watson-Crick base pairing manually for any given target structu
228 oscale architectures through specific Watson-Crick base-pairing, molecular plasticity, and intermolec
229 n der Waals interactions and specific Watson-Crick polar hydrogen bonds to ensure high enzymatic spec
230 the ability of 8-oxoG to form stable Watson-Crick base pairs with deoxycytidine (8-oxoG:dC) and Hoog
231 arrangements, but also in a standard Watson-Crick base pair, adopted the same C3'-endo ribose confor
232 the 5'-end of the sequence by an A.T Watson-Crick base pair and a potential G.A noncanonical base pa
234 istent with stabilization by tertiary Watson-Crick base pairing found in the folded Diels-Alderase st
236 nly DNA components, establishing that Watson-Crick base-pairing interactions alone suffice for comple
239 able properties, the linearity of the Watson-Crick B-form duplex imposes limitations on 3D crystal de
240 pg uses an aromatic wedge to open the Watson-Crick base pair and everts the lesion into its active si
243 specificity and predictability of the Watson-Crick base pairing make DNA an excellent building materi
244 amma-HMHP-dA is expected to block the Watson-Crick base pairing of the adducted adenine with thymine,
246 by Kool and colleagues challenged the Watson-Crick dogma that hydrogen bonds between complementary ba
248 f protein-adenine interactions in the Watson-Crick edge of adenine and shows that all of adenine's ed
249 oordinating a Mg(2+) ion bound at the Watson-Crick edge of residue C7, or the N3 position of residue
250 pted the syn conformation placing the Watson-Crick edge of the modified dG into the major groove.
252 difications, e.g., methylation of the Watson-Crick face of unpaired adenine and cytosine residues by
253 tically preferred syn geometry on the Watson-Crick face to the higher-energy anti conformation, posit
256 deleterious alkylation damage to the Watson-Crick faces of nucleobases predominantly occurs when DNA
258 ill significantly exceed those of the Watson-Crick G*C and neutral C*C base pairs, suggesting that C(
259 U(34).G(3) wobble base pair is in the Watson-Crick geometry, requiring unusual hydrogen bonding to G
262 ed with almost no perturbation of the Watson-Crick hydrogen-bond network and induces bend and unwindi
263 ir tension due to the transfer of the Watson-Crick pairing of the complementary strand bases from the
265 MBD4 specifically recognizes the Watson-Crick polar edge of thymine or 5hmU via the O2, N3 and O
267 pound that covalently attaches to the Watson-Crick-Franklin face of several nucleobases, addresses th
269 tional nucleobases could expose their Watson-Crick and/or Hoogsteen faces for recognition in the majo
272 t quantum chemical estimates of their Watson-Crick interaction energy, pi-pi stacking energies, as we
273 how that the L-nucleotide forms three Watson-Crick hydrogen bonds with the templating nucleotide dG a
274 nces would uniquely associate through Watson-Crick assembly to form closed-cycle or linear arrays of
275 e can spontaneously associate through Watson-Crick canonical H-bonding and pi-pi stacking to form sta
277 tation of the purine base relative to Watson-Crick (WC) base pairing within DNA duplexes, creating al
278 de an alternative pairing geometry to Watson-Crick (WC) bps and can play unique functional roles in d
280 *C proton-bound dimers as compared to Watson-Crick G*C base pairs are the major forces responsible fo
284 e geometry of canonical G.C and A.T/U Watson-Crick base pairs to discriminate against DNA and RNA mis
285 cking leading to disrupted A752-U2609 Watson-Crick (WC) interactions as well as hydrogen bonding betw
287 novel bio-MOF featuring unobstructed Watson-Crick faces of adenine (Ade) pointing towards the MOF ca
289 e gene in cell-free translation using Watson-Crick base pairing between the mRNA and a complementary
290 ll adapted to accommodate the 5'T via Watson-Crick base pairing, in accord with a proposed role for P
292 two nucleic acid elements coupled via Watson-Crick base pairing: (i) an aptamer sequence, which serve
293 e DNAzyme binds the substrate DNA via Watson-Crick bonding and the 3'-end binds through formation of
296 systems such as nucleic acids, where Watson-Crick H-bonds are fully paired in double-helical structu
297 lassical intercalation motif in which Watson-Crick base pairing is intact at the lesion site and (2)
298 ions involve cognate recognition with Watson-Crick pairs and 59 involve near-cognate recognition pair
299 and formed a Hoogsteen base pair with Watson-Crick-like geometry, highlighting the dual-coding potent