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1 colour channel opposite of their design (Cy3/Cy5).
2 idoamine) dendrimer nanoparticles (Dendrimer-Cy5).
3 t tissues using a fluorescent peptide (RK-10-Cy5).
4 BLM, and BLM disaccharide to the cyanine dye Cy5**.
5 onjugated with one of the FRET pair, Cy3 and Cy5.
6 accharide was doubly labeled with biotin and Cy5.
7 re labeled with fluorophores such as Cy3 and Cy5.
8 es commonly used in DNA microarrays, Cy3 and Cy5.
9 e quantification of cell-extracted dendrimer-Cy5.
10 deceased MM patients were stained with LLP2A-Cy5.
11 es was more than tripled compared to FAM and Cy5.
12 both nuclear and optical in vivo imaging of Cy5-(111)In -DTPA-Tyr(3)-octreotate were performed in NE
13 dies revealed similar tumor uptake values of Cy5-(111)In-DTPA-Tyr(3)-octreotate and (111)In -DTPA-Tyr
15 efficiencies between the juxtaposed Cy3 and Cy5 5'-end labeled viral DNA ends in the synaptic comple
17 beacon (rMB), thus bringing Cy5 (donor) and Cy5.5 (acceptor) into close proximity to allow fluoresce
18 nt normal tissue, we developed a chlorotoxin:Cy5.5 (CTX:Cy5.5) bioconjugate that emits near-IR fluore
19 that had been site specifically labeled with Cy5.5 (scVEGF/Cy) or inactivated scVEGF/Cy (inVEGF/Cy) a
21 optical probes based on Igs conjugated with Cy5.5 and Cy7 and demonstrate in animal models that thes
22 ologic blocker of MMP-2 and induction of CTX:Cy5.5 binding in MCF-7 cells following transfection with
23 e-2 (MMP-2) as evidenced by reduction of CTX:Cy5.5 binding in vitro and in vivo by a pharmacologic bl
25 of the magnetofluorescent nanoparticle CLIO-Cy5.5 by macrophages in infarcted myocardium was studied
30 or magnetic resonance imaging, modified with Cy5.5 dye (for near-IR fluorescence optical imaging), an
33 als (86Y or 111In) and the near-infrared dye Cy5.5 for dual modality PET (or SPECT) and fluorescence
39 y available NIR fluorophores IRDye800-CW and Cy5.5 in vitro for immunocytometry, histopathology and i
40 The reporter duplexes included donor NIR Cy5.5 indodicarbocyanine fluorochrome linked to the 3' e
41 When they are in dimers, fluorescence of Cy5.5 is either nearly completely quenched by the BHQ3 o
43 ging agents, we site-specifically conjugated Cy5.5 or (64)Cu-1,4,7,10-tetra-azacyclododecane-N,N',N''
44 pancreata of mice injected with the MN-Ex10-Cy5.5 probe compared with control animals injected with
46 validation confirmed specific binding of Epo-Cy5.5 to the tumor cells, and this binding correlated wi
48 In addition, the near-infrared (NIR) dye Cy5.5 was coupled to the polymer providing live-animal i
51 betic and diabetic NOD mice injected with MN-Cy5.5 was not significantly changed, reflecting the nons
52 for Survival Motor Neuron (SMN1) target, and Cy5.5 was the red channel acceptor for the glucuronidase
54 issue, we developed a chlorotoxin:Cy5.5 (CTX:Cy5.5) bioconjugate that emits near-IR fluorescent signa
57 ions by the use of a mixture of Cyanine 5.5 (Cy5.5) fluorophore- and BHQ3 quencher-conjugated endogen
58 Cy5.5, conjugated dibenzylcyclooctyne (DBCO-Cy5.5) via bioorthogonal click chemistry, resulting in C
61 odality nanoparticles using glycol chitosan, Cy5.5, and superparamagnetic iron oxide nanoparticles (S
62 with near infrared fluorescence (NIRF) dye, Cy5.5, conjugated dibenzylcyclooctyne (DBCO-Cy5.5) via b
63 etic NOD mice after the injection of MN-Ex10-Cy5.5, indicating the decrease of probe accumulation in
64 fer (FRET) both in the case of Cy5.5-Cy7 and Cy5.5-800CW pairs of fluorochromes, which was sensitive
65 estar (formed by descanned fluorescence from Cy5.5-conjugated dextran in brain microvessels) with ada
66 e highly correlated with the NIRF signals of Cy5.5-CTLs at targeted tumor tissues in the early stage.
71 mmune-deficient mice, intravenously injected Cy5.5-CTLs were clearly observed at targeted solid tumor
74 e energy transfer (FRET) both in the case of Cy5.5-Cy7 and Cy5.5-800CW pairs of fluorochromes, which
75 gher FRET efficiency observed in the case of Cy5.5-Cy7 pair was due to a larger overlap between the O
77 were able to visualize in vivo binding of a Cy5.5-labeled peptide specific for EGFR to the cell surf
78 n myocardial remodeling using a radiolabeled Cy5.5-RGD imaging peptide (CRIP) that targets myofibrobl
79 5-superparamagnetic iron oxide nanoparticle (Cy5.5-SPION) labeling and fluorescent microscopy, we dem
88 identify the compound [(68)Ga]Ga-NODAGA-Lys(Cy5**)-AEEAc-[Me-Arg(8),Tle(12)]-NT(7-13) as the one wit
90 wed lower maximal MEF factors of 10-fold for Cy5 and 2.5-fold for Cy3, because of the smaller amount
91 emained at a constant maximum of 28-fold for Cy5 and 4-fold for Cy3, compared to avidin-coated glass
92 tobleaching compared to organic dyes such as Cy5 and Alexa 647 in vitro, and 5-fold more photons comp
93 en the two fluorophores used in aCGH-usually Cy5 and Cy3-can be observed as a bias within the intensi
95 Utilizing single-molecule fluorescence on Cy5 and Cy5B, transient-absorption spectroscopy, and DFT
96 ition, the binding curves obtained with 8A11-Cy5 and DCP-UO22+ species changed from sigmoidal to hype
97 ingle injection of ACPPD dually labeled with Cy5 and gadolinium chelates enabled preoperative whole-b
98 nce energy transfer (FRET) between 605QD and Cy5 and Iowa Black RQ, we develop a single-QD-based apta
99 re coincubated with the optical analog LLP2A-Cy5 and mouse B220, CD4, Gr1, and Mac1 antibodies and an
101 rophore (Cy5), and the FRET-coupling between Cy5 and the redox center (copper) was used to study ET t
102 conjugation with a fluorescent cyanine dye (Cy5) and biotin, resulting in binding K(i) values of 17
103 resonance energy transfer to a reporter dye (Cy5) and that can benefit from the light harvesting prop
104 In one approach, multiple organic dyes (Cy5) and Trolox molecules are randomly distributed on de
105 es were labeled with an organic fluorophore (Cy5), and the FRET-coupling between Cy5 and the redox ce
106 rescent molecular rotor dyes, including Cy3, Cy5, and Alexa Fluor 555, dissolved in micron-sized aque
108 r dye pairs (TMR-ATTO647N, Cy3-ATTO647N, TMR-Cy5, and Cy3-Cy5), we find that this phenomenon depends
109 rization and back-isomerization processes of Cy5, and Cy5-nucleobase interactions are shown to slow d
110 imately 540 nm), Cy3 (approximately 570 nm), Cy5 (approximately 670 nm), IRDye 680 (approximately 700
111 5(SO(3))-mas(3), EuK-(Ar)Cy5-mas(3), and EuK-Cy5(Ar)-mas(3); the Cy5 dye acts as a functional backbon
112 The indodicarbocyanine fluorophores Cy3 and Cy5 are extensively used as donor-acceptor pairs in fluo
114 he data show that Cy-ncAAs (based on Cy3 and Cy5) are tolerated by the eukaryotic ribosome in cell-fr
116 ble cell-penetrating peptides, which contain Cy5 as far red fluorescent donor and Cy7 as near-infrare
117 cceptor pairs, fluorescein/rhodamine and Cy3/Cy5, as a function of peptide concentration and donor-to
118 ent conformation, from that of either Cy3 or Cy5 attached by 3-atom tethers, with the long axes of th
119 of the indocarbocyanine fluorophores Cy3 and Cy5 attached to DNA via three-carbon atom tethers, showi
122 nzymatic oxygen-scavenging system eliminates Cy5 blinking, dramatically reduces photobleaching and im
124 e fluorescent signal of the carbocyanine dye Cy5 by using an engineered virus as a scaffold to attach
126 d be discriminated with equal confidence for Cy5 channel and reduced levels of confidence (>68%) for
127 Here we show that these rigidly inserted Cy3/Cy5 chromophores also exhibit two additional useful prop
128 e 8A11-Cy5 conjugate; incubation of the 8A11-Cy5 conjugate with saturating concentrations of DCP-UO22
129 l of protein G bind to each mole of the 8A11-Cy5 conjugate, (ii) binding of the first equivalent of D
130 fect on the binding of protein G to the 8A11-Cy5 conjugate; incubation of the 8A11-Cy5 conjugate with
134 kness of about 9mum while it was 40ng/mL for Cy5-conjugated Rabbit Anti-Mouse IgG which is 2.5x10(5)
136 tion of an Escherichia coli 50S subunit (50S(Cy5)) containing a Cy5-labeled L11 N-terminal domain (L1
139 ommonly used fluorophore indocarbocyanine-5 (Cy5) covalently attached to the 5'-terminus of double-he
149 the Cy5-DNA-Ag particle as compared to free Cy5-DNA resulted in an increased contribution of Cy5-DNA
153 DNA resulted in an increased contribution of Cy5-DNA-Ag to the correlation function of the mixture.
155 On this account, the adsorption behaviour of Cy5-dNTPs on a variety of surface coatings was studied b
156 mer-template DNA constructs labeled with Cy3/Cy5 donor-acceptor Forster resonance energy transfer (FR
157 everse molecular beacon (rMB), thus bringing Cy5 (donor) and Cy5.5 (acceptor) into close proximity to
158 , and 3,3'-Diethylthiadicarbocyanine iodide (CY5)-doped polymer as the reconfigurable gain media.
159 ave now applied single-molecule FRET to Cy3, Cy5 double-labeled LacI-DNA loops diffusing freely in so
160 l (NBA) or Trolox to the cyanine fluorophore Cy5 dramatically enhanced fluorophore photostability wit
161 tudy, the hybrid labeled somatostatin analog Cy5-DTPA-Tyr(3)-octreotate (DTPA is diethylene triamine
163 ion constant value was 387.7 +/- 97.9 nM for Cy5-DTPA-Tyr(3)-octreotate, whereas it was 120.5 +/- 18.
166 ystals by attaching either Cy3 dye (pink) or Cy5 dye (blue-green) to the components of the crystal, y
167 -(Ar)Cy5-mas(3), and EuK-Cy5(Ar)-mas(3); the Cy5 dye acts as a functional backbone between the EuK ta
169 ng the fluorescence of a covalently attached Cy5 dye label whose fluorescence is (partly) quenched by
172 hiometric amounts, and in a second approach, Cy5 dyes are covalently linked to Trolox in a precise 1:
174 resonance energy transfer (smFRET) between (Cy5)EF-G and (Cy3)tRNALys, we studied the translational
175 nal light-sheet fluorescence microscopy with Cy5-Fab-PAS200 confirmed better tracer extravasation in
177 ophysical properties of dye-conjugated FDNs (Cy5-FDNs and Cy3-FDNs) were characterized using single-m
181 nally, we observed specific quenching of the Cy5 fluorescent dye when the FeS cluster of a bound heli
183 licase is positioned in close proximity to a Cy5 fluorophore incorporated into the DNA molecule.
185 r brightness compared to the previously used Cy5 fluorophore, a 45% increase in the anisotropy range
186 ons from rat liver as a source of ASGP-R and Cy5 fluorophore-labeled triGalNAc synthetic ligand as a
188 Spontaneous membrane partitioning of Cy3 and Cy5 fluorophores captured in these simulations proceeds
189 measurements probe the distance between Cy3/Cy5 fluorophores that label the ends of a short (15-nt)
191 ophilic 3'-phosphorothioate probe carrying a Cy5 FRET acceptor, and an electrophilic probe containing
192 the three stems of the DNAzyme with the Cy3/Cy5 FRET pair two stems at a time in order to gain deepe
198 y transfer efficiency, with unlinked QDs and Cy5 hydrazide producing nearly zero background signal in
199 nd to bleach significantly less than FAM and Cy5; i.e., the final fluorescence of Atto dyes was more
200 med by measuring the ratio of bound and free Cy5-insulin and FITC-glucagon in the presence of their r
201 laser was pulsed at 73 Hz and used to excite Cy5-insulin, while a vertically polarized 488 nm laser p
205 isible fluorophores (e.g., fluorescein, Cy3, Cy5), it should find broad applicability in FRET assays
208 f concept, we demonstrate the interaction of Cy5 labeled IgG and Alexa633 labeled anti-IgG using a si
211 synuclein are then incubated with a red dye (Cy5)-labeled variant of alpha-synuclein A91C, and EtOH (
213 the sliding via one-dimensional diffusion of Cy5-labeled adenovirus protease on DNA in the presence o
214 d TMR-labeled alpha-synuclein and aggregated Cy5-labeled alpha-synuclein from the solution are quanti
215 ing an increase in fluorescent intensity for Cy5-labeled analytes measured with a confocal microarray
216 strogen receptor, at the same time causing a Cy5-labeled coactivator to be recruited to the estrogen
217 50-nm-diameter single silver particle, and a Cy5-labeled complementary single-stranded oligonucleotid
218 Following systemic administration of the Cy5-labeled dendrimer (D-Cy5), we demonstrate dendrimer
222 ocalization experiments were performed using Cy5-labeled forked DNA and Alexa 555-labeled gp59 in the
224 luorescent quenching graphene oxide (GO) and Cy5-labeled G8 aptamer were used in this study to develo
226 by electroosmotic flow and mixed online with Cy5-labeled insulin, fluorescein isothiocyanate (FITC)-l
227 erve the sequence-independent interaction of Cy5-labeled interferon-inducible protein 16 with DNA and
228 hia coli 50S subunit (50S(Cy5)) containing a Cy5-labeled L11 N-terminal domain (L11-NTD) within the G
229 l freedom, and dwell time distributions of a Cy5-labeled OTD (L1Cy5-7OTD) as it interacted with sever
230 t all the click clusters efficiently deliver Cy5-labeled pDNA into HeLa and H9c2 (2-1) cells, and com
231 e-molecule FRET (smFRET) measurements on Cy3/Cy5-labeled primer-template (p/t) DNA constructs in the
238 1 stalk of the large ribosomal subunit and a Cy5-labeled tRNA(Lys) in the ribosomal peptidyl-tRNA-bin
241 ed from the same source was used for Cy3 and Cy5 labeling and hybridized to the same array, signal in
242 and fluorescence imaging, (99m)Tc-EuK-(SO(3))Cy5-mas(3) had the most promising properties (e.g., half
243 e moiety adjacent to EuK ((99m)Tc-EuK-(SO(3))Cy5-mas(3)) yielded the most promising tracer candidate
244 ))Cy5-mas(3), EuK-Cy5(SO(3))-mas(3), EuK-(Ar)Cy5-mas(3), and EuK-Cy5(Ar)-mas(3); the Cy5 dye acts as
245 synthesized: glutamic acid-urea-lysine (EuK)-Cy5-mas(3), EuK-(SO(3))Cy5-mas(3), EuK-Cy5(SO(3))-mas(3)
246 cid-urea-lysine (EuK)-Cy5-mas(3), EuK-(SO(3))Cy5-mas(3), EuK-Cy5(SO(3))-mas(3), EuK-(Ar)Cy5-mas(3), a
250 and back-isomerization processes of Cy5, and Cy5-nucleobase interactions are shown to slow down these
251 llography to analyze the location of Cy3 and Cy5 on dsRNA, using complexes of an RNA stem-loop bound
252 her show that the alterations of the FBKs of Cy5 on probe hybridization can be used to differentiate
253 n of 8A11 with amine-reactive derivatives of Cy5 or Alexa 488 altered the binding curves obtained wit
255 egion (Cy2) and 8000-fold in the red region (Cy5) over conventional state-of-the-art image acquisitio
261 engineered virus as a scaffold to attach >40 Cy5 reporter molecules at fixed locations on the viral c
262 trate that organized spatial distribution of Cy5 reporter molecules on the capsid obviates this commo
267 However, no change was observed in the Cy3/Cy5 signal intensity ratio between continuously mixed an
269 (EuK)-Cy5-mas(3), EuK-(SO(3))Cy5-mas(3), EuK-Cy5(SO(3))-mas(3), EuK-(Ar)Cy5-mas(3), and EuK-Cy5(Ar)-m
271 een phycoerythrin-biotin (PhycoE-Biotin) and Cy5-streptavidin trapped in the two proteoliposome popul
274 ns show strong position-dependent effects of Cy5-tagging on the structure and natural dynamics of mem
275 fficiency of energy transfer between Cy3 and Cy5, that are attached to nucleic acids in this way, wil
276 e at the excitation wavelength of cyanine-5 (Cy5), thus providing an increase in fluorescent intensit
278 ed with the cyanine dye fluorophores Cy3 and Cy5 to quantify the melting/rebinding reaction by fluore
279 eins has been examined by covalently linking Cy5 to single- and multipass transmembrane helical prote
281 grams of the logarithms of the ratios of the Cy5 to the reference fluorophore fluorescence can be use
282 oxin B subunit-Alexa 647 and streptavidin-PE/Cy5, to membranes containing different amounts of ligand
284 d to single self-healing dye systems such as Cy5-Trolox, and as a proof-of-principle demonstration, w
285 uration of the three-way-junction alters the Cy5-upG or Cy5-upT interactions, therefore resulting in
286 the three-way-junction alters the Cy5-upG or Cy5-upT interactions, therefore resulting in a measurabl
287 rescence emission of the covalently attached Cy5 was largely quenched by FRET ('off'-state), whereas
288 ength and emission wavelength of Cyanines 5 (Cy5), was used to amplify the fluorescence signal intens
289 tation wavelength and emission wavelength of Cy5, was used to amplify the fluorescence signal intensi
290 ministration of the Cy5-labeled dendrimer (D-Cy5), we demonstrate dendrimer uptake in cells involved
291 TMR-ATTO647N, Cy3-ATTO647N, TMR-Cy5, and Cy3-Cy5), we find that this phenomenon depends on the nature
293 at the model drug (Cy3) and polymer bound to Cy5 were colocalized at an early time point before the m
295 mitting at the same wavelength as cyanine 5, Cy5) were found to bleach significantly less than FAM an
296 fibres labelled with different dyes (Cy3 and Cy5) were mixed, and the distribution of dyes inserting
297 ckbone was labeled with acceptor fluorophore Cy5, while donor fluorophores (Cy3 or EPI) were attached
298 r, the manner of interaction of both Cy3 and Cy5 with the terminus of the dsRNA is significantly diff
299 ially for far red emitting fluorophores like Cy5, without significantly altering current microarray p
300 ased hybrid tracer, PSMA-I&F (DOTAGA-k(Sulfo-Cy5)-y-nal-k-Sub-KuE), has been developed and evaluated.