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1 ining, RNA degradation, and oligonucleosomal DNA cleavage).
2 increase levels of topoisomerase II-mediated DNA cleavage).
3 mer competent for non-specific double-strand DNA cleavage.
4 recombination intermediates may drive biased DNA cleavage.
5 eins use a conserved catalytic mechanism for DNA cleavage.
6 exerts a conformational control domain over DNA cleavage.
7 e, the most therapeutically valuable type of DNA cleavage.
8 form a cruciform structure that facilitates DNA cleavage.
9 dation of mutant mtDNA through site-specific DNA cleavage.
10 ide RNAs (gRNAs) to direct sequence-specific DNA cleavage.
11 and is necessary for efficient Ref-mediated DNA cleavage.
12 SPDL motifs position the strand for accurate DNA cleavage.
13 tional mechanisms must restrict RAG-mediated DNA cleavage.
14 C2c1 depends on both crRNA and tracrRNA for DNA cleavage.
15 functional protein capable of site-specific DNA cleavage.
16 full-length Cas9 and catalyzes site-specific DNA cleavage.
17 died in vitro, where light activation caused DNA cleavage.
18 o PAM-mediated stimulation of Cas9-catalysed DNA cleavage.
19 A5 was used to assess sites of double-strand DNA cleavage.
20 ormation of normally transient double strand DNA cleavage.
21 may employ a unique catalytic mechanism for DNA cleavage.
22 erse transcription and conduct second-strand DNA cleavage.
23 he iron-sulfur cluster, but had no effect on DNA cleavage.
24 e responsive to targeted HPV genome-specific DNA cleavage.
25 sess a sequence-specific ATPase activity for DNA cleavage.
26 condary to salicylate-mediated inhibition of DNA cleavage.
27 oligonucleotides attached to Rec12 following DNA cleavage.
28 ate metal ions of different atomic radii for DNA cleavage.
29 level of homolog pairing precedes programmed DNA cleavage.
30 shown to facilitate RNA-guided site-specific DNA cleavage.
31 ach case for inhibition of SauCas9-catalyzed DNA cleavage.
32 as9 is the limiting factor for Cas9-mediated DNA cleavage.
33 slocation to the nucleus, where it initiates DNA cleavage.
34 ly 360 ns in H(2)O) which is responsible for DNA cleavage.
35 stable ~9 bp R-loop that could not activate DNA cleavage.
36 recombination involving transposase-mediated DNA cleavage.
37 turmeric enhanced topoisomerase II-mediated DNA cleavage.
38 et sequence recognition and protein-mediated DNA cleavage.
39 tosine base at the -4 position to facilitate DNA cleavage.
40 acid, and feruloylmethane, had no effect on DNA cleavage.
41 uring long-range communication and following DNA cleavage.
42 or DNA binding and a secondary selection for DNA cleavage.
43 hat could otherwise result from RAG-mediated DNA cleavage.
44 this function is separable from its role in DNA cleavage.
45 s can catalyse Z-site-specific double-strand DNA cleavage.
46 ssed SOS induction as a readout of increased DNA cleavage.
47 stood but is associated with enzyme-mediated DNA cleavage.
48 erases has a more stringent requirement than DNA cleavage.
49 laining some ensemble biochemical results on DNA cleavage.
50 A:tracrRNA-FnoCas9 machinery can also direct DNA cleavage.
51 n for GTP hydrolysis-dependent activation of DNA cleavage.
52 tation indicates a low level of nonselective DNA cleavage.
53 to be a critical component of second-strand DNA cleavage.
54 es appropriately positioned and oriented for DNA cleavage.
55 a stable product state after double-stranded-DNA cleavage.
56 transition mutations without double-stranded DNA cleavage.
57 ashion primes MjAgo for subsequent rounds of DNA cleavage.
58 e2, and internal protein blocks also trigger DNA cleavage.
59 ble tethering of the nuclease domains during DNA cleavage.
60 topoII poisons that enhance enzyme-mediated DNA cleavage, a mechanism that is linked to the developm
63 d 6'-deoxy-BLM Z and the evaluation of their DNA cleavage activities as a measurement for their poten
64 n, ferulic acid, and feruloylmethane) on the DNA cleavage activities of human topoisomerase IIalpha a
65 hen activated and possesses both accelerated DNA cleavage activity and expanded DNA sequence specific
66 NA binding protein Cas9 that have lost their DNA cleavage activity could be used to recruit transcrip
68 Purified Sco5333 and Tbis1 displayed weak DNA cleavage activity in the presence of Mg(2+), Mn(2+)
69 is study provides a structural basis for the DNA cleavage activity of 1, will guide the design of syn
70 otection of the host genome against damaging DNA cleavage activity of activated SgrAI.IMPORTANCE This
71 haride moiety plays an important role in the DNA cleavage activity of BLMs and ZBMs, (ii) the ZBM dis
72 nsects, which leverage the sequence-targeted DNA cleavage activity of CRISPR-Cas9 and endogenous homo
73 previously unappreciated regulatory roles of DNA cleavage activity on Cas9's conformation and suggest
74 munication has been suggested to control its DNA cleavage activity through flexibility of the catalyt
75 mbly of synaptic complexes and regulation of DNA cleavage activity via trans protein-protein interact
78 oreover, we find that CdCas9 exhibits robust DNA cleavage activity with the optimal 22-nucleotide len
79 g tool selects target sites, avoids spurious DNA cleavage activity, and controls DNA recombination ef
85 ly broad 5'-NNG-3' PAM compatibility, robust DNA-cleavage activity and minimal off-target activity.
86 ercial electrode assembly and treated in the DNA cleavage agent formed by the Fenton type reaction.
88 guide the design of synthetic DNA-activated DNA cleavage agents, and underscores the utility of natu
89 , are demonstrated to be much less effective DNA cleavage agents, thereby providing an explanation fo
94 e show the bulge and nexus are necessary for DNA cleavage and demonstrate that the nexus and hairpins
96 resistance to cleavage enzymes may occur if DNA cleavage and error prone repair does not render the
97 ion requires the enzyme to precisely control DNA cleavage and gate opening coupled with ATP hydrolysi
98 , Cas12c (C2c3)- and Cas12d (CasY)-catalyzed DNA cleavage and genome editing activities have not been
99 that Type III RM enzymes can dissociate upon DNA cleavage and go on to cleave further DNA molecules (
100 cleases that use dual-RNAs for site-specific DNA cleavage and highlights the potential to exploit the
101 leavage at high drug concentrations, whereas DNA cleavage and inhibition of religation occurs at low
104 plied in host organisms, they enable precise DNA cleavage and ligation without the gain or loss of nu
105 Previous studies have focused on examining DNA cleavage and ligation; however, the dynamic opening
106 leave and package viral DNA, suggesting that DNA cleavage and packaging are inextricably linked.
108 minase subunit), A374V in UL32 (required for DNA cleavage and packaging), V296I in UL42 (encoding the
109 yrB subunits, that catalyzes double-stranded DNA cleavage and passage of a second double-stranded DNA
110 uclease targets the submicron locus, causing DNA cleavage and recruiting repair factors such as GFP-5
111 s that must coordinate fuel consumption with DNA cleavage and religation and with numerous conformati
113 equired to produce maximal quinolone-induced DNA cleavage and restricted the divalent metal ions that
117 mice brain by combining CRISPR-Cas9-mediated DNA cleavage and the efficient delivery of donor templat
118 The Cu(GTSCHCl) complex caused distinct DNA cleavage and Topo IIalpha inhibition unlike that for
119 RAG recombinase with appropriately regulated DNA cleavage and transposition activities are not unders
120 as concluded that the observed double-strand DNA cleavage and very low sequence selectivity by shishi
121 apoptosis confirmed by nuclear condensation, DNA cleavage, and accumulation of S phase cell arrest.
126 of RAG1, which contains the active site for DNA cleavage, and RAG2, an accessory factor whose intera
127 arly stage of transpososome assembly, before DNA cleavage, and that mutations affecting immunity have
130 olecules were evaluated in the Top1-mediated DNA cleavage assay and in the National Cancer Institute'
132 In vivo phage plaque assays and in vitro DNA cleavage assays show that AcrIIC2(Nme) mediates its
136 Free DNA binding suppresses Top1-catalyzed DNA cleavage at high drug concentrations, whereas DNA cl
138 ce for DNA, enzyme and drug contributions to DNA cleavage at the gate, suggest a mechanism for DNA di
139 to exchange DNA strands after double-strand DNA cleavage at the two recombining att sites, and that
140 te-specific RAG endonuclease, which mediates DNA cleavage at two recombining gene segments and their
142 up to 100 degrees C in vitro, which enables DNA cleavage beyond the 44 degrees C limit of Streptococ
143 portant not only for regulating RAG-mediated DNA cleavage but also for the efficiency of RAG recruitm
145 evidence for looping being a requirement for DNA cleavage, but instead support a diffusive sliding of
146 re recognized as promising intermediates for DNA cleavage, but their formation has thus far been limi
147 ed improvements in the precision of targeted DNA cleavage, but they often restrict the range of targe
149 provide mechanistic insights into RNA-guided DNA cleavage by Cpf1 and establish a framework for ratio
152 ge reactions; DNA 13 underwent double-strand DNA cleavage by independent single-strand cleavages at a
153 es the inhibitory effect of RAD51 on 3'-flap DNA cleavage by MUS81-EME1 through its RAD51 filament di
157 oint to an unusual mechanism of PT-dependent DNA cleavage by restriction enzymes in the face of parti
159 create guide RNAs that direct site-specific DNA cleavage by the Cas9 endonuclease in cultured cells.
168 te positioned at the active site for optimal DNA cleavage by the tyrosine hydroxyl nucleophile to fac
171 e corresponding Arg-321 mutation showed that DNA cleavage can still take place in the absence of this
172 es were compared with BLM and deglycoBLM for DNA cleavage, cancer cell uptake, and cytotoxic activity
173 reaks (DSBs) mediated by Topoisomerase 2beta-DNA cleavage complex (TOP2betacc) intermediates are requ
174 ) affect the binding of the drug to the Top1-DNA cleavage complex and thus modulate the drug's Top1 i
175 inolone binding site in the topoisomerase IV-DNA cleavage complex but does not form significant conta
176 ch as camptothecin (CPT), stabilize the Top1-DNA cleavage complex in a DNA sequence-dependent manner.
177 s able to stabilize the transient DNA gyrase-DNA cleavage complex, a very efficient mode of action sh
179 icancer activity by reversibly trapping Top1-DNA cleavage complexes (Top1cc's) and inducing replicati
181 ulation of pathogenic topoisomerase-1 (Top1)-DNA cleavage complexes (Top1ccs) in murine models of ata
182 erations cause potentially irreversible Top2.DNA cleavage complexes (Top2cc), leading to Top2-linked
184 bacterial topoisomerase inhibitors, can trap DNA cleavage complexes with double- or single-stranded c
185 cterial thiophenes stabilize gyrase-mediated DNA-cleavage complexes in either one DNA strand or both
186 erials that target DNA gyrase by stabilizing DNA-cleavage complexes, but their clinical utility has b
187 I requires K(+) ions to prevent non-specific DNA cleavage, conditions which affect the translocation
188 nt antiproliferative effect of Cas9-mediated DNA cleavage confounds such measurement of genetic depen
189 rmined the 2.9-A-resolution structure of the DNA cleavage core of human topoisomerase IIalpha (TOP2A)
190 ha and -beta occupancy and etoposide-induced DNA cleavage data suggest factors other than local topoi
191 We introduce on-chip lysis and non-enzymatic DNA cleavage directly followed by a purifying step for r
192 er pylori (R.HpyAXII) and demonstrated their DNA cleavage, DNA glycosylase and AP lyase activities in
195 embly of zinc finger DNA-binding domain to a DNA-cleavage domain enables the enzyme machinery to targ
196 e highlight the function of RNA in mediating DNA cleavage during genome rearrangements and pathogen d
198 pecific endonuclease that catalyzes specific DNA cleavage during V(D)J recombination, which is requir
199 ed with on- and off-target DNA, we find that DNA cleavage efficiencies scale with the extent to which
201 While CRISPR/Cas9 executes double-stranded DNA cleavage efficiently, closure of the broken chromoso
202 the benefits and drawbacks of three types of DNA cleavage enzymes (zinc finger endonucleases, transcr
203 deal scaffolds for engineering site-specific DNA cleavage enzymes for genome editing applications.
209 ed to amplified loci, the resulting multiple DNA cleavage events can be a cause of false positive hit
211 pUL33 is necessary for one of the two viral DNA cleavage events required to release individual genom
212 per shows a role for pUL33 in one of the two DNA cleavage events required to release monomeric genome
213 tial rapid endonuclease activity, additional DNA cleavage events then occur more slowly, leading to f
215 se pair into another without double-stranded DNA cleavage, excess stochastic insertions and deletions
216 In addition, double-stranded supercoiled DNA-cleavage experiments with shishijimicin A in competi
218 chromatin condensation, nuclear lamin A and DNA cleavage, fragmentation of the nuclear envelope, and
220 Coordinated domain motions of Cas9 prior to DNA cleavage have been extensively characterized but our
222 off-target analysis to assess Cas9-mediated DNA cleavage in human cells, we demonstrate that "enhanc
223 on of the cut site and increases the rate of DNA cleavage in modified versus unmodified junctions.
224 hile the aglycon (deglycobleomycin) mediates DNA cleavage in much the same fashion as bleomycin, it e
225 e results reveal the role of endonucleolytic DNA cleavage in restriction and yet point to diversity a
227 on that restriction enzymes caused extensive DNA cleavage in the absence of PT modifications in vivo.
228 companied by reduced transient double-strand DNA cleavage in the rDNA-promoter region and reduced pre
230 al regions of the sgRNA and allows efficient DNA cleavage in vitro as well as gene-editing in cells w
231 te that mutants perturbing ATP hydrolysis or DNA cleavage in vitro impair P2 OLD-mediated killing of
232 sigmoidal in nature, and rates and levels of DNA cleavage increased when metal ion mixtures were used
233 N-terminal sequence that is dispensable for DNA cleavage inhibition and have divergent C termini tha
235 displacement mechanism instead of oxidative DNA cleavage is confirmed by denaturing gel electrophore
236 pH-gated light-activated double-strand (ds) DNA cleavage is controlled by variations in electronic a
237 A design to improve the efficiency of target/DNA cleavage is critical to ensure the success of CRISPR
242 anding of repair outcomes after Cas9-induced DNA cleavage is still limited, especially in primary hum
244 exhibit reduced chromatin decompaction after DNA cleavage, lesser focal recruitment of homologous rec
250 e., for strongly bound DNAs, the facility of DNA cleavage must involve other parameters in addition t
251 nt protein that lacks endonuclease activity, DNA cleavage of the 3'-5' strand relative to the wild-ty
252 bp/s at 25 degrees C) and a requirement for DNA cleavage of two recognition sites in an inverted hea
257 We describe an unprecedented DNA-catalyzed DNA cleavage process in which a radical-based reaction p
258 ted with our simulations that Cas9-catalyzed DNA cleavage produces 1-bp staggered ends rather than ge
259 critical issue, this study characterized the DNA cleavage reaction of Escherichia coli topoisomerase
260 bservations, unrelated DNA-catalyzed radical DNA cleavage reactions require redox-active metals and l
262 of MtTOP1 was expressed and found to retain DNA cleavage-religation activity and catalyze single-str
265 of TerL variants for defects in binding and DNA cleavage, revealing that the ATPase domain is the pr
267 7-azaindenoisoquinolines intercalate at the DNA cleavage site in DNA-Top1 covalent complexes with th
268 calate between two base pairs outside of the DNA cleavage site, has been suggested to promote deforma
272 age distinguished 'intrinsic recognition' of DNA cleavage sites by topo IV from drug-induced preferen
276 oth an online archive of LHEs with validated DNA cleavage specificities and DNA-binding interactions,
277 f an extensive set of HE variants with novel DNA cleavage specificities using an integrated experimen
279 ors nucleases (TALENs) with broadly improved DNA cleavage specificity, establishing DB-PACE as a vers
284 up to 11 base pairs in length, which prevent DNA cleavage, still allow formation of a stable complex
286 kaging series initiates with double-stranded DNA cleavages that are scattered across a 170-bp region
287 reas [Ru(phen)(3)](2+)* does not show direct DNA cleavage, the deprotonated form of 1H(2)O(2+)* does
289 veral studies have focused on correcting for DNA cleavage toxicity biases associated with copy number
291 e have also analyzed the metal dependence of DNA cleavage using Mg(2+) ions at different concentratio
295 In addition, the metal-ion dependence of DNA cleavage was sigmoidal in nature, and rates and leve
296 ablish the role of this sequence in accurate DNA cleavage, we have determined the crystal structure o
298 opoisomerase-induced DNA breaks, we map Top2 DNA cleavage with strand-specific nucleotide resolution
300 hat DNA binding is far more promiscuous than DNA cleavage, yet the molecular cues that govern strand