ライフサイエンスコーパス: Deinococcus

1 ce in the pathways for dsDNA break repair in Deinococcus.

2 or R only in HU from Thermotoga, Thermus and Deinococcus.

3 the beta-hairpin structure that is unique to Deinococcus and Thermus species SSB proteins.

4 rrelated with the presence of Campylobacter, Deinococcus, and Sulfurospirillum Finally, we quantified

5 Gre factors (GreA and GreB) and the Thermus/Deinococcus anti-Gre factor Gfh1.

6 Deinococcaceae (e.g., Thermus, Meiothermus, Deinococcus) contain A/V-ATPases typically found in Arch

7 diation-resistant bacterial groups reported, Deinococcus, Enterococcus, Lactobacillus, and cyanobacte

8 Bacteria of the genus Deinococcus exhibit an extraordinary ability to withstan

9 e of five proteins induced to high levels in Deinococcus following extreme IR exposure and that play

10 Deinococcus (formerly Micrococcus) radiodurans is remark

11 failed, suggesting that this is an essential Deinococcus gene.

12 e first structures of the amylosucrases from Deinococcus geothermalis and Neisseria polysaccharea in

13 nzyme phosphorylase b from rabbit muscle and Deinococcus geothermalis glycogen branching enzyme.

14 A synthetase from a bacterium of the Thermus-Deinococcus group into the animal nuclear genome.

15 terial lineage of extremophiles, the Thermus-Deinococcus group.

16 contribute to the low substrate affinity of Deinococcus PRODH.

17 ree highly diverse taxonomic groups: Thermus/Deinococcus, Proteobacteria gamma/beta subdivision, and

18 ressed, and characterized a hemeprotein from Deinococcus radiodurans (D. radiodurans NO synthase, dei

19 complexes of the large ribosomal subunit of Deinococcus radiodurans (D50S) with these 16-membered se

20 otein from the radiation-resistant bacterium Deinococcus radiodurans (deiNOS) associates with an unus

21 Deinococcus radiodurans (DEIRA) can survive very high do

22 e RecA proteins of Escherichia coli (Ec) and Deinococcus radiodurans (Dr) both promote a DNA strand e

23 The resistance of Deinococcus radiodurans (Dr) to extreme doses of ionizin

24 Deinococcus radiodurans (Dr) withstands desiccation, rea

25 n enzyme from the amidohydrolase family from Deinococcus radiodurans (Dr-OPH) with homology to phosph

26 We present high-resolution structures of Deinococcus radiodurans (Dra)Nramp in multiple conformat

27 We present high-resolution structures of Deinococcus radiodurans (Dra)Nramp in three stable confo

28 Deinococcus radiodurans (Drad), a bacterium with an extr

29 h droplets of the bacterial phytochrome from Deinococcus radiodurans (DrBphP), which is weakly fluore

30 Here, we investigate DXPS from Deinococcus radiodurans (DrDXPS), showing that it has si

31 The RecA protein of Deinococcus radiodurans (DrRecA) has a central role in g

32 The RecQ helicase from Deinococcus radiodurans (DrRecQ) is unusual among RecQ f

33 otein from the radiation-resistant bacterium Deinococcus radiodurans (DrSSB) functions as a homodimer

34 The RecA protein of Deinococcus radiodurans (RecA(Dr)) is essential for the

35 on usages are characterized in the genome of Deinococcus radiodurans (strain R1).

36 weakly promiscuous PLL scaffold (Dr0930 from Deinococcus radiodurans ), we designed an extremely effi

37 The radiation-resistant bacterium Deinococcus radiodurans accumulates less carbonylation t

38 As an example, we use data on survival of Deinococcus radiodurans after high doses (thousands of G

39 rtholog enhances survival of the eubacterium Deinococcus radiodurans after ultraviolet irradiation.

40 We have purified the RecN protein from Deinococcus radiodurans and characterized its DNA-depend

41 ' from helix 40 of the large subunit rRNA in Deinococcus radiodurans and Escherichia coli, respective

42 einyl-tRNA synthetase from M. jannaschii and Deinococcus radiodurans and its characterization in vitr

43 herichia coli and to characterize DR_1025 of Deinococcus radiodurans and MM_0920 of Methanosarcina ma

44 ke proteins in two heterotrophic eubacteria, Deinococcus radiodurans and Pseudomonas aeruginosa.

45 proteins in the nonphotosynthetic eubacteria Deinococcus radiodurans and Pseudomonas aeruginosa.

46 coded by the radiation-resistant eubacterium Deinococcus radiodurans and show that DNA binding does n

47 In the radiation-resistant bacterium Deinococcus radiodurans and some eukaryotes, Ro has also

48 complex between the SF1B helicase RecD2 from Deinococcus radiodurans and ssDNA in the presence and ab

49 ts and genomic sequence analysis showed that Deinococcus radiodurans and Thermus thermophilus do not

50 te metabolism in the radiation-resistance of Deinococcus radiodurans are discussed.

51 When exponential-phase cultures of Deinococcus radiodurans are exposed to a 5000-Gray dose

52 taining polypeptides (Cys-polypeptides) from Deinococcus radiodurans as well as from mouse B16 melano

53 77) in the L1 loop of the non-discriminating Deinococcus radiodurans AspRS2 is required for tRNA(Asn)

54 crystal structure of the RecD2 helicase from Deinococcus radiodurans at 2.2-A resolution.

55 Fusing a photosensory core module of Deinococcus radiodurans bacterial phytochrome (DrBphP-PC

56 ome, using the chromophore-binding domain of Deinococcus radiodurans bacterial phytochrome assembled

57 ity by recombining the photosensor module of Deinococcus radiodurans bacterial phytochrome with the e

58 hore in the x-ray structure of a fragment of Deinococcus radiodurans bacteriophytochrome in the Pr fo

59 ino acids within the bilin-binding domain of Deinococcus radiodurans bacteriophytochrome with respect

60 sis of the chromophore-binding domain of the Deinococcus radiodurans bacteriophytochrome.

61 MarR family, regulates uricase expression in Deinococcus radiodurans by binding a shared promoter reg

62 Deinococcus radiodurans can reconstitute its genome from

63 stal structures of this D207H variant of the Deinococcus radiodurans CBD, in which His-207 is observe

64 ynthase in the radiation-resistant bacterium Deinococcus radiodurans charges tRNA with tryptophan and

65 We show applications to the analysis of Deinococcus radiodurans chromosome I, of two strains of

66 Gene Dr1184 from Deinococcus radiodurans codes for a Nudix enzyme (DR-CoA

67 enome of the radiation-resistant eubacterium Deinococcus radiodurans contains an ortholog of an RNA-b

68 the extremely radiation resistant bacterium Deinococcus radiodurans contains genes for two SSB homol

69 The radiation-resistant bacterium Deinococcus radiodurans contains two DNA-binding protein

70 of Ro in the radiation-resistant eubacterium Deinococcus radiodurans contributes to survival of this

71 anges in gene expression as stationary phase Deinococcus radiodurans cultures recover from acute expo

72 Deinococcus radiodurans disproportionately favored TGA m

73 Taq DNA pol C is most closely related to the Deinococcus radiodurans DNA pol C.

74 However, Deinococcus radiodurans Dps-1, which binds DNA with high

75 encoding prolyl-tRNA synthetase) or with the Deinococcus radiodurans DR0705 gene, the ortholog of the

76 The mutY homolog gene (mutY(Dr)) from Deinococcus radiodurans encodes a 39.4-kDa protein consi

77 Q helicase from the radioresistant bacterium Deinococcus radiodurans encodes three "Helicase and RNas

78 Unlike the Haloarcula marismortui and Deinococcus radiodurans examples, the lower portion of h

79 Deinococcus radiodurans exhibits an extraordinary resist

80 of iron, Dps-1 from the radiation-resistant Deinococcus radiodurans fails to protect DNA from hydrox

81 imental data from gene expression studies on Deinococcus radiodurans following DNA damage using cDNA

82 ntial for preserving the genome integrity of Deinococcus radiodurans following treatment by gamma rad

83 New interpretations of the capacity of Deinococcus radiodurans for resistance to high doses of

84 The P5CDHs from Thermus thermophilus and Deinococcus radiodurans form trimer-of-dimers hexamers i

85 rnative sigma factors were identified in the Deinococcus radiodurans genome sequence and designated s

86 n this issue how the genome of the bacterium Deinococcus radiodurans gets reassembled after being sha

87 Deinococcus radiodurans harbors a multipartite ploid gen

88 Deinococcus radiodurans has a remarkable capacity to sur

89 mparison with other Dps proteins, Dps-1 from Deinococcus radiodurans has an extended N terminus compr

90 The MarR homolog, HucR, from Deinococcus radiodurans has been shown to repress expres

91 smidic and intrachromosomal recombination in Deinococcus radiodurans has been studied recently and ha

92 The study of natural extremophiles such as Deinococcus radiodurans has revealed much.

93 genes from the radiation-resistant organism Deinococcus radiodurans have been cloned into vectors un

94 e we have identified, cloned and deleted the Deinococcus radiodurans HspR homologue, DR0934.

95 the structures of proline dehydrogenase from Deinococcus radiodurans in the oxidized state complexed

96 Here, we demonstrate that the RecF of Deinococcus radiodurans interacts with DNA as an ATP-dep

97 Deinococcus radiodurans is a gram-positive bacterium res

98 Deinococcus radiodurans is a highly radiation-resistant

99 Deinococcus radiodurans is a phylogenetically deep-branc

100 The radiation-resistant Deinococcus radiodurans is a spherical bacterium protect

101 RecD2 from Deinococcus radiodurans is a superfamily 1 DNA helicase

102 Deinococcus radiodurans is an atypical diderm bacterium

103 Deinococcus radiodurans is extraordinarily resistant to

104 The bacterium Deinococcus radiodurans is extremely resistant to high l

105 Deinococcus radiodurans is extremely resistant to ionizi

106 Deinococcus radiodurans is highly resistant to radiation

107 The radiation-resistant bacterium Deinococcus radiodurans is known as the world's toughest

108 Deinococcus radiodurans is known for its remarkable abil

109 The bacterium Deinococcus radiodurans is resistant to extremely high l

110 from the extremely radioresistant bacterium Deinococcus radiodurans is the exact inverse of this est

111 Deinococcus radiodurans is unique in its ability to reco

112 o-electron microscopy (cryo-EM) structure of Deinococcus radiodurans ISDra2 TnpB in complex with its

113 We report that the complex between Deinococcus radiodurans NOS (deiNOS) and an unusual tryp

114 Recent structures of Deinococcus radiodurans Nramp (DraNramp) in multiple con

115 otein in the radiation-resistant eubacterium Deinococcus radiodurans participates in ribosomal RNA (r

116 bridges at the dimerization interface of the Deinococcus radiodurans phytochrome (DrBphP).

117 ructure of the chromophore-binding domain of Deinococcus radiodurans phytochrome assembled with its c

118 re of the chromophore-binding domains of the Deinococcus radiodurans phytochrome at 2.1 A resolution.

119 oreceptor through structural analysis of the Deinococcus radiodurans phytochrome BphP assembled with

120 HY domain of a 57-kDa photosensory module of Deinococcus radiodurans phytochrome changes from a struc

121 ochemical, and computational analyses of the Deinococcus radiodurans phytochrome, we demonstrate that

122 ing (Pr) state, the bilin chromophore of the Deinococcus radiodurans proteobacterial phytochrome (DrB

123 Deinococcus radiodurans R1 (DEIRA) is a bacterium best k

124 Deinococcus radiodurans R1 and other members of this gen

125 e complete genome sequence of the bacterium, Deinococcus radiodurans R1 has been released.

126 ual ORFs from Shewanella oneidensis MR-1 and Deinococcus radiodurans R1 have been designed.

127 equence of the radiation-resistant bacterium Deinococcus radiodurans R1 is composed of two chromosome

128 Deinococcus radiodurans R1 is extremely resistant to bot

129 , developed to facilitate gene disruption in Deinococcus radiodurans R1, has been used to inactivate

130 in and Snf2/Rad54 helicase were reported for Deinococcus radiodurans R1, leading to the speculation t

131 e hypothetical uricase regulator (HucR) from Deinococcus radiodurans R1.

132 We show here that Deinococcus radiodurans RecD2 helicase inactivates Esche

133 Intriguingly, Deinococcus radiodurans RecO does not bind SSB-Ct and we

134 Deinococcus radiodurans represents an organism in which

135 Deinococcus radiodurans RNA ligase (DraRnl) is a templat

136 Deinococcus radiodurans RNA ligase (DraRnl) is the found

137 Deinococcus radiodurans RNA ligase (DraRnl) seals 3-OH/5

138 hermophilic Thermus aquaticus and mesophilic Deinococcus radiodurans RNAPs and identify the FL as an

139 Deinococcus radiodurans single-stranded (ss) DNA binding

140 The Deinococcus radiodurans SSB protein has an occluded site

141 rmined a 1.8-A-resolution x-ray structure of Deinococcus radiodurans SSB.

142 IRS24 is a DNA damage-sensitive strain of Deinococcus radiodurans strain 302 carrying a mutation i

143 equence of the radiation-resistant bacterium Deinococcus radiodurans suggests the presence of both di

144 erization of HucR, a novel MarR homolog from Deinococcus radiodurans that demonstrates phenolic sensi

145 fication of the large ribosomal subunit from Deinococcus radiodurans that exploits its association wi

146 this instrument, we employ a model system of Deinococcus radiodurans that has been engineered to expr

147 response of the genomes of cyanobacteria and Deinococcus radiodurans to ionizing radiation.

148 mplex from the radiation-resistant bacterium Deinococcus radiodurans to protect protein epitopes from

149 The ability of Deinococcus radiodurans to recover from extensive DNA da

150 The remarkable ability of bacterium Deinococcus radiodurans to survive extreme doses of gamm

151 re we report the 1.75-A crystal structure of Deinococcus radiodurans topoisomerase IB (DraTopIB), a p

152 Deinococcus radiodurans topoisomerase IB (DraTopIB), an

153 nvelope of the radiation-resistant bacterium Deinococcus radiodurans was studied by cryo-electron mic

154 y identified peptides from the microorganism Deinococcus radiodurans was used for the training of the

155 -one ionizing radiation-sensitive strains of Deinococcus radiodurans were evaluated for their ability

156 hesis activity by a different bacterial NOS (Deinococcus radiodurans) but not by any of the three mam

157 aeal (Haloarcula marismortui) and bacterial (Deinococcus radiodurans) large ribosomal subunits have b

158 uman and two bacterial (Escherichia coli and Deinococcus radiodurans) MnSODs.

159 Deinococcus radiodurans, a highly radioresistant and str

160 used to measure in situ Mn(II) speciation in Deinococcus radiodurans, a radiation-resistant bacteria

161 A whole-genome restriction map of Deinococcus radiodurans, a radiation-resistant bacterium

162 Deinococcus radiodurans, a radiation-resistant bacterium

163 certain other bacteria, such as E. coli and Deinococcus radiodurans, although the average mutation r

164 r analyzing mutations in Escherichia coli to Deinococcus radiodurans, an extremeophile with an astoni

165 l subunit RNAs of Haloarcula marismortui and Deinococcus radiodurans, and the small ribosomal subunit

166 e, by comparing RNAPs from Escherichia coli, Deinococcus radiodurans, and Thermus aquaticus, we show

167 present in Yersinia pestis and the other in Deinococcus radiodurans, appear to encode closely relate

168 Here we show that in Synechocystis sp. and Deinococcus radiodurans, as in A. aeolicus, CCA is added

169 ed open reading frames for the microorganism Deinococcus radiodurans, consistent with previous result

170 ned nucleotide co-occurrence patterns in the Deinococcus radiodurans, D. geothermalis, and Thermus th

171 Four of these genomes (Deinococcus radiodurans, Escherichia coli, Haemophilus i

172 tridium sticklandii, Cytophaga hutchinsonii, Deinococcus radiodurans, Escherichia coli, Magnetospiril

173 Decontamination testing of Deinococcus radiodurans, Geobacillus stearothermophilus

174 mic function-type heat shock sigma factor of Deinococcus radiodurans, has been shown to play a centra

175 nformation on DXS, from Escherichia coli and Deinococcus radiodurans, in complex with the coenzyme th

176 rboxypeptidase, an S9C subfamily member from Deinococcus radiodurans, in its active and inactive stat

177 We now show that a bacteriophytochrome from Deinococcus radiodurans, incorporating biliverdin as the

178 by one particular family member, ISDra2 from Deinococcus radiodurans, is dramatically stimulated upon

179 Deinococcus radiodurans, known for its extraordinary DNA

180 Shewanella putrefaciens, Synechocystis sp., Deinococcus radiodurans, Pasteurella multocida, and Acti

181 and 200 than those for Escherichia coli and Deinococcus radiodurans, respectively.

182 nctions have been characterized primarily in Deinococcus radiodurans, the first sequenced bacterium w

183 velopment of bioremediation strategies using Deinococcus radiodurans, the most radiation resistant or

184 ive potential lateral transfer with archaea; Deinococcus radiodurans, the most radiation-resistant mi

185 truction and characterization of recombinant Deinococcus radiodurans, the most radiation-resistant or

186 In the extremophile bacterium Deinococcus radiodurans, the outermost surface layer is

187 onuclease A and the ICAT-labeled proteome of Deinococcus radiodurans, the presence of these label-spe

188 In both animal cells and the eubacterium Deinococcus radiodurans, the Ro autoantigen, a ring-shap

189 In the only studied bacterium, Deinococcus radiodurans, the Ro ortholog Rsr functions i

190 ersal in Bacteria as t(6)A is dispensable in Deinococcus radiodurans, Thermus thermophilus, Synechocy

191 The NOS gene from one such bacterium, Deinococcus radiodurans, was cloned and expressed (deiNO

192 member of the amidohydrolase superfamily in Deinococcus radiodurans, was cloned, expressed, and puri

193 siccation- and radiation-resistant bacterium Deinococcus radiodurans, we suggest that the extraordina

194 d based on the radiation-resistant bacterium Deinococcus radiodurans, which is being engineered to ex

195 we analyzed the sHsp system of the bacterium Deinococcus radiodurans, which is resistant against vari

196 ratio found in the radioresistant bacterium Deinococcus radiodurans, with [Mn(2+)] = 1 mM.

197 viously shown that urate is a ligand for the Deinococcus radiodurans-encoded MarR homolog HucR (hypot

198 structure of the large ribosomal subunit of Deinococcus radiodurans.

199 aRnl) from the radiation-resistant bacterium Deinococcus radiodurans.

200 the extremely radiation resistant bacterium Deinococcus radiodurans.

201 Shewanella oneidensis, Escherichia coli and Deinococcus radiodurans.

202 r the ionizing radiation-resistant bacterium Deinococcus radiodurans.

203 m the ionizing radiation-resistant bacterium Deinococcus radiodurans.

204 i, and the extremely radioresistant organism Deinococcus radiodurans.

205 ccharomyces cerevisiae, Eschericia coli, and Deinococcus radiodurans.

206 d a famously DNA damage-resistant bacterium, Deinococcus radiodurans.

207 ystallographic movie of the phytochrome from Deinococcus radiodurans.

208 sensory core of the bacteriophytochrome from Deinococcus radiodurans.

209 ly: LutC protein, encoded by ORF DR_1909, of Deinococcus radiodurans.

210 trometry and compared to a tryptic digest of Deinococcus radiodurans.

211 for 50S subunit complexes of the eubacterium Deinococcus radiodurans.

212 r, using the bacteriophytochrome (BphP) from Deinococcus radiodurans.

213 the populations approached that exhibited by Deinococcus radiodurans.

214 Escherichia coli, Thermus thermophilus, and Deinococcus radiodurans.

215 e present the crystal structure of RecF from Deinococcus radiodurans.

216 dinary radiation resistance on the bacterium Deinococcus radiodurans.

217 sis-dependent DNA strand-annealing system of Deinococcus radiodurans.

218 were previously uncharacterized, including a Deinococcus-related organism, relatives of which have be

219 |RNN and NNR|YNN codon pairs, whereas in the Deinococcus species the opposite over-/underabundance re

220 This result demonstrates that in Deinococcus, the only route to asparagine is via asparag

221 However, SSB proteins from the Deinococcus-Thermus genera are exceptions to this rule,

222 -Proteobacteria, Clostridia, Actinobacteria, Deinococcus-Thermus species and DNAs from environmental

223 Thermotogales, Actinobacteria, Chloroflexi, Deinococcus-Thermus, and Proteobacteria.

224 n members of Firmicutes, Actinobacteria, and Deinococcus-Thermus, but not in Proteobacteria, where (p

225 cterial phylogenetic tree, i.e., Thermotoga, Deinococcus-Thermus, Cyanobacteria, spirochetes, and alp

226 ory, communities were dominated by Aquificae/Deinococcus-Thermus, then Chlorobi/Chloroflexi/Cyanobact

227 el radiation-tolerant groups: in addition to Deinococcus-Thermus, which reached up to 20% relative ab

228 However, the evolution of Deinococcus was not driven by IR.

229 response to DNA damage was characterized in Deinococcus, which is controlled by the specific cleavag