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1 IDR is also an open source platform that others can use
2 IDR links data from several imaging modalities, includin
3 IDR-1002 also dampened the IFN-gamma response and repres
4 IDR-1018 is effective in the brain when given systemical
5 IDR-1018 reduced inflammatory mediators produced by LPS-
6 IDR-1018 selectively attenuated hyperinflammatory cytoki
7 IDR-1018 suppresses proinflammatory mediators and cell i
8 IDRs were then assessed for their ability to confer neur
11 phosphotyrosine-containing sequence, pY(173)IDR, does not conform to the canonical recognition motif
13 variation across hospitals for STAT 1 to 3 (IDR 3.0 [95% CrI 2.1-4.2]) and STAT 4 or 5 (IDR 3.1 [95%
15 ays [IQR 63-303] vs 139.5 days [63.0-309.5]; IDR 0.84 [95% CI 0.51-1.38]), or time to first readmissi
16 (upper versus lower decile 5.0% versus 1.6%, IDR 3.1 [95% CrI 2.5-3.7]), mean length of stay by 1.8-f
20 antly, the molecular understanding of how an IDR-rich protein works in an essential partnership with
23 change by NMR to investigate the state of an IDR that folds upon binding through the observation of t
24 d isolated ID3 transiently interacts with an IDR of ZFP106 in a fashion that disorder of both regions
25 th synthetic host-defense peptides DJK-5 and IDR-1018 under host-like conditions and in a murine absc
26 F cell transcriptional responses to FliC and IDR-1018 identified dysfunctional autophagy as the targe
31 i.e. entirely lack structural elements, and IDRs as regions that are at least five consecutive resid
32 prevalence and functional roles of IDPs and IDRs associated with the release and recycling of synapt
34 per fundamental characterization of IDPs and IDRs for discovering new functions and relevant mechanis
35 dered proteins and protein regions (IDPs and IDRs, respectively) in synaptic vesicle trafficking and
41 sphorylation of the PEST motif in the AtWRI1(IDR) (3) domain may affect AtWRI1-mediated plant oil bio
42 other studies, localize the TPO autoantibody IDR to the junction of the CCP-like domain and the much
47 fically, although the SLiM was surrounded by IDRs, individual intrinsic alpha-helix propensities vari
49 -terminal intrinsically disordered region (C-IDR), remaining disordered after phosphorylation, contai
53 uster that binds an evolutionarily conserved IDR within the metazoan TFIID transcription complex.
54 water versus POU-treated water consumption (IDR = 1.52; 95% CI: 1.05, 2.20), but there was no associ
56 of stay by 1.8-fold (19.2 versus 10.5 days, IDR 1.8 [95% CrI 1.8-1.9]), and major complications by >
58 nd nonspecific image analysis, we determined IDRs of a diverse set of substances from individual pure
60 d evolution, we focused on a highly diverged IDR in Saccharomyces cerevisiae that is involved in regu
62 gests a new avenue for targeting the elusive IDRs by harnessing certain features of metal-based compl
63 gm for IDR function is that disorder enables IDRs to adopt multiple conformations, expanding the abil
68 s an unanticipated multi-functional role for IDRs in regulating both facilitated diffusion on chromat
70 The human homolog of Ubp10, USP36, also has IDRs flanking its catalytic domain, and these IDRs simil
71 gths were incorporated into a synthetic HDP, IDR-1018, and the impact of these substitutions on the a
73 -separated candidate proteins exhibit higher IDR contents, higher mean net charge and lower hydropath
74 gle-molecule biophysics, we characterize how IDRs regulate the functions of the yeast MutLalpha (Mlh1
75 x is an excellent example to demonstrate how IDRs and SLiMs govern communication between four differe
76 sensitivity to various doses of idarubicin (IDR), daunorubicin (DNR), or mitoxantrone (MTA) gave the
78 to collect simultaneous snapshots of an IDP/IDR through different two-dimensional spectra provides a
79 mbraneless biomolecular condensates and IDPs/IDRs are functionally involved in key cellular processes
80 icate specific types of condensates and IDPs/IDRs in important cellular level processes and molecular
81 of which are organized or regulated by IDPs/IDRs, can enable spatial and temporal regulation of comp
83 pproach is generally applicable to many IDPs/IDRs whose assignment is available in the Biological Mag
84 s subsequently developed for studies of IDPs/IDRs and applied to the dilute phase of a 103-residue di
85 erization and functional annotations of IDPs/IDRs, and is intended to provide an invaluable resource
86 information on more than 800 entries of IDPs/IDRs, i.e. intrinsically disordered proteins or regions
87 structural and dynamical information on IDPs/IDRs, and recent efforts have focused on the development
88 rinsically disordered proteins/regions (IDPs/IDRs) are proteins or peptide segments that fail to form
89 rinsically disordered proteins/regions (IDPs/IDRs) contribute to a diverse array of molecular functio
90 ically disordered proteins and regions (IDPs/IDRs) that do not adopt a dominant well-folded structure
91 and the frequency of "sticky" amino acids in IDRs (those more frequently involved in protein interfac
92 Strikingly, these proteins are enriched in IDRs and contribute significantly to all the observed tr
93 ngs highlight the importance of mutations in IDRs and refine the traditional structure-centric view o
94 demonstrate that 20% of disease mutations in IDRs cause local disorder-to-order transitions, which re
96 to which the properties of, and content in, IDRs have adapted to enable functional diversity while l
99 increases the likelihood of long-range intra-IDR interactions that involve both the primary and auxil
101 S-1 cells is associated with cleavage of its IDR, conceivably to prevent its aggregation upon exposur
103 ultiple, distinct binding modules within its IDRs that are necessary and sufficient for directing pro
104 IDRs), the N-terminal IDR and central-linker IDR, as well as the folded C-terminal oligomerization do
105 e and currently a major challenge is linking IDRs to their biological roles from the molecular to the
106 libraries, which demonstrated that the long IDR linking the KIX domain and bromodomain of CBP (terme
108 ur data support a model whereby nascent NepR(IDR)-PhyR interactions and REC phosphorylation coordinat
110 , our results demonstrate that AS control of IDR-mediated interactions between hnRNPs represents an i
111 by means of which real-time determination of IDR from continuously changing effective surface areas o
112 matory and autophagosome-clearing effects of IDR-1018, as did a chemical inhibitor of Akt and an acti
114 estigate the anti-inflammatory mechanisms of IDR-1002 in vivo, the PMA-induced mouse ear inflammation
115 creation of enzymatically stable mimetics of IDR-1018 and identify a promising new cyclic analogue ag
116 ope to show that nanocompartmentalization of IDR subdomains leads to a remarkably elaborate gating st
117 protein interaction scaffolding abilities of IDRs in the regulation of dynamic protein ubiquitination
118 Over time, sequence-based classifiers of IDRs have become fairly accurate and currently a major c
119 DR content and the amino acid composition of IDRs experience negative selection as the protein concen
121 ts that connect sequence-derived features of IDRs to their conformations, propensities to form biomol
122 as state of the art in the identification of IDRs, and our self-assessment shows that it significantl
125 est that the primary amino acid sequences of IDRs encode a variety of their interaction behaviors.
126 fferent classes of experiment for studies of IDRs or IDPs in both dilute and phase-separated environm
128 pothesis, we find that diverged, orthologous IDRs can mostly recapitulate wild-type function and fitn
129 ection, the functional output of orthologous IDRs could be maintained, such that diverse genotypes co
135 erminal intrinsically disordered region (p27 IDR) of the cell cycle inhibitory protein p27(Kip1).
136 phorylation of Thr-187 (T187) within the p27 IDR controls entry into S phase of the cell division cyc
137 ver cryptic sequence features within the p27 IDR that influence the efficiency of T187 phosphorylatio
138 re, we designed sequence variants of the p27 IDR to alter charge patterning outside the primary subst
140 ross section distributions for wild-type p27 IDR and two variants with identical amino acid compositi
141 e charge patterning within the wild-type p27 IDR may be optimized to sample both highly solvated and
142 the cryptic sequence features of the WT p27 IDR negatively regulate T187 phosphorylation signaling.
144 ntibiofilm innate defense regulator peptide (IDR)-1018 based on three different synthetic strategies
146 conformational properties of polyampholytic IDRs are governed as much by linear charge patterning as
152 insic disorder in otherwise folded proteins (IDRs) play important roles in many different biological
153 nsically disordered regions within proteins (IDRs) serve an increasingly expansive list of biological
155 ension of the Irreproducible Discovery Rate (IDR) method called IDR2D that identifies replicable inte
158 ion was quantified by the interdecile ratio (IDR, upper versus lower 10%) and 95% credible intervals
159 1.91] vs 2.2 [1.43]; incident density ratio [IDR] 0.97 [95% CI 0.76-1.24]), duration of readmissions
161 y which its intrinsically disordered region (IDR) at the carboxyl-terminus (C-tail) executes its func
162 ntified the intrinsically disordered region (IDR) at the N-terminal domains of OsDGAT1 proteins.
163 600-amino acid intrinsic disordered region (IDR) both directs cyclin C-Cdk8 association and serves a
164 posed of an intrinsically disordered region (IDR) followed by a highly conserved amphipathic alpha-he
165 nd that the intrinsically disordered region (IDR) of APC, which contains multiple beta-catenin and Ax
166 N-terminal intrinsically disordered region (IDR) of DEAD-box helicase Ddx4, as a test case, to asses
167 PhyR and an intrinsically disordered region (IDR) of the anti-sigma factor, NepR, by solution NMR spe
169 omprises an intrinsically disordered region (IDR) that facilitates its liquid-liquid phase separation
170 code for an intrinsically disordered region (IDR), which in vitro acts as a condensing factor for the
171 within the intrinsically disordered region (IDR), which is the region for compaction of chromatin in
176 gely restricted to an immunodominant region (IDR) on the extracellular region of the native molecule.
178 ons in the intrinsically disordered regions (IDR) of EloA interfere with its targeting and localizati
180 by intrinsically disordered protein regions (IDR) of RNA binding proteins in vitro have the opposite
181 ally disordered proteins (IDPs) and regions (IDRs) in the human proteome together with their lack of
182 ally disordered proteins (IDPs) and regions (IDRs), which represent approximately 30% of the proteome
184 including intrinsically disordered regions (IDRs) and prion-like domains, such characteristics are i
189 mploys the intrinsically disordered regions (IDRs) from a family of phenylalanine-glycine-rich nucleo
191 ized three intrinsically disordered regions (IDRs) in Arabidopsis WRI1, and found that one C-terminal
192 e distinct intrinsically disordered regions (IDRs) in G3BP1 regulates its intrinsic propensity for LL
193 teins have intrinsically disordered regions (IDRs) in their C-terminal domains and that these regions
194 as well as intrinsically disordered regions (IDRs) of complex protein machineries have recently been
195 ded within intrinsically disordered regions (IDRs) of proteins are often the sites of posttranslation
196 s encoding intrinsically disordered regions (IDRs) of proteins, in particular those containing glycin
197 line where intrinsically disordered regions (IDRs) of SRRM2 are genetically deleted, leads to a near-
200 Protein intrinsically disordered regions (IDRs) play an important role in many biological processe
202 onsists of intrinsically disordered regions (IDRs) that do not fold into well-defined 3D structures y
203 t1 contain intrinsically disordered regions (IDRs) that drive LLPS and constitute a new class of phas
204 ddress the intrinsically disordered regions (IDRs) that typically flank the core as well as the small
205 use their intrinsically disordered regions (IDRs) to enter and concentrate in Mediator condensates a
206 quires two intrinsically disordered regions (IDRs), the N-terminal IDR and central-linker IDR, as wel
207 ns contain intrinsically disordered regions (IDRs), which act in unfolded states or by undergoing tra
208 extensive intrinsically disordered regions (IDRs), which are conformationally plastic and do not app
212 cally disordered proteins (IDPs) or regions (IDRs) perform diverse cellular functions, but are also p
214 ordered proteins (IDPs) and protein regions (IDRs) engage in transient, yet specific, interactions wi
215 by intrinsically disordered protein regions (IDRs) have emerged as a ubiquitous mechanism for assembl
216 Intrinsically disordered protein regions (IDRs) lack a well defined three-dimensional structure bu
217 by intrinsically disordered protein regions (IDRs) that undergo multisite Serine/Threonine phosphoryl
218 ordered proteins (IDPs), or protein regions (IDRs), are modulated by the nature of amino acid side ch
222 e conformational properties of an 81-residue IDR from the S. cerevisiae transcription factor Ash1.
223 s, we built a prototype Image Data Resource (IDR) that collects and integrates imaging data acquired
225 Together these results indicate that Cdc15's IDR has a nonredundant essential function that coordinat
226 interaction network, the higher a protein's IDR content, the more frequently it interacts with IDR-c
228 nal interactions, commonly mediated by short IDR segments, thereby counterbalancing the loss in overa
230 nd deleted midpoint and head-proximal sigma1 IDRs to generate DeltaIDR1 and DeltaIDR2 mutant viruses,
231 , but recent studies have shown that similar IDRs mediate specific and critical interactions in other
234 r recognition features present in the C-tail IDR enhance PTEN's protein-protein interactions that are
239 bidopsis WRI1, and found that one C-terminal IDR of AtWRI1 (IDR3) affects the stability of AtWRI1.
240 question using the polyampholytic C-terminal IDR of the cell cycle inhibitory protein p27(Kip1) (p27)
241 ly disordered regions (IDRs), the N-terminal IDR and central-linker IDR, as well as the folded C-term
243 We present a molecular classification of TF IDRs, which provides a framework to dissect TF function
244 roteins feature more sticky amino acids than IDRs of their non-multifunctional counterparts, or the s
246 on the mouse ear transcriptome revealed that IDR-1002 reduced sterile inflammation by suppressing the
247 We highlight new evidence suggesting that IDRs are often critical for histone chaperone function a
250 y disordered region, we sought to delete the IDR to study the functional significance of calcium-depe
252 heterologous proteins can substitute for the IDR and the hA helix of human thymidylate synthase, indi
253 n simply as an extension or scaffold for the IDR; rather, it provides a specific structural component
254 It has been a long-standing mystery how the IDR-mediated mass exchange can be rapid yet selective.
255 ted by flexible, hydrophilic segments in the IDR as a key determinant of TDP43 phase properties.
259 nging: in solution-state NMR, signals of the IDR in the interacting region become broad, weak, and of
260 so find that the electrostatic charge of the IDR is correlated with signaling output and, using phylo
261 esidues in Gly/Ser-Tyr-Gly/Ser motifs of the IDR reduced this effect, depending on the number but not
263 conformation of the interacting part of the IDR was determined and subsequently docked onto the stru
264 Furthermore, the tryptic stability of the IDR-1018 derivatives was assessed revealing that proteol
267 non-aromatic residues or phosphorylating the IDR raised the phase separation threshold above that of
268 CA512 RESP18HD residues 35-90, preceding the IDR, inhibit insulin fibrillation in vitro Finally, we f
271 We found that CaM binds directly to the IDR in the C-terminal domain of prestin in a calcium-obl
273 the minor substitutions observed within the IDR of gp41 of HIV-1 group M subtypes do not affect anti
274 tify the SLiM bound by RCD1, we analyzed the IDRs in three protein partners, DREB2A (dehydration-resp
275 onse to signaling is mediated in part by the IDRs of the signaling factors, which cause these factors
276 stem to study condensed phases driven by the IDRs of various RNP body proteins, including FUS, DDX4,
277 rable and unfavorable contributions from the IDRs surrounding the SLiM to the interactions with RCD1,
283 DRs flanking its catalytic domain, and these IDRs similarly contain binding modules important for pro
286 these results support a model in which this IDR of Med13 plays a key role in controlling a molecular
291 se-response analyses of the sensitivities to IDR, DNR, and MTA of leukemia cells from 4 other patient
294 onoclonal autoantibodies that define the TPO IDR, as well as polyclonal TPO autoantibodies in patient
296 n both instances, treatment of CF cells with IDR-1018 abolished the accumulation of LC3 induced by Fl
297 ntent, the more frequently it interacts with IDR-containing partners, and the more functionally diver
298 were analyzed in pups that were treated with IDR-1018 either 4 hours before LPS or 3 hours after LPS+
299 We propose that sequence features within IDRs have evolved to ensure an optimal balance of sequen
300 ly more readmissions than the group without (IDR 1.39 [95% CI 1.07-1.79]) and we noted no significant