ライフサイエンスコーパス: O. sativa

1 the whole-genome resequencing data from 3458 O. sativa, O. glaberrima, and O. barthii accessions indi

2 (Oryza australiensis) with temperate-adapted O. sativa after sustained exposure to heat, as well as d

3 from neutral evolution was not found in all O. sativa groups.

4 Based on this geographical analysis, O. sativa indica was domesticated within a region south

5 s produced in the roots of B. distachyon and O. sativa.

6 ntal perturbations in both B. distachyon and O. sativa.

7 s was examined more detailed in A. majus and O. sativa.

8 ion of large syntenic blocks between NWR and O. sativa, which were used to identify putative seed-sha

9 s between Oryza rufipogon (red pericarp) and O. sativa cv Jefferson (white pericarp).

10 4-19 Mb) between the three Oryza species and O. sativa.

11 tment of S. lycopersicum, M. truncatula, and O. sativa roots with concentrations of synthetic auxin a

12 ry relationships of Pi-ta haplotypes between O. sativa and O. rufipogon.

13 ient for root hair development in the cereal O. sativa (rice).

14 kdown in a cross between "widely compatible" O. sativa ssp. japonica cultivar Lemont from the Souther

15 ication alleles are common to all cultivated O. sativa varieties.

16 ve been lost in its domesticated descendant, O. sativa ssp.

17 Despite being a true diploid, O. sativa has at least two R genes.

18 ree reference genome sequences for two elite O. sativa xian/indica rice varieties, Zhenshan 97 and Mi

19 in the whole-genome sequences available for O. sativa (AA), O. glaberrima (AA), and O. brachyantha (

20 annotated 36.1 Mb ( approximately 97%) from O. sativa subsp. japonica cv Nipponbare.

21 a and Oryza brachyantha, which diverged from O. sativa 1 and 10 million years ago, respectively, reve

22 neration of deep-coverage BAC libraries from O. sativa ssp. japonica c.v. Nipponbare and the sequenci

23 p to 42 degrees C, contrasting with RCA from O. sativa, which was inhibited at 36 degrees C.

24 approximately 450-kb region from AA genome, O. sativa L. ssp. japonica.

25 uencing Project's finished reference genome--O. sativa ssp. japonica c.v. Nipponbare.

26 i), cultivated and landraces (O. glaberrima, O. sativa), and improved varieties derived through inter

27 k for the molecular analysis of diversity in O. sativa.

28 By contrast, Rca per unit Rubisco doubled in O. sativa at 45 degrees C while CO(2) assimilation was s

29 ow that there are three RSL class I genes in O. sativa and that each is expressed in developing root

30 ariation, rs10234287911 (G/A), identified in O. sativa pre-miR396c sequences alters base pairing abov

31 NATs may form complex regulatory networks in O. sativa.

32 e investigation of NAT-derived small RNAs in O. sativa.

33 photosynthetic rate was almost 50% slower in O. sativa at 45 degrees C than at 28 degrees C, while in

34 rast, 45 degrees C slowed growth strongly in O. sativa.

35 ariation in flanking regions around Pi-ta in O. sativa suggest that the size of the resistant Pi-ta i

36 ssion of Sub1A-1 in a submergence-intolerant O. sativa ssp. japonica conferred enhanced tolerance to

37 . barthii, O. glaberrima, O. longistaminata, O. sativa spp. indica and japonica.

38 CO(2) enrichment in O. australiensis but not O. sativa, reflecting more robust carboxylation capacity

39 NP variants across 413 diverse accessions of O. sativa collected from 82 countries that were systemat

40 or is ubiquitous among the wild ancestors of O. sativa, in which it is closely associated with seed s

41 ucted using meiotic pachytene chromosomes of O. sativa spp. japonica rice var. Nipponbare.

42 ogy are consistent with the domestication of O. sativa japonica in the Yangtze River valley of southe

43 pogon, suggesting multiple domestications of O. sativa.

44 afforded significant protection to the GI of O. sativa seeds exposed to Cs-137 and to all seeds expos

45 ng in O. rufipogon, the direct progenitor of O. sativa ssp.

46 opulations clustered with control samples of O. sativa, subspecies indica and japonica, indicating th

47 Using the sequence of O. sativa subsp. japonica cv Nipponbare from the Interna

48 a was estimated to be 8% larger than that of O. sativa with individual chromosome differences of 1.5-

49 or-like transmembrane protein kinase, OsTMK (O. sativa transmembrane kinase).

50 om subspecies within domesticated Asian rice O. sativa as well as their closely related wild relative

51 seases for the cultivated rice Oryza sativa (O. sativa).

52 ablished and is in the process of sequencing O. sativa spp. japonica var "Nipponbare" using a bacteri

53 RSL class I genes have been conserved since O. sativa and A. thaliana last shared a common ancestor.

54 ovo open reading frames in the focal species O. sativa subspecies japonica, which were all detected i

55 s composed of seven AA genome Oryza species: O. sativa, O. rufipogon, O. nivara, O. meridionalis, O.

56 t v2 can use genes of the related subspecies O. sativa ssp. indica and the reference plant Arabidopsi

57 tially targeting the lncRNAs of A. thaliana, O. sativa, and Z. mays, respectively.

58 We further determined that O. sativa Homeobox 1 (OSH1) bound two regions of RS2-9,

59 A few cultivars, such as the O. sativa ssp. indica cultivar FR13A, are highly toleran

60 versions that span an average of ~29% of the O. sativa cv. Nipponbare reference genome sequence.

61 % of the punctata FPC map covered 98% of the O. sativa genome sequence.

62 in O. rufipogon (<<40 kb) than in any of the O. sativa groups assayed here.

63 ces (BESs) and 34,224 fingerprints, onto the O. sativa genome sequence.

64 data from paired-end clone alignments to the O. sativa reference genome and physical maps.

65 We also examined how useful the O. sativa genome and ESTs from other species are, compar

66 f DNA TEs in O. brachyantha is comparable to O. sativa; however, the density of RNA TEs is dramatical

67 a set of O. glaberrima genes orthologous to O. sativa genes that are known to be associated with dom

68 This catalog of confirmed SV in reference to O. sativa provides an entry point for future research in

69 ons in the Oryza species genomes relative to O. sativa by combining data from paired-end clone alignm

70 Application of this tool to O. sativa twister achieved the spatial (75 um) and tempo

71 In the expanded regions unique to O. sativa we found enrichment in transposable elements (

72 plant proteomes (A. thaliana, M. truncatula, O. sativa, and P. trichocarpa), and analyzed using vario

73 astern India, Myanmar, and Thailand, whereas O. sativa japonica was domesticated from wild rice in so

74 lated O. brachyantha shares colinearity with O. sativa, offering opportunities to use comparative gen