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1 genomes that represent the 12 chromosomes of Oryza.
2 mosome variations and evolution in the genus Oryza.
3 p and nR of several of specimens of the same Oryza AA genome species provides insight into the evolut
7 genomics analyses of 20 O. glaberrima and 94 Oryza barthii accessions support the hypothesis that O.
10 opsis LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 and Oryza G1 (ALOG) family protein, named M. polymorpha LATE
11 analysis of their source loci (PHAS) in five Oryza genomes and combined this with analysis of high-th
13 ingly, the grain of African cultivated rice (Oryza glaberrima Steud.) typically is smaller than that
17 rphisms in the rice species Oryza sativa and Oryza glaberrima, we find that DNA repair following tran
21 Oryza sativa, and its wild African relative, Oryza longistaminata, was analyzed using the new method.
25 rain yield QTL in cultivated rice, from four Oryza polyploids of various ages and their likely diploi
27 new executor R gene derived from wild rice (Oryza rufipogon) that confers an extremely broad spectru
28 executor R gene derived from the wild rice (Oryza rufipogon) that confers an extremely broad spectru
31 AtSHR), Brachypodium distachyon (BdSHR), and Oryza sativa (OsSHR1 and OsSHR2) function in patterning
32 motif, and promotes vertical shoot growth in Oryza sativa (rice) and Arabidopsis through influencing
33 uences from 3,000 accessions of domesticated Oryza sativa (rice) and the wild progenitor Oryza rufipo
35 332 NBS-LRR genes cloned from five resistant Oryza sativa (rice) cultivars for their ability to confe
38 ificance of this processing, we isolated two Oryza sativa (rice) mutants (fuct-1 and fuct-2) with los
40 hways in these domains for reference species Oryza sativa (rice) supported by published literature an
41 machine learning models were established in Oryza sativa (rice) that could accurately distinguish be
44 eaves of Zea mays (maize), a C(4) plant, and Oryza sativa (rice), a C(3) plant, using a statistical m
45 six prioritized key dietary protein sources: Oryza sativa (rice), Triticum aestivum (wheat flour), Le
51 transposon polymorphisms in the rice species Oryza sativa and Oryza glaberrima, we find that DNA repa
52 A. thaliana could also be applied to predict Oryza sativa and Saccharomyces cerevisiae essential gene
53 tes, both in the compatible interaction with Oryza sativa and the incompatible interaction with the r
54 tolerance to heat stress was investigated in Oryza sativa and two wild rice species, Oryza meridional
55 es in the Arabidopsis thaliana, Zea mays and Oryza sativa anther development pathways shows that anth
56 s designed a model to predict methylation in Oryza sativa based on genomic sequence features and gene
59 ed transcriptional regulatory networks (i.e. ORYZA SATIVA DEHYDRATION-RESPONSIVE ELEMENT BINDING PROT
61 From a library of 400 semi-randomly mutated Oryza sativa FNR, the top hit enabled a 60 % increase in
62 e were able to improve the annotation of the Oryza sativa genome compared to using the standard MAKER
63 tion of genetic variants across the complete Oryza sativa genome, using the 40 million single nucleot
64 we report that RNAi-mediated suppression of Oryza sativa GRXS17 (OsGRXS17) improved drought toleranc
67 lag leaves of wild-type and transgenic rice (Oryza sativa japonica 'Kitaake') plants expressing ISOPE
69 metabolites in mature seeds of a wide panel Oryza sativa japonica and indica cultivars, revealing co
71 e canopies of a high-yielding rice cultivar (Oryza sativa L. cv. Takanari) with a common cultivar (cv
73 termined the crystal structures of DHAR from Oryza sativa L. japonica (OsDHAR) in the native, ascorba
74 f arsenic, in the rhizosphere of Californian Oryza sativa L. variety M206, grown on Californian paddy
76 icum aestivum L.), maize (Zea may L.), rice (Oryza sativa L.) and sorghum (Sorghum bicolor (L.) Moenc
77 and accumulation by two staple crops, rice (Oryza sativa L.) and wheat (Triticum aestivum L.), and e
78 A new resequencing analysis of weedy rice (Oryza sativa L.) biotypes illuminates distinct evolution
79 ice is not of the same origin as Asian rice (Oryza sativa L.) but rather is an entirely different spe
80 crop species closely related to Asian rice (Oryza sativa L.) but was independently domesticated in W
84 otosynthate allocation to the grain in rice (Oryza sativa L.) has been identified as an effective str
85 nd an interesting model monocot plant, rice (Oryza sativa L.) has recently received attention from mo
91 d larger bulk particles (BPs) in rice plant (Oryza sativa L.) tissues was evaluated using three ortho
93 ore relevant in inbred species such as rice (Oryza sativa L.), which are effectively haploid, allowin
97 ere, a series of expression vectors based on Oryza sativa MIR390 (OsMIR390) precursor was developed f
98 that in rice, transcript level of OsamiR395 (Oryza sativa miR395) increased under sulfate deficiency
99 TION-RESPONSIVE ELEMENT BINDING PROTEIN1 and ORYZA SATIVA No Apical Meristem, Arabidopsis Transcripti
101 es in Arabidopsis (Arabidopsis thaliana) and Oryza sativa revealed that several homologs of the candi
104 expanded the expression domain of the rice (Oryza sativa ssp japonica) OsSHR2 gene, which we show is
105 d young leaf tissues were extracted from the Oryza sativa ssp. indica cv. MR219 and sequenced using I
107 e of five calmodulins known to be present in Oryza sativa that relays the increase of cytosolic [Ca(2
108 ublished data from S. bicolor, Zea mays, and Oryza sativa to identify a small suite of transcription
113 most devastating disease of cultivated rice (Oryza sativa) and a continuing threat to global food sec
114 rative biochemical characterization of rice (Oryza sativa) and Agave tequilana Rca isoforms demonstra
115 class of SUMO protease gene family in rice (Oryza sativa) and demonstrate a critical role for OsOTS1
116 d two different circular plasmids into rice (Oryza sativa) and maize (Zea mays) and analyzed the resu
117 ond to heat stress as demonstrated for rice (Oryza sativa) and maize (Zea mays), suggesting fundament
118 derstand its role in monocots, such as rice (Oryza sativa) and other cereals of agronomic importance.
120 on internode elongation in the monocot rice (Oryza sativa) and petiole elongation in Rumex rosette sp
122 We have cloned a miR395 gene from rice (Oryza sativa) and studied its function in plant nutritio
123 sacchari, a cyst nematode parasite of rice (Oryza sativa) and sugarcane (Saccharum officinarum).
124 l as the antioxidant activity of black rice (Oryza sativa) and to study the stability in relation to
125 e that this phenomenon is conserved in rice (Oryza sativa) and wheat (Triticum aestivum), opening bio
128 how virtual transposable elements from rice (Oryza sativa) are assayed for function in transgenic Ara
132 onstrate that OsARID3, a member of the rice (Oryza sativa) AT-rich Interaction Domain (ARID) family,
133 AL) gene and its potential function in rice (Oryza sativa) based on phylogenetic analyses and transge
134 Arabidopsis (Arabidopsis thaliana) and rice (Oryza sativa) but poorly understood in maize (Zea mays).
135 between abiotic and biotic stresses in rice (Oryza sativa) by performing meta-analyses of microarray
137 lelic variants of wheat and transgenic rice (Oryza sativa) calli demonstrated that XAT catalyzes the
138 ots as well as a related RDN gene from rice (Oryza sativa) can rescue the phenotype of rdn1-2 when ex
139 Loss of DELLA activity in the monocot rice (Oryza sativa) causes complete male sterility, but not in
140 The crystallographic structure of a rice (Oryza sativa) cellulose synthase, OsCesA8, plant-conserv
142 a 'fusion model' for the evolution of rice (Oryza sativa) chromosomes 2 and 3, implying that the gra
143 p94b1 Arabidopsis mutant and wild-type rice (Oryza sativa) conferred increased NaCl tolerance to seed
144 rcum-basmati group of cultivated Asian rice (Oryza sativa) contains many iconic varieties and is wide
149 PCS genes-OsPCS1 and OsPCS2 in indica rice (Oryza sativa) cultivar, the OsPCS2 produces an alternati
150 or the response of five tropical Asian rice (Oryza sativa) cultivars to high temperatures, water defi
152 e regulation of starch biosynthesis in rice (Oryza sativa) endosperm is crucial in tailoring digestib
154 e distinct chromatin states across the rice (Oryza sativa) genome by integrating multiple chromatin m
155 enome-wide gene expression patterns of rice (Oryza sativa) growing in rainfed and irrigated fields du
157 nction of a stress-responsive putative rice (Oryza sativa) histone chaperone of the NAP superfamily:
158 ance was measured in five cultivars of rice (Oryza sativa) in canopy conditions with PAM fluorescence
159 nin histidine kinase (HK) receptors in rice (Oryza sativa) in order to explore the role of cytokinin
160 firmed that people farmed domesticated rice (Oryza sativa) in the interior of Sulawesi Island, Indone
161 mand for premium priced Indian Basmati rice (Oryza sativa) in world commodity market causing fraudule
167 identification of a specific stage in rice (Oryza sativa) leaf development (P3/P4 transition) when p
168 we have isolated and characterized the rice (Oryza sativa) LESION AND LAMINA BENDING (LLB) gene that
170 The dividing cells also revealed two rice (Oryza sativa) microtubule-associated proteins in the phr
172 re, we report that overexpression of a rice (Oryza sativa) miR528 (Osa-miR528) in transgenic creeping
173 In this study, we demonstrated that a rice (Oryza sativa) MULE, Os3378, is capable of excising and r
174 d loss of responsiveness to AMF in the rice (Oryza sativa) mutant hebiba, reflected by the absence of
176 udy, we identified and characterized a rice (Oryza sativa) mutant line containing a 750 bp deletion i
181 tation of the BT1/BT2 ortholog gene in rice (Oryza sativa) OsBT increased NUE by 20% compared to wild
184 etermined the substrate specificity of rice (Oryza sativa) phytaspase by using the positional scannin
185 mospora indica on interactions between rice (Oryza sativa) plants and its root herbivore rice water w
186 sets of wheat (Triticum aestivum) and rice (Oryza sativa) plants as well as a unique virtual data se
190 representing a developing leaf cell of rice (Oryza sativa) primarily derived from the annotations in
195 The mechanism is not found in the rice (Oryza sativa) PSY1 5'UTR, consistent with the prevalence
196 Transcriptome analysis revealed that a rice (Oryza sativa) receptor-like kinase, WALL-ASSOCIATED KINA
198 m sequence of the KNOX gene Oskn2 from rice (Oryza sativa) resulted in isolation of OsGRF3 and OsGRF1
199 Here, we present evidence that the rice (Oryza sativa) RNA-binding protein, RBP-L, like its inter
201 mensional quantification of changes in rice (Oryza sativa) RSA in response to the physical properties
204 t work on the cultivated microbiome in rice (Oryza sativa) shows that a wide diversity of bacterial s
207 ueprint of the genetic architecture of rice (Oryza sativa) stem nonstructural carbohydrates (NSC) at
209 ubisco with higher thermal sensitivity (e.g. Oryza sativa) than others (e.g. Lactuca sativa), intersp
212 of herbicide-resistant (HR) Clearfield rice (Oryza sativa) to control weedy rice has increased in the
213 dicago truncatula, Solanum lycopersicum, and Oryza sativa) to delineate open chromatin regions and tr
215 the node, internode and leaf sheath of rice (Oryza sativa) using synchrotron X-ray fluorescence (S-XR
216 and 12 loci from weedy and cultivated rice (Oryza sativa) were assembled into the same genetic backg
217 LLA during infection of the model crop rice (Oryza sativa) with four different pathogens exhibiting d
218 similar in domain architecture to the rice (Oryza sativa) XA21 Binding Protein3, a defense protein.
220 Here we assayed gene expression in rice (Oryza sativa)(3), and used phenotypic selection analysis
222 piens), fly (Drosophila melanogaster), rice (Oryza sativa), and Arabidopsis (Arabidopsis thaliana) an
223 f proteins from Physcomitrella patens, rice (Oryza sativa), and Arabidopsis (Arabidopsis thaliana) wa
228 lar glucose transporter OsSWEET2b from rice (Oryza sativa), consists of an asymmetrical pair of tripl
230 ,for resistance to bacterial blight of rice (Oryza sativa), is dependent on the effector genes presen
231 hough heat stress reduces seed size in rice (Oryza sativa), little is known about the molecular mecha
232 rization of two type I MADS box TFs in rice (Oryza sativa), MADS78 and MADS79 Transcript abundance of
234 PHO1 uORF in genomes of crops such as rice (Oryza sativa), maize (Zea mays), barley (Hordeum vulgare
235 lysis of AS patterns in B. distachyon, rice (Oryza sativa), maize (Zea mays), sorghum (Sorghum bicolo
236 comparison of the H3K27me3 targets in rice (Oryza sativa), maize, and Arabidopsis thaliana provided
237 erbicide-resistant weeds in crops; (3) rice (Oryza sativa), often infested with feral weedy rice, whi
238 roducing P. stutzeri JGTA-S1 colonizes rice (Oryza sativa), significantly improving its growth, N con
239 eny blocks in Brachypodium distachyon, rice (Oryza sativa), sorghum (Sorghum bicolor) and barley (Hor
243 ruce (Picea abies) and the angiosperms rice (Oryza sativa), tobacco (Nicotiana tabacum), and Arabidop
244 ut of the three homologs identified in rice (Oryza sativa), we have functionally characterized OsbZIP
245 psis (Arabidopsis thaliana) to a crop, rice (Oryza sativa), we identified evolutionarily conserved N-
246 a in humans, Arabidopsis thaliana, and rice (Oryza sativa), we present evidence that methylation stat
247 omes (Arabidopsis [Arabidopsis thaliana] and Oryza sativa), we show that LoReAn outperforms popular a
248 of Arabidopsis (Arabidopsis thaliana), rice (Oryza sativa), worm (Caenorhabditis elegans), and human
273 P) approach from Arabidopsis thaliana toward Oryza sativa, and demonstrate its applicability in a var
274 nterspecific hybrid between cultivated rice, Oryza sativa, and its wild African relative, Oryza longi
275 stinct species such as Arabidopsis thaliana, Oryza sativa, and Physcomitrella patens to examine the d
276 gous chromosomes of Brachypodium distachyon, Oryza sativa, and Sorghum bicolor, whereas, by applying
277 rosophila melanogaste, Arabidopsis thaliana, Oryza sativa, Physcomitrella patens and Chlamydomonas re
278 er, Danio rerio, Homo sapiens, Mus musculus, Oryza sativa, Solanum lycopersicum and Zea mays) are ana
288 ulated Arabidopsis 10) and the monocot rice (Oryza sativa; Gibberellic Acid Stimulated Transcript-Rel
289 and function of an OSCA1 homolog from rice (Oryza sativa; OsOSCA1.2), leading to a model of how it c
290 with one of the two Rca isoforms from rice (Oryza sativa; OsRca-beta) and Rca from other species ada
291 ty on cell interfaces in leaves of C3 (rice [Oryza sativa] and wheat [Triticum aestivum]) and C4 (mai
292 t on Earth, with a handful of species (rice [Oryza sativa], maize [Zea mays], and wheat [Triticum aes
293 om Mutator-like transposable elements in ten Oryza species and the outgroup Leersia perieri, bridging
294 High-quality genomes of 13 closely related Oryza species provide unprecedented opportunities to und
295 analyses using these probes in various wild Oryza species revealed that chromosomes from the AA, BB
296 lineage-specific expansions observed between Oryza species were partly driven by directional selectio
297 ed across 48 accessions representing 11 wild Oryza species, 8 accessions of African cultivated rice,
298 d thousands of putative genes in each of the Oryza species, a large proportion of which have evidence