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1 cellular RISC machinery for inducing target RNA cleavage.
2 ganic phosphate as a nucleophile to catalyze RNA cleavage.
3 s, we defined the molecular requirements for RNA cleavage.
4 ecreted and endocytosed, but fails to induce RNA cleavage.
5 tic tetrad, thereby activating Argonaute for RNA cleavage.
6 ven mRNAs that are resistant to nsp1-induced RNA cleavage.
7 nucleobase general acid strategies to effect RNA cleavage.
8 plays an essential role in the catalysis of RNA cleavage.
9 domains come together to drive Las1-mediated RNA cleavage.
10 ell-shaped pH versus k(cat)/K(M) profile for RNA cleavage.
11 ral elements within BLM that control DNA and RNA cleavage.
12 sses such as transcription, translation, and RNA cleavage.
13 thermophilus, inhibits rather than activates RNA cleavage.
14 RISC assembly, or multiple rounds of target-RNA cleavage.
15 lex (RISC), which catalyzes target messenger RNA cleavage.
16 also associate with Ago2 for guiding target RNA cleavage.
17 ch catalyzes site specific, Pb(2+)-dependent RNA cleavage.
18 common small DNA motif capable of catalyzing RNA cleavage.
19 by a translational mechanism rather than by RNA cleavage.
20 e protein-siRNA complex that mediates target RNA cleavage.
21 entary sequences without inducing detectable RNA cleavage.
22 egies to achieve overall rate enhancement of RNA cleavage.
23 ysis of the wild-type ribozyme to facilitate RNA cleavage.
24 their ability to enhance enzyme catalysis of RNA cleavage.
25 hat are necessary for efficient catalysis of RNA cleavage.
26 which serves as an acid during catalysis of RNA cleavage.
27 mains generating a potential active site for RNA cleavage.
28 nation and, in some cases, cotranscriptional RNA cleavage.
29 tide 320) and that is essential for accurate RNA cleavage.
30 role, to act as an acid during catalysis of RNA cleavage.
31 termediate in factor-induced endonucleolytic RNA cleavage.
32 ar RNase H enzyme for hybridization-directed RNA cleavage.
33 RNA; however, HDAgs are not required for HDV RNA cleavage.
34 y of HDAg is required for the enhancement of RNA cleavage.
35 -through and carry out SII-activated nascent RNA cleavage.
36 e crRNAs for activation of Cas13a collateral RNA cleavage.
37 mination mechanism does not require upstream RNA cleavage.
38 loop (TL), for both nucleotide addition and RNA cleavage.
39 kely catalyze the proton-relay mechanism for RNA cleavage.
40 oximity without involving Argonaute-mediated RNA cleavage.
41 the cleaving site was required for efficient RNA cleavage.
42 mplicated in both sRNA maturation and target RNA cleavage.
43 ich enables rapid recovery from any depth by RNA cleavage.
44 kinetic competition between 1D diffusion and RNA cleavage.
45 HEPN nuclease motif (RphiXXXH) important for RNA cleavage.
46 Very few microRNAs are known to guide RNA cleavage.
47 ed RNAs is probably created by site-specific RNA cleavage.
48 eting, in vitro data have shown crRNA-guided RNA cleavage.
49 allowing piRNAs to spread beyond the site of RNA cleavage.
50 ributes to human diseases via stress-induced RNA cleavage.
51 rted to be the most efficient lanthanide for RNA cleavage.
53 nificantly inhibited human RNase H-catalyzed RNA cleavage (80-90% inhibition) and that a similar inhi
54 entical to that emptied during SII-activated RNA cleavage, a process required for the resumption of e
55 and the distance between the pocket and the RNA cleavage active site in the RNaseIII domain correspo
56 ize the mechanisms of the type I and type II RNA cleavage activities harbored by the Flp (pronounced
57 entiates the weak, intrinsic, piRNA-directed RNA cleavage activities of PIWI proteins, transforming t
58 cific DNA recombinase Flp shows two types of RNA cleavage activities on hybrid DNA-RNA substrates.
59 her and how Cas13 uses its cis- and/or trans-RNA cleavage activities to defend against double-strande
61 utation of lysine to glutamic acid abolished RNA cleavage activity in the absence of a divalent metal
64 We present the evidence for the specific RNA cleavage activity of the engineered catalytic subuni
65 tively catalytic residues, has no detectable RNA cleavage activity on its own but is active upon mixi
66 t neither residue contributes to the type II RNA cleavage activity or to the strand-joining reaction
67 revailing tool, CRISPR-Cas13, has collateral RNA cleavage activity that causes undesirable cytotoxici
68 ently linked catalytic homodimer that had no RNA cleavage activity upon mixing with the structural su
70 cleosome, suggesting that upon inhibition of RNA cleavage activity, RNAPII arrest prevalently occurs
84 protein), presumably by promoting such rapid RNA cleavage and 5' exonucleolytic degradation that PPR1
85 ns C-terminal RNase III domains that mediate RNA cleavage and an N-terminal helicase motif, whose fun
87 ibonuclease Csx1, and showed that subsequent RNA cleavage and dissociation acts as an 'off-switch' fo
88 2a, and Cas13a that mediated multiplexed DNA/RNA cleavage and gene regulation in cell-free systems, b
89 RISPR Cas effector that confers programmable RNA cleavage and has potential applications in RNA inter
90 mes have the potential to perform successive RNA cleavage and joining reactions, resulting in their m
93 d satellite ribozyme catalyses site-specific RNA cleavage and ligation, and serves as an important mo
97 e, which shows the conformation required for RNA cleavage and proximity of the 2'-hydroxyl group to t
102 rent segments of the Rne protein to catalyze RNA cleavage and to bind RNA, we found that the N-termin
105 d Cmr5), each Cmr4 subunit mediates a target RNA cleavage, and Cmr1 and Cmr6 mediate an essential int
106 s and/or targets, HrAgo1 mediates RNA-guided RNA cleavage, and facilitates gene silencing when expres
108 t the functions of the TL and Gre factors in RNA cleavage are conserved in various species, with impo
110 At the pause sites, the burst amplitudes of RNA cleavage are larger than the corresponding reaction
111 consistent with a two-metal ion mechanism of RNA cleavage as previously suggested for a number of pol
112 CV John Cunningham 1/AAG mutant and in vitro RNA cleavage assay demonstrated that MCPIP1 could direct
115 small-angle x-ray scattering and biochemical RNA cleavage assays reveal globally similar structural a
117 a- and XBP1-depleted cells, validation using RNA cleavage assays, and 5' RACE identified the prooncog
120 ch activity was detected and increased total RNA cleavage at high Mg(2+) concentrations sufficient to
123 I, and that loss of EF-RNA interactions upon RNA cleavage at the polyadenylation site triggers disass
124 catalytic core that preferentially catalyzes RNA cleavage at UN dinucleotide junctions (k(obs) = 0.9
125 P23 are essential for early pre-ribosomal (r)RNA cleavages at sites A0, A1/1 and A2/2a in yeast and h
126 se subunits and/or their distinct domains on RNA cleavage, backtracking, and transcription fidelity i
127 Plant microRNAs (miRNAs) typically mediate RNA cleavage, but examples of miRNA-mediated translation
128 t) lacks the stimulatory activity to promote RNA cleavage, but instead efficiently inhibits unstimula
130 ozymes have been identified for catalysis of RNA cleavage by 2'-hydroxyl transesterification, forming
133 eletions of the TL strongly impair intrinsic RNA cleavage by all three RNAPs and eliminate the inters
138 investigated the ability of DNA to catalyze RNA cleavage by hydrolysis rather than transesterificati
140 The value of k(cat)/K(M) for catalysis of RNA cleavage by ribonuclease (RNase) A can exceed 10(9)
142 molecules: the light-regulation of catalytic RNA cleavage by RISC and the light-regulation of seed re
144 a universal bacterial factor that stimulates RNA cleavage by RNA polymerase (RNAP), the functions of
145 This incongruity indicates that catalysis of RNA cleavage by RNase A is limited by the rate of substr
147 eopure ASOs, 3'-SpSpRp, that promotes target RNA cleavage by RNase H1 in vitro and provides a more du
148 ensing, which immediately triggered cellular RNA cleavage by RNase L and arrested host protein synthe
150 sm for Pol I termination: co-transcriptional RNA cleavage by Rnt1 provides an entry site for the 5'-3
152 group I and group II intron RNAs, as well as RNA cleavage by the aI5gamma-derived D135 ribozyme.
157 MS) to monitor the kinetics and products of RNA cleavage, by use of a program designed to mass-match
159 enomena of termination and cotranscriptional RNA cleavage can be uncoupled, and the efficiency of bot
160 ts (5' fragments) produced by miRNA-mediated RNA cleavage can be uridylated in plants and animals.
166 or, and Symplekin, a protein associated with RNA cleavage complexes but also involved in cleavage-ind
167 Measurement of the steady state rates of RNA cleavage confirms that all substrates dissociate slo
168 ide was released from the complex by nascent RNA cleavage, demonstrating that this interaction takes
170 op (TL), to show that the TL is required for RNA cleavage during proofreading of misincorporation eve
173 tary sequence beyond guide-target duplex for RNA cleavage, establishing the functional significance o
174 in vivo reveals a second co-transcriptional RNA cleavage event at T1 which provides Pol I with an al
177 doplasmic reticulum unfolded protein load to RNA cleavage events that culminate in the sequence-speci
178 les of the poly(A) signal, cotranscriptional RNA cleavage events, and 5'-3' exonucleolytic RNA degrad
180 pproach to study the requirements of hairpin RNA cleavage for sugar and base moieties in residues of
181 in Saccharomyces cerevisiae does not rely on RNA cleavage for termination but instead terminates via
182 aG), which serves as the attacking group for RNA cleavage, forms a coplanar base triple with the G264
183 oth the full-length, and all of the possible RNA cleavage fragments that resulted from the combinatio
184 We used an nsp1 mutant, nsp1-CD, lacking the RNA cleavage function, to delineate the mechanism of nsp
186 nucleic acid (LNA) designed to induce target RNA cleavage have been shown to have enhanced potency al
187 ymes capable of catalyzing sequence-specific RNA cleavage have found broad applications in biotechnol
188 templates that are resistant to nsp1-induced RNA cleavage, implying the validity of using nsp1-CD to
189 aPKR, for their ability to effect target PKR RNA cleavage in a cell-free and in an intact cell assay,
191 de a cynosure for understanding catalysis of RNA cleavage in a system of high medicinal relevance.
193 experimental measurement on the spontaneous RNA cleavage in an in vitro evolved ATP aptamer motives
194 promoter complexes whereas GreB facilitates RNA cleavage in arrested elongation complexes (ECs).
195 e angiogenin acts unidirectionally to induce RNA cleavage in astroglia, while the ALS-associated K40I
196 Rho- or Mfd-mediated RNA release or nascent RNA cleavage in backtracked complexes, the regulatory ta
197 her the TL nor GreA can efficiently activate RNA cleavage in certain types of backtracked transcripti
200 In vitro, NoV B2 inhibits Dicer-mediated RNA cleavage in the absence of any other host factors an
202 ex DNA, sequence-selective DNA cleavage, and RNA cleavage in the presence and absence of a metal ion
203 self-cleaving RNA that can be engineered for RNA cleavage in trans and has potential as a therapeutic
205 ed AGOs can mediate a single round of target RNA cleavage in vitro, accessory factors are required fo
207 s with B-Catenin to transactivate STC1 in an RNA cleavage-independent manner, contributing to breast
209 d a 6-base recognition sequence, UACAUA, for RNA cleavage instead of the 5-base sequence, UACAU, for
214 tion as a possibly important intermediate in RNA cleavage, its structure has been captured in various
215 a multi-layered defence that includes target RNA cleavage, licencing of an HD DNA nuclease domain and
216 riety of chemical transformations, including RNA cleavage, ligation, and synthesis, as well as alkyla
217 9, RPP30 and L7Ae-EDTA-Fe) revealed specific RNA cleavages, localizing the binding sites of L7Ae to t
218 ity to down-regulate gene expression through RNA cleavage makes the hammerhead ribozyme a candidate f
220 w that a lincRNA-specific co-transcriptional RNA cleavage mechanism acts to induce premature terminat
221 Biochemical assays support an autonomous RNA cleavage mechanism independent of RNase H1 engagemen
223 cleotide incorporation, sequential rounds of RNA cleavage occurred each time after approximately 6 nu
224 In accord with earlier studies with model RNAs, cleavage occurs only in the presence of manganese
225 ion elongation factor S-II (TFIIS)-dependent RNA cleavage, or as drastic as premature transcription t
226 Furthermore, our analysis showed that the RNA cleavage pathway is also present in human cells but
228 PN nucleases participate in stress-activated RNA cleavage pathways; Las1 plays a fundamental role in
229 ons with RNase H1 as evidenced by changes in RNA cleavage patterns, these were insufficient to improv
231 y cap binding to the PB2 subunit, from which RNA cleavage preferentially occurs at the 12th nt downst
232 into how DNA molecules are able to solve the RNA-cleavage problem, and establishes functional relatio
233 rived from the HIV-1 genome, six predominant RNA cleavage products are found during DNA synthesis cat
234 rast, both intrinsic and TFIIS-induced small RNA cleavage products are very similar when produced fro
235 line, Hey1b, resulted in specific ribosomal RNA cleavage products coinciding with JNK activation.
237 -linked oligoadenylate (2-5A) produces small RNA cleavage products from self-RNA that initiate IFN pr
239 fter WNV infection and the patterns of viral RNA cleavage products generated were similar in both typ
244 he first of their kind in terms of their DNA-RNA cleavage properties, and they may have important bio
245 However, the major function of His119 in RNA cleavage, protonation of the 5'-O leaving group, is
246 apsid-specific antiserum eliminated specific RNA cleavage provides further evidence that the virus ca
249 The hairpin ribozyme catalyzes a reversible RNA cleavage reaction that participates in processing in
250 hepatitis delta virus ribozyme catalyzes an RNA cleavage reaction using a catalytic nucleobase and a
251 site captured the pre-catalytic state of the RNA cleavage reaction, illustrating the unexpected Pb(2+
252 n ribozyme, catalyzes a multistep reversible RNA cleavage reaction, which comprises two structural tr
257 ulate the free energy surface underlying the RNA-cleavage reaction and characterize its mechanism.
260 ns as a riboswitch, with activator-dependent RNA cleavage regulating glmS messenger RNA expression.
262 e contributions of the TL and Gre factors to RNA cleavage reportedly vary between RNAPs from differen
264 quired for crRNA-meditated sequence-specific RNA cleavage, RNA target-dependent non-specific DNA clea
266 However, the two enzymes showed identical RNA cleavage site preferences with an mRNA as substrate.
267 used to define transcription initiation and RNA cleavage sites associated with all polyadenylated vi
269 ructural explanation of accessibility of the RNA cleavage sites to the peptide with adoption of an 'i
271 tic activity and deep mutational scanning of RNA cleavage sites-that reveal distinct rules governing
275 der oligomer species that possesses distinct RNA cleavage specificity from that of previously charact
277 ic activities, including DNA polymerization, RNA cleavage, strand transfer, and strand displacement s
278 of the FL and TL mutations on GreA-assisted RNA cleavage suggest that the FL-dependent TL transition
279 the resulting enzymes are more efficient at RNA cleavage than most Mg(2+)-dependent nucleic acid enz
281 omplete complementarity, resulting in target RNA cleavage that is a critical step for target silencin
284 hough it is dispensable for 5'-end-dependent RNA cleavage, the carboxy-terminal half of RNase E signi
285 to these sites, where they induce efficient RNA cleavage, thereby revealing compact RNA 3-D modules.
286 from shallow backtracks by 1D diffusion, use RNA cleavage to recover from intermediary depths, and ar
287 in RNA interference (RNAi) pathways to guide RNA cleavage, translational repression, or methylation o
288 ities of cross-linked ribozymes to carry out RNA cleavage under single turnover conditions were compa
289 ze of Cas13 effectors and their non-specific RNA cleavage upon target activation limit the adeno-asso
290 e describe the molecular mechanism of target RNA cleavage using affinity-purified minimal RISC from h
292 The specific role of Ago2 in guiding target RNA cleavage was confirmed independently by siRNA-based
294 by its ability to induce an endonucleolytic RNA cleavage, was separable from its translation inhibit
295 hat might be responsible for double-stranded RNA cleavage, we analysed csp41a and csp41b knock-out mu
296 Using nucleotide modifications that inhibit RNA cleavage, we show that R- but not L-sshRNAs require
297 While Mg(2+) enables eEndoV to catalyze RNA cleavage, we show that similar levels of Ca(2+) inst
299 rovements in efficiency at sequence-specific RNA cleavage when compared with analogous o-phenanthroli
300 ontaining complex directs multiple rounds of RNA cleavage, which explains the remarkable efficiency o