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1 A functionality and its interaction with the RNA polymerase.
2 erase II and subunits RpoB-RpoC of bacterial RNA polymerase.
3 n of transcripts as soon as they emerge from RNA polymerase.
4 essential gene encoding the beta-subunit of RNA polymerase.
5 cells using a cytidine deaminase fused to T7 RNA polymerase.
6 hances contacts between the DNA backbone and RNA polymerase.
7 ound middle promoters and recruits the phage RNA polymerase.
8 nt harboring a mutation in the RNA-dependent RNA polymerase.
9 s characterized by low expression and poised RNA-polymerase.
10 ast majority of the genome is transcribed by RNA polymerases.
11 izes with complementary DNA templates behind RNA polymerases.
12 when misincorporated by viral RNA-dependent RNA polymerases.
13 re dependent on RNA Pol IV and RNA-DEPENDENT RNA POLYMERASE 2 (RDR2) and establish DNA methylation at
14 acetylation, and prevents the positioning of RNA Polymerase 2 at promoters impeding transcription ini
16 ing are instead processed into RNA-dependent RNA polymerase 6-dependent small RNAs, resulting in thei
20 and-mouth disease virus (FMDV) RNA-dependent RNA polymerase allows FMDV to exhibit high genetic diver
22 ing-like domain containing the RNA-dependent RNA polymerase and an appendage of globular domains cont
23 zation of AceR to enable interaction between RNA polymerase and promoter DNA were also observed follo
26 vealed how RNA slips on template DNA and how RNA polymerase and template DNA determine length of reit
27 sed that this is due to physical coupling of RNA polymerase and the lead ribosome on nascent mRNA, an
28 ealed RpoD-dependent promoter selectivity by RNA polymerase and the requirement of specific metal cof
29 nding of the functional relationship between RNA polymerase and the ribosome as well as the basis of
30 ll, both kinetic discrepancy between DNA and RNA polymerases and cellular concentration discrepancy b
31 airs that are compatible with native DNA and RNA polymerases and the ribosome, we have expanded the g
33 enomic RNA, nucleoprotein, the RNA-dependent RNA polymerase, and a polymerase cofactor, the phosphopr
35 heories of labour division between the major RNA polymerases, and identify nucleolar Pol II as a majo
37 We describe the well-known interactions with RNA polymerase as well as a broader range of cellular ta
39 Further analysis and comparison with other RNA polymerases at different stages suggest the structur
40 lead to the arrest of transcription through RNA polymerase backtracking, which interferes with repli
42 esponsive riboswitches and the orthogonal T7 RNA polymerase, biochemical reactions needed for in vivo
43 e the rate of transcription by DNA-dependent RNA polymerases, but the influence of DNA sequence on tr
46 also known as 2019-nCoV) RdRp (RNA-dependent RNA polymerase) coding sequence, achieving a detection l
47 that gp14, termed here as Drc (ssDNA-binding RNA Polymerase Cofactor), preferentially binds single-st
48 ective, Drc interacts with the phage-encoded RNA Polymerase complex (RNAPII), implying a functional r
49 tations reduce protein affinities within the RNA polymerase complex, subsequently reducing nucleic ac
50 elical ribonucleocapsid and an RNA-dependent RNA polymerase composed of a catalytic subunit, the L pr
52 d MvaU leads to a striking redistribution of RNA polymerase containing sigma(70) to genomic regions v
53 nd UPS-dependent degradation of rice NUCLEAR RNA POLYMERASE D1a (OsNRPD1a), one of two orthologs of t
54 g that the total output of the ribosomes and RNA polymerases described by data are not sufficient for
57 e of a functional E. coli trxA allele and T7 RNA polymerase-driven expression but is independent of t
59 the X-ray crystal structure of the bacterial RNA polymerase engaged in reiterative transcription from
60 d and replicated by the viral heterotrimeric RNA polymerase (FluPol) in the context of viral ribonucl
61 fluenza viruses encode a viral RNA-dependent RNA polymerase (FluPol), which is responsible for transc
62 licated and transcribed by the RNA-dependent RNA polymerase holoenzyme (subunits nsp7/nsp8(2)/nsp12)
64 t regions, preventing them from sequestering RNA polymerase; however, it is not known whether MvaT an
65 cription elongation properties of eukaryotic RNA polymerase I (Pol I) from Saccharomyces cerevisiae h
68 revisiae that plays dual roles in activating RNA polymerase I (Pol I) transcription and repression of
70 sage as a specific chemical genetic probe of RNA polymerase I function is challenging to interpret.
73 ocalizes to the nucleoli and associates with RNA polymerase I transcribed ribosomal RNA gene, Rn45s.
74 ate CX-5461, the first-in-class inhibitor of RNA polymerase I transcription of ribosomal RNA genes (r
77 nd found that H2A.Z eviction is dependent on RNA Polymerase II (Pol II) and the Kin28/Cdk7 kinase, wh
79 gene expression or transcription factor and RNA polymerase II (Pol II) association with viral DNA pr
80 tacc-seq), we investigated the landscapes of RNA polymerase II (Pol II) binding in mouse embryos.
81 ylates the carboxyl-terminal domain (CTD) of RNA polymerase II (pol II) but its roles in transcriptio
84 inal domain (CTD) of the RPB1 subunit of the RNA polymerase II (Pol II) has been revived in recent ye
87 nscription, and promoter-proximal pausing of RNA polymerase II (Pol II) is a critical step in transcr
90 t its disruption manifests as a reduction of RNA polymerase II (Pol II) occupancy downstream of trans
92 depends on many factors that together direct RNA polymerase II (pol II) through the different stages
93 nd that prp5 alleles decrease recruitment of RNA polymerase II (Pol II) to an intron-containing gene,
95 scription factor that stimulates the rate of RNA polymerase II (Pol II) transcription elongation in v
96 to a lesser extent, exon-targeted ASOs cause RNA polymerase II (Pol II) transcription termination in
97 ribed from > 15,000 discrete genomic loci by RNA polymerase II (Pol II), resulting in 28 nt short-cap
98 on, resulting in degradation of the residual RNA polymerase II (Pol II)-associated RNA by XRN2 and di
105 ore increases Mediator-driven recruitment of RNA polymerase II (RNA Pol II) to promoters and enhancer
106 sphorylation within the C-terminal domain of RNA polymerase II (RNAP II) and in the recruitment of th
107 Here, we report that ATXN3 associates with RNA polymerase II (RNAP II) and the classical nonhomolog
108 le 1-beta-D-ribofuranoside (DRB), to measure RNA polymerase II (RNAPII) elongation rates in vivo, a t
112 elongation factors associate with elongating RNA polymerase II (RNAPII) to control the efficiency of
115 e 2 (Ser2) of the carboxy-terminal domain of RNA polymerase II (RNAPII), which is initiated when RNAP
121 RNA methylation machinery, the NuRD complex, RNA polymerase II and factors involved in the regulation
122 mentalization of the gene-control machinery, RNA polymerase II and its cofactors, within biomolecular
123 ly the method to subunits Rpb1-Rpb2 of yeast RNA polymerase II and subunits RpoB-RpoC of bacterial RN
125 AM1 promoter resulted in graded RelA/p65 and RNA polymerase II binding that gave rise to a distributi
127 anscription factor II H (TFIIH) it activates RNA polymerase II by hyperphosphorylation of its C-termi
130 ologous end-joining pathway factor, that the RNA polymerase II component ELOF1 modulates the response
131 s influenced by the Thr4 phospho-site in the RNA polymerase II CTD and the 3' processing/termination
137 The molecular process of transcription by RNA Polymerase II is highly conserved among eukaryotes (
140 demonstrate that PTEN modulates genome-wide RNA Polymerase II occupancy in cells undergoing glucose
142 we report that widespread promoter-proximal RNA polymerase II pausing in resting macrophages is mark
144 ve historically focused on events leading to RNA polymerase II recruitment and transcription initiati
146 ogy was found across the range of eukaryotic RNA polymerase II subunits and their associated basal tr
148 14 (H3K14ac) facilitates the processivity of RNA polymerase II to maintain the high expression of key
149 d link the SnRK2.6-mediated ABA signaling to RNA polymerase II to promote immediate transcriptional r
151 that TOE1 promotes maturation of all regular RNA polymerase II transcribed snRNAs of the major and mi
152 and Drosophila cells, splicing occurs after RNA polymerase II transcribes several kilobases of pre-m
153 xpressed from an intron that is generated by RNA polymerase II transcribing the circular viral genome
155 e specifically associated with initiation of RNA Polymerase II transcription of highly expressed gene
157 is provided by physical interaction with the RNA polymerase II transcriptional machinery (chromatin r
158 NCBP2), associates with the nascent 5'cap of RNA polymerase II transcripts and impacts RNA fate decis
159 ates distinct isoforms of mRNAs and/or other RNA polymerase II transcripts with different 3'UTR lengt
160 ple-arise from Bre1 and Rad6 travelling with RNA polymerase II(2), the mechanism of H2B ubiquitinatio
161 co-binding of the tumor suppressor BRCA1 and RNA polymerase II, a well-known transcriptional pair in
162 anscriptional machinery, including NCOA3 and RNA polymerase II, but does not alter AR binding itself.
163 eport that zinc finger protein ZPR1 binds to RNA polymerase II, interacts in vivo with SMN locus and
165 F1 in CSC maintenance was independent of its RNA polymerase II-associated factor 1 complex component
166 Alpha-satellite expression occurs through RNA polymerase II-dependent transcription, but does not
176 f serine-2 in the C-terminal domain (CTD) of RNA-polymerase II (Pol II), and reduces the expression o
178 rucial to the regulation of transcription by RNA-polymerase II, via its interaction with the positive
180 rt interspersed nuclear elements (SINEs) are RNA polymerase III (RNAPIII)-transcribed, retrotransposa
181 ing a central role of Alu elements (AEs) and RNA polymerase III transcription factor C (TFIIIC) in st
185 is a non-canonical form of RNA synthesis by RNA polymerase in which a ribonucleotide specified by a
186 cription initiation factors of mitochondrial RNA polymerases in Saccharomyces cerevisiae and humans,
187 h the efficiency with which Escherichia coli RNA polymerase incorporates dinucleoside polyphosphates
188 lls grown in the presence and absence of the RNA polymerase inhibitor rifampicin, we identify hundred
194 rate that while binding and initiation of T7 RNA polymerase is unchanged, the efficiency of elongatio
195 The enzyme responsible for transcription, RNA polymerase, is conserved in general architecture and
196 B. burgdorferi 6S RNA (Bb6S RNA) binds to RNA polymerase, is expressed independent of growth phase
197 dopsis (Arabidopsis thaliana), DNA-dependent RNA polymerase IV (Pol IV) is required for the formation
198 ogs of the largest subunit of plant-specific RNA polymerase IV (Pol IV), which is required for RNA-di
201 After detachment of NusG and clamp opening, RNA polymerase loses its grip on the RNA:DNA hybrid and
202 A de novo, all organisms require primase, an RNA polymerase making short RNA primers which are then e
203 arget genes, alpha-tubulin and mitochondrial RNA polymerase (mtpol), were significantly increased whe
209 is focused on either the viral RNA-dependent RNA polymerase or the main viral protease, 3CL(pro) 3CL(
210 f ssDNA produced by transcriptionally active RNA polymerases or other processes in situ using as few
211 ad, the translating ribosome actively pushes RNA polymerase out of the backtracked state, thereby rea
213 transcriptional machinery, and facilitating RNA polymerase pause-release to regulate gene expression
214 T, stimulates transcriptional elongation by RNA polymerase (Pol) II and regulates cell growth and di
215 f trimethyl H3K4 and phosphorylated forms of RNA polymerase (Pol) II at the promoter and gene body.
222 express at least three nuclear DNA-dependent RNA polymerases (Pols) responsible for synthesizing all
225 The structure reveals that the RNA dependent RNA polymerase (RdRp) and capping (Cap) domains of L int
226 in the thumb subdomain of the RNA-dependent RNA polymerase (RdRp) and the methyltransferase (MTase)
227 the NS5 methyltransferase and RNA-dependent RNA polymerase (RdRP) domains form a conserved interdoma
230 mice expressing a picornavirus RNA-dependent RNA polymerase (RdRP) outside the viral context (RdRP mi
233 mes that typically encode only RNA-dependent RNA polymerase (RdRP), capping enzyme and capsid protein
234 e and the L protein, which has RNA-dependent RNA polymerase (RdRp), GDP polyribonucleotidyltransferas
235 tains motifs representative of RNA-dependent RNA polymerase (RdRp), whereas the dsRNA2 ORF sequence s
236 ARS-CoV-2 depends on the viral RNA-dependent RNA polymerase (RdRp), which is the likely target of the
237 s low levels of a picornaviral RNA-dependent RNA polymerase (RdRP), which synthesizes double-stranded
240 tease (3CL(pro)) and the nsp12 RNA-dependent RNA-polymerase (RdRp) are the best characterized SARS-Co
242 delity SARS-CoV and SARS-CoV-2 RNA-dependent RNA polymerases (RdRps), serving as an immediate polymer
246 atically and accurately measure the apparent RNA-polymerase resource budget will enable researchers t
247 virus replication and cellular RNA-dependent RNA polymerases responsible for gene silencing amplifica
248 in virus-derived siRNAs: viral RNA-dependent RNA polymerases responsible for virus replication and ce
249 to have descended would have depended on an RNA polymerase ribozyme to copy functional RNA molecules
251 onditions and components on bacteriophage T7 RNA polymerase (RNAP) activity using a common quantitati
252 is six-subunit (2alphabetabeta'omegaepsilon) RNA Polymerase (RNAP) core enzyme, sigma(A), a promoter
253 unveils that RNA transcript release precedes RNA polymerase (RNAP) dissociation from the DNA template
255 the additional initiation factor Bdp1 in the RNA polymerase (RNAP) III system, however, remained elus
256 S) as a mechanism for organizing clusters of RNA polymerase (RNAP) in Escherichia coli Using fluoresc
257 ces have enabled single-cell measurements of RNA polymerase (RNAP) molecules engaged in the process o
259 ermination factor playing essential roles in RNA polymerase (RNAP) recycling, gene regulation, and ge
260 flagella-specific sigma factor that targets RNA polymerase (RNAP) to control the expression of flage
262 in vitro transcription system with purified RNA polymerase (RNAP) to investigate rRNA synthesis in t
264 ly associate and kinetically coordinate with RNA polymerase (RNAP)(3-11), forming a signal-integratio
265 the beta and beta' subunits of multi-subunit RNA polymerase (RNAP), a high-resolution phylogenetic ma
266 ise transcription and block RNA synthesis by RNA polymerase (RNAP), leading to subsequent recruitment
268 important DNA repair mechanism that removes RNA polymerase (RNAP)-stalling DNA damage from the trans
269 e coupled processes in which the movement of RNA polymerase (RNAP)-synthesizing messenger RNA (mRNA)
281 yotes, gene expression is performed by three RNA polymerases that are targeted to promoters by molecu
284 ic counterparts by utilizing multifunctional RNA polymerases to replicate entire viral genomes and tr
285 d the contribution of cellular RNA-dependent RNA polymerases to the generation of mutations in virus-
286 dy various motors such as helicases, DNA and RNA polymerases, topoisomerases, nucleosome remodelers,
290 ng the activities of essential, multisubunit RNA polymerase transcription elongation complexes (TECs)
291 contacts NusA, NusG, and multiple regions of RNA polymerase, trapping and locally unwinding proximal
296 e gene silencing by recruiting RNA-dependent RNA polymerases, which use pUG-tailed RNAs (pUG RNAs) as
297 and bioaerosols that produce allergies have RNA polymerase with a propensity to generate RNA gaps, t
298 complex formation by blocking interaction of RNA polymerase with the promoter -10 element, while not
299 tic parameters of cellular and viral DNA and RNA polymerases with respect to cellular levels of their
300 n deflection of distal upstream DNA over the RNA polymerase zinc-binding domain, NusA rotates underne