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1 the recruitment of chromatin remodelers and RNA polymerase II.
2 A repair, mRNA processing, and regulation of RNA polymerase II.
3 hunt for factors that regulate elongation by RNA polymerase II.
4 y dephosphorylating the C-terminal domain of RNA polymerase II.
5 on of most, if not all, genes transcribed by RNA Polymerase II.
6 RNP interacts with transcriptionally engaged RNA polymerase II.
7 xygenase-1 locus and promotes recruitment of RNA polymerase II.
8 n factors and transcriptional machinery like RNA Polymerase II.
9 n chromatin interaction networks mediated by RNA polymerase II.
10 ly related to the C-terminal domain (CTD) of RNA polymerase II.
11 cription by linking transcription factors to RNA polymerase II.
12 the biochemical analysis of transcription by RNA polymerase II.
13 o the expression of all genes transcribed by RNA polymerase II.
14 regulatory element for genes transcribed by RNA polymerase II.
15 and in the transcription of coding genes by RNA polymerase II.
16 st cancer cells by increasing recruitment of RNA polymerase II.
17 ectly stimulates transcription elongation by RNA polymerase II.
18 1 (DCL1) and Hyponastic Leaves 1 (HYL1) with RNA Polymerase II.
19 and operates by recruiting and/or initiating RNA Polymerase II.
20 s interactions with the C-terminal domain of RNA polymerase II.
21 y modulating the association of Mediator and RNA polymerase II.
22 ex, which regulates transcription pausing of RNA-polymerase II.
23 ple-arise from Bre1 and Rad6 travelling with RNA polymerase II(2), the mechanism of H2B ubiquitinatio
24 co-binding of the tumor suppressor BRCA1 and RNA polymerase II, a well-known transcriptional pair in
25 nhancers and super-enhancers, and leading to RNA polymerase II activation and expression of downstrea
27 ty controls transcription factor binding and RNA polymerase II activity, validating a mechanism propo
28 reversible association and disassociation of RNA polymerase II and associated co-factors from genes a
29 at transcriptionally active regions bound by RNA polymerase II and Brahma, its recruitment to the tra
30 RNA methylation machinery, the NuRD complex, RNA polymerase II and factors involved in the regulation
31 einitiation complex (PIC), which consists of RNA polymerase II and general transcription factors.
32 omain (CTD) of the largest subunit (RPB1) of RNA polymerase II and is essential for the transition fr
33 mentalization of the gene-control machinery, RNA polymerase II and its cofactors, within biomolecular
34 lex critical for transcription initiation by RNA polymerase II and nucleotide excision DNA repair.
36 osphorylating the carboxy-terminal domain of RNA polymerase II and selectively affects the expression
37 ly the method to subunits Rpb1-Rpb2 of yeast RNA polymerase II and subunits RpoB-RpoC of bacterial RN
38 ntified transcriptome-wide binding sites for RNA polymerase II and the exosome cofactors Mtr4 (TRAMP
39 through chromatin looping and by recruiting RNA polymerase II and the histone-code modifiers p300 an
41 demonstrate interaction between MTA and both RNA Polymerase II and TOUGH (TGH), a plant protein neede
42 CUT&Tag by profiling histone modifications, RNA Polymerase II and transcription factors on low cell
43 from HS2 of major transcription factors and RNA Polymerase II, and consequently in loss of factors a
44 art site of genes occupied by high levels of RNA polymerase II, and terminates at their polyadenylati
45 esized at DNA double-strand breaks (DSBs) by RNA polymerase II are necessary for DNA-damage-response
46 ive viral transcription by focal assembly of RNA polymerase II around Kaposi's sarcoma-associated her
48 small nucleolar RNAs that are transcribed by RNA Polymerase II as precursors, and whose 5' and 3' end
49 plex (PAF1C), a transcriptional regulator of RNA polymerase II, as a suppressor of G4C2-associated to
50 One of the transcription factors, the PAF1C (RNA polymerase II associated factor 1 complex) is report
53 function of VIP proteins, components of the RNA polymerase II-associated factor 1 complex (Paf1c).
54 F1 in CSC maintenance was independent of its RNA polymerase II-associated factor 1 complex component
56 AM1 promoter resulted in graded RelA/p65 and RNA polymerase II binding that gave rise to a distributi
57 ty of the epidermis, HNRNPK is necessary for RNA Polymerase II binding to proliferation/self-renewal
60 anscriptional machinery, including NCOA3 and RNA polymerase II, but does not alter AR binding itself.
61 anscription factor II H (TFIIH) it activates RNA polymerase II by hyperphosphorylation of its C-termi
62 In addition, through its interaction with RNA Polymerase II C-terminal domain (CTD) and affecting
64 res conversion of an arginine residue in the RNA polymerase II C-terminal domain (CTD) to citrulline,
67 that both enhancer classes are enriched for RNA Polymerase II, CBP, and architectural proteins but t
68 nhancers and other cis-regulatory regions by RNA polymerase II chromatin interaction analysis by pair
71 0454) disrupts BRD4 binding to the NF-kappaB-RNA polymerase II complex and inhibits its histone acety
72 ologous end-joining pathway factor, that the RNA polymerase II component ELOF1 modulates the response
74 s influenced by the Thr4 phospho-site in the RNA polymerase II CTD and the 3' processing/termination
75 the structure and function of SSU72 homolog, RNA polymerase II CTD phosphatase (Ssu72, from Drosophil
76 Alpha-satellite expression occurs through RNA polymerase II-dependent transcription, but does not
82 MeCP2 binding to methylated miRNA loci halts RNA polymerase II elongation, leading to enhanced proces
83 this region exhibited basal eRNA production, RNA polymerase II enrichment, and looping to the TSS, pl
85 We hypothesize that waves of slowed-down RNA polymerase II formed behind these sites travel backw
87 lex, which plays key roles in the release of RNA polymerase II from promoter-proximal pausing and in
89 R 4b (TAF4b), which encodes a subunit of the RNA polymerase II general transcription factor TFIID.
90 n addition to phosphodiester bond formation, RNA polymerase II has an RNA endonuclease activity, stim
91 n cryo-electron microscopy map of a Mediator-RNA polymerase II holoenzyme reveals that changes in the
96 r1 phosphorylation causes an accumulation of RNA polymerase II in the promoter region as detected by
102 eport that zinc finger protein ZPR1 binds to RNA polymerase II, interacts in vivo with SMN locus and
103 The molecular process of transcription by RNA Polymerase II is highly conserved among eukaryotes (
104 matin occupancy of serine 2-unphosphorylated RNA polymerase II is increased, and that of topoisomeras
106 ent recruitment of transcription factors and RNA polymerase II leads to conventional patterns of dive
110 igned with its capacity to primarily augment RNA polymerase II-mediated transcriptional elongation, b
111 ependent kinase (Cdk8) is a component of the RNA polymerase II Mediator complex that predominantly re
113 trong divergent transcription, together with RNA Polymerase II occupancy and an increase in DNA acces
114 heat shock they display increased HSF-1 and RNA polymerase II occupancy and up-regulation of nearby
115 We further show that KDM2 proteins shape RNA Polymerase II occupancy but not chromatin accessibil
116 demonstrate that PTEN modulates genome-wide RNA Polymerase II occupancy in cells undergoing glucose
121 , we show that CDK8 kinase activity promotes RNA polymerase II pause release in response to interfero
122 we report that widespread promoter-proximal RNA polymerase II pausing in resting macrophages is mark
125 tiotemporal relationship between R-loops and RNA polymerase II pausing/pause release, as well as link
126 eads to CDK7 phosphorylation, which promotes RNA Polymerase II phosphorylation and transcription.
127 ib, THZ1, and LDC4297 lead to a reduction in RNA Polymerase II phosphorylation on the SLC2A1 promoter
128 Surprisingly, NXF1 downregulation results in RNA polymerase II (Pol II) accumulation at the 3' end of
132 nd found that H2A.Z eviction is dependent on RNA Polymerase II (Pol II) and the Kin28/Cdk7 kinase, wh
135 gene expression or transcription factor and RNA polymerase II (Pol II) association with viral DNA pr
136 al mammary cells form upon release of paused RNA polymerase II (Pol II) at promoters, 5' splice sites
137 ription of eukaryotic mRNA-encoding genes by RNA polymerase II (Pol II) begins with assembly of the p
138 tacc-seq), we investigated the landscapes of RNA polymerase II (Pol II) binding in mouse embryos.
139 The vRNAP core enzyme resembles eukaryotic RNA polymerase II (Pol II) but also reveals many virus-s
140 ylates the carboxyl-terminal domain (CTD) of RNA polymerase II (pol II) but its roles in transcriptio
141 te the degradation of Rpb1, a subunit of the RNA polymerase II (Pol II) complex, and therefore hamper
144 After synthesis of a short nascent RNA, RNA polymerase II (pol II) dissociates general transcrip
148 nsation, KAS-seq uncovers a rapid release of RNA polymerase II (Pol II) from a group of promoters.
150 inal domain (CTD) of the RPB1 subunit of the RNA polymerase II (Pol II) has been revived in recent ye
151 either T7 RNA polymerase (T7 RNAP) or human RNA polymerase II (pol II) have inhibitory and mutagenic
152 ps in gene regulation involve the pausing of RNA polymerase II (Pol II) in early elongation, and the
156 nscription, and promoter-proximal pausing of RNA polymerase II (Pol II) is a critical step in transcr
160 cates within the nucleus coopting the host's RNA Polymerase II (Pol II) machinery for production of v
162 esent mechanical and energetic barriers that RNA Polymerase II (Pol II) must overcome during transcri
163 t its disruption manifests as a reduction of RNA polymerase II (Pol II) occupancy downstream of trans
164 minal domain (CTD) of the largest subunit of RNA polymerase II (Pol II) orchestrates dynamic recruitm
165 istone H2B ubiquitination (H2Bub) facilitate RNA polymerase II (Pol II) passage through chromatin, ye
166 al regions wherein transcriptionally engaged RNA polymerase II (Pol II) pauses before proceeding towa
172 at stimuli predominantly affect the rates of RNA polymerase II (Pol II) recruitment and polymerase re
174 iption is regulated at many steps, including RNA polymerase II (Pol II) recruitment, transcription in
175 C-terminal heptapeptide repeat domain of the RNA polymerase II (Pol II) subunit RPB1, which is an imp
176 depends on many factors that together direct RNA polymerase II (pol II) through the different stages
177 nd that prp5 alleles decrease recruitment of RNA polymerase II (Pol II) to an intron-containing gene,
178 tory step in gene expression, which requires RNA polymerase II (pol II) to escape promoter proximal p
182 NA-binding motif protein 7 (RBM7) stimulates RNA polymerase II (Pol II) transcription and promotes ce
183 factor Paf1C regulates several stages of the RNA polymerase II (Pol II) transcription cycle, although
185 scription factor that stimulates the rate of RNA polymerase II (Pol II) transcription elongation in v
188 to a lesser extent, exon-targeted ASOs cause RNA polymerase II (Pol II) transcription termination in
189 ption involves the complex interplay between RNA polymerase II (Pol II), regulatory factors (RFs), an
190 ribed from > 15,000 discrete genomic loci by RNA polymerase II (Pol II), resulting in 28 nt short-cap
191 ociation between influenza RdRP and cellular RNA polymerase II (Pol II), which is the source of nasce
192 we show that hepatocyte-specific ablation of RNA polymerase II (Pol II)-associated Gdown1 leads to do
193 on, resulting in degradation of the residual RNA polymerase II (Pol II)-associated RNA by XRN2 and di
200 f serine-2 in the C-terminal domain (CTD) of RNA-polymerase II (Pol II), and reduces the expression o
202 functional promoters that include a complete RNA polymerase II preinitiation complex, MED1 and CDK9.
203 modifications and RNA methylation, regulate RNA polymerase II processivity, co-transcriptional splic
205 the best-studied cis-regulatory elements in RNA polymerase II promoters and enhancers have variable
207 sses such as transcription factor occupancy, RNA polymerase II recruitment and initiation, nascent tr
208 ve historically focused on events leading to RNA polymerase II recruitment and transcription initiati
209 romatin marks were associated with increased RNA polymerase II recruitment to the ATF3 promoter, a sy
212 nd 13 phosphorylate the C-terminal domain of RNA polymerase II, regulating transcription and co-trans
213 ar multisubunit RNA polymerases IV and V are RNA Polymerase II-related enzymes that synthesize non-co
214 ing of tissues to the mechanistic control of RNA polymerase II remains a long-term goal of developmen
220 ore increases Mediator-driven recruitment of RNA polymerase II (RNA Pol II) to promoters and enhancer
221 s with transcription factor GATA2 to promote RNA polymerase II (RNA-POL-II) recruitment and activate
222 sphorylation within the C-terminal domain of RNA polymerase II (RNAP II) and in the recruitment of th
223 Here, we report that ATXN3 associates with RNA polymerase II (RNAP II) and the classical nonhomolog
224 of key residues at the C-terminal domain of RNA polymerase II (RNAP2-CTD) coordinates transcription,
228 le 1-beta-D-ribofuranoside (DRB), to measure RNA polymerase II (RNAPII) elongation rates in vivo, a t
229 rosine kinase c-Abl/ABL1 causes formation of RNA polymerase II (RNAPII) foci, predominantly phosphory
231 nitiation and regulation of transcription by RNA polymerase II (RNAPII) in eukaryotes rely on the tra
233 transcript elongation of subsets of genes by RNA polymerase II (RNAPII) in the chromatin context.
237 elongation factors associate with elongating RNA polymerase II (RNAPII) to control the efficiency of
239 e that scaling relies on the coordination of RNA polymerase II (RNAPII) transcription initiation rate
242 sphorylated carboxy-terminal domain (CTD) of RNA polymerase II (RNAPII) using RGG motifs in its low-c
243 tant ulp2 cells show impaired association of RNA polymerase II (RNAPII) with, and diminished expressi
244 inase 9 (Cdk9) occur during transcription by RNA polymerase II (RNAPII), and are mutually dependent i
245 scription-coupled DNA repair, degradation of RNA polymerase II (RNAPII), and genome-wide transcriptio
246 e 2 (Ser2) of the carboxy-terminal domain of RNA polymerase II (RNAPII), which is initiated when RNAP
252 inding complex (CBC) binds to the 5' caps of RNA polymerase II (RNAPII)-synthesized transcripts and s
259 n assays (examining histones, accessibility, RNA polymerase II [RNAPII], and transcription factor bin
261 e, we integrate mRNA sequencing, genome-wide RNA polymerase II (RNPII), chromatin immunoprecipitation
262 horibosyltransferase 1 (HPRT1), DNA-directed RNA polymerase II (RPB2), 18S ribosomal RNA (18S), 28S r
263 increased binding of total and phospho-Ser2 RNA polymerase II specifically at the intron retained un
264 iption-coupled DNA repair (TCR) complex with RNA polymerase II subunit A (POLR2A), ataxin-3, the DNA
265 ogy was found across the range of eukaryotic RNA polymerase II subunits and their associated basal tr
266 How the core subunits of Pol IV, homologs of RNA polymerase II subunits, diverged to support siRNA bi
268 horylation states of Ser(2)/Ser(5) of CTD in RNA polymerase II that occur at different stages of tran
270 tes the binding of the m(6)A MTC to adjacent RNA polymerase II, thereby delivering the m(6)A MTC to a
273 lex, which bridges transcription factors and RNA polymerase II to facilitate transcription initiation
275 14 (H3K14ac) facilitates the processivity of RNA polymerase II to maintain the high expression of key
276 us possesses an upstream motif that recruits RNA polymerase II to produce an ~28 nt primary transcrip
277 d link the SnRK2.6-mediated ABA signaling to RNA polymerase II to promote immediate transcriptional r
278 s, regulating their expression by recruiting RNA polymerase II to promoters for productive transcript
279 sing H3K4me3, transcription start sites, and RNA polymerase II to represent the mass value in the mod
281 that TOE1 promotes maturation of all regular RNA polymerase II transcribed snRNAs of the major and mi
282 guanosine cap is a quintessential feature of RNA polymerase II-transcribed RNAs, and a textbook aspec
283 and Drosophila cells, splicing occurs after RNA polymerase II transcribes several kilobases of pre-m
284 xpressed from an intron that is generated by RNA polymerase II transcribing the circular viral genome
288 e specifically associated with initiation of RNA Polymerase II transcription of highly expressed gene
293 is provided by physical interaction with the RNA polymerase II transcriptional machinery (chromatin r
294 NCBP2), associates with the nascent 5'cap of RNA polymerase II transcripts and impacts RNA fate decis
295 ates distinct isoforms of mRNAs and/or other RNA polymerase II transcripts with different 3'UTR lengt
297 of the length and sequence complexity of the RNA polymerase II unstructured C-terminal domain in anim
298 rucial to the regulation of transcription by RNA-polymerase II, via its interaction with the positive
299 mixed-lineage leukemia protein 4 (MLL4), and RNA polymerase II were recruited to the GREB1 enhancer a