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1 ment) serine/arginine-rich splicing factors (SR proteins).
2 and requires collaboration of more than one SR protein.
3 e recognition, binding, and transport of the SR protein.
4 man SRPK1 bound to a peptide derived from an SR protein.
5 of the RS domain of ASF/SF2, a prototypical SR protein.
6 xons contain less putative binding sites for SR proteins.
7 ulates AS by modulating the levels of active SR proteins.
8 s cellular levels of phosphorylated forms of SR proteins.
9 phases of the processive phosphorylation of SR proteins.
10 n Casq2 but no significant decrease in other SR proteins.
11 SR protein kinases for it compared to other SR proteins.
12 is via SRPK2, a key regulator of RNA-binding SR proteins.
13 redict putative ESEs specific for four human SR proteins.
14 The yeast Saccharomyces cerevisiae lacks SR proteins.
15 ures of SRp38 that distinguish it from other SR proteins.
16 ng distinct recycling pathways for different SR proteins.
17 ownstream exon even in the absence of active SR proteins.
18 nuclear translocation and phosphorylation of SR proteins.
19 known functional parallels between EJCs and SR proteins.
20 NA complex with other known RNA complexes of SR proteins.
21 influences the levels and activity of other SR proteins.
22 of a set of factors that includes eIF3f, the SR protein 9G8, and the cyclin-dependent kinase 11 (CDK1
25 he spliceosome requires the participation of SR proteins, a family of splicing factors rich in argini
26 psis genes that encode serine/arginine-rich (SR) proteins, a conserved family of splicing regulators
27 We show that PEs in serine-arginine-rich (SR) proteins, a family of 14 essential SFs, are differen
28 the biological function of serine-arginine (SR) proteins, a family of essential regulators of mRNA s
29 ontrol the activity of serine-arginine-rich (SR) proteins, a family of splicing co-activators, and th
31 e the wealth of functional information about SR proteins accumulated to-date, structural knowledge ab
32 results suggest that a critical threshold of SR proteins, achieved by juxtaposition of SR protein bin
34 pecific effects on regulated splicing by one SR protein actually depend on a complex set of relations
38 vitro and ex vivo approaches have identified SR proteins and hnRNPs of the A/B and H subfamilies as c
39 Splicing activators and repressors, such as SR proteins and hnRNPs, modulate spliceosome assembly an
41 ially overlaps with that of splicing-related SR proteins and in tex1 plants the ratio of certain alte
44 porter system was promoted by at least seven SR proteins and repressed by hnRNPs F, H and I, supporti
45 of SRPK1 could affect the functions of host SR proteins and those of the virus transcription/replica
46 tive regulator of splicing (NRS), that binds SR proteins and U1/U11 snRNPs and functions as a pseudo-
47 constituted in fibroblasts by downregulating SR proteins and upregulating a RBFOX protein and that SR
48 exon junction complexes (EJC) together with SR proteins and was thus recruited to RNA polymerase II.
49 he interaction between serine/arginine-rich (SR) proteins and splicing components that recognize eith
50 hydroxylates multiple serine/arginine-rich (SR) proteins and SR related proteins, including U2AF65,
52 the nucleus, differential phosphorylation of SR proteins, and alteration of splice site selection.
54 with the Env splicing enhancer, which binds SR proteins, and inactivation of the enhancer and SR pro
56 sulin increased the amount of phosphorylated SR proteins, and this effect was counteracted by arachid
62 ; yet both hypo- and hyperphosphorylation of SR proteins are known to inhibit splicing, indicating th
66 to form megadalton sized complexes in which SR proteins are super-stoichiometric to EJC core factors
72 nuclear export factor 1 (NXF1) by describing SR proteins as NXF1 adaptors that flag alternatively spl
74 The arginine-serine (RS)-rich domain of the SR protein ASF/SF2 is phosphorylated by SR protein kinas
75 rminal portion of the RS domain (RS1) of the SR protein ASF/SF2, a modification that promotes nuclear
77 stent with this, SELEX-binding sites for the SR proteins ASF/SF2, 9G8, and SRp20 were able to stimula
78 Here we provide evidence that a prototypical SR protein, ASF/SF2, is unexpectedly required for mainte
79 strate that a heart-specific knockout of one SR protein, ASF/SF2, produces cardiomyopathy and misregu
83 n a mammalian pre-mRNA, a normally essential SR protein becomes dispensable when the complementarity
85 ns of RNA-binding sites showed that NXF1 and SR proteins bind mRNA targets at adjacent sites, indicat
87 oteins, and inactivation of the enhancer and SR protein binding decreased polyadenylation efficiency.
88 of SR proteins, achieved by juxtaposition of SR protein binding sites within the NRS and Env enhancer
90 , the N-terminus, which positively regulates SR protein binding, adopts a stable structure when the i
91 on in human exons and introns for four known SR protein-binding motifs: SF2/SAF, SC35, SRp40, and SRp
97 increased the phosphorylation of endogenous SR proteins, but their phosphorylation state remained un
98 tein (snRNP), U2B, and serine/arginine-rich (SR) proteins], but is excluded from the coiled bodies an
99 rtant for binding and phosphorylation of the SR protein by CLK1 but not for the SRPK1-dependent react
101 This result provides strong evidence that an SR protein can promote recruitment of splicing factors t
102 Depletion of MALAT1 or overexpression of an SR protein changes the AS of a similar set of endogenous
108 e show that the RS domain of this additional SR protein contacts the 5' splice site specifically in t
109 ular Cell, demonstrate that the RS domain of SR proteins contacts the pre-mRNA branchpoint, indicatin
110 ver an extensive cross-regulatory network of SR proteins controlling their expression via alternative
111 digestion suggests that endogenous EJCs and SR proteins cooperate to promote mRNA packaging and comp
112 ferentiation in P19 cells, illustrating that SR protein-dependent exon skipping may constitute a key
113 upon entry into daughter nuclei, snRNPs and SR proteins do not immediately colocalize in nuclear spe
115 sis revealed increased expression of several SR proteins during the early response to DNA damage, whi
116 at SRPK2 binds and phosphorylates acinus, an SR protein essential for RNA splicing, and redistributes
118 Here we critically evaluate members of the SR protein family (SRSF1-7) for their potential to act a
120 t facilitates the interaction with SRSF3, an SR protein family member that promotes pri-miRNA process
122 we performed extensive sequence analysis of SR protein family members and combined it with ordered/d
123 much stronger splicing activators than other SR protein family members and their activation potential
124 expansion of putative functions of specific SR protein family members in RNA metabolism downstream o
128 ied: p54 (also called SRp54; a member of the SR protein family), human transformer 2 beta (hTra2 beta
129 Here we show that a 35-kDa member of the SR protein family, 9G8, can activate the splicing of alp
131 icing factor Sfrs1, an arginine/serine-rich (SR) protein family member, during mouse retinal developm
132 ASF/SF2, a member of the serine-arginine (SR) protein family, has two RRM domains (RRM1 and RRM2)
134 ctin, a 26 kDa intra-sarcoplasmic reticulum (SR) protein, forms a quaternary complex with triadin, ca
135 ugh phosphorylation directs serine-arginine (SR) proteins from nuclear storage speckles to the nucleo
136 here is involved in the regulation of E2 and SR protein function in posttranscriptional processing of
137 lts underline the importance of ESE-mediated SR protein function in the process of exon definition, i
148 egulated by a group of serine/arginine rich (SR) proteins, heterogeneous nuclear ribonucleoproteins (
149 entified a previously unknown function of an SR protein (i.e., the stimulation of IRES-mediated trans
150 nal discovery and classification, we catalog SR proteins in 20 model organisms, with a focus on green
160 bstantially expands the known roles of human SR proteins in the regulation of a diverse array of RNA
161 s, therefore, highlight the broader roles of SR proteins in vertical integration of gene expression a
162 important implications on the regulation of SR proteins in vivo by the SRPK and Clk/Sty families of
164 ern blot analysis of sarcoplasmic reticulum (SR) proteins in skeletal muscle showed that the absence
165 l SR protein knockout mice, we now show that SR protein-induced exon skipping depends on their preval
168 SRPK1 phosphorylation, not only of cellular SR proteins involved in regulating alternative splicing
169 Surprisingly, five serine/arginine-rich (SR) proteins involved in messenger RNA splicing, includi
170 Further analyses reveal that loss of one SR protein is accompanied by coordinated loss or compens
173 important for intron splicing and the FgSrp1 SR protein is phosphorylated at five conserved sites in
174 fic dephosphorylation of SRp38 and not other SR proteins is determined largely by the low activities
175 gly, the SRPK family of kinases specific for SR proteins is localized in the cytoplasm, which is crit
177 NMD of mRNAs for splicing activators such as SR proteins is triggered by splicing activation events,
178 nt reductions in the sarcoplasmic reticulum (SR) proteins junctin and triadin-1 and increased SR volu
181 n groups, including Kinesin heavy chain, the SR protein kinase cuaba, the cohesin-related gene dPds5/
185 early observation that overexpression of an SR protein kinase, such as the CDC2-like kinase 1 (CLK1)
187 determined largely by the low activities of SR protein kinases for it compared to other SR proteins.
189 protein homologous to serine-arginine-rich (SR) protein kinases, which are thought to regulate splic
190 embryo fibroblasts derived from conditional SR protein knockout mice, we now show that SR protein-in
191 e residues in the RS domain, indicating that SR proteins may be phosphorylated by different kinases i
195 de the first example of a feedback-regulated SR protein network with evidence of an active homeostati
196 In contrast to the cooperative binding of SR proteins observed on the doublesex splicing enhancer,
197 , the cdc2-like kinases (CLKs) phosphorylate SR proteins on their intrinsically disordered Arg-Ser (R
199 ns and upregulating a RBFOX protein and that SR protein overexpression impairs regulated CaMKIIdelta
201 hanistic insights into complex regulation of SR protein phosphorylation and alternative splicing in r
203 e known to inhibit splicing, indicating that SR protein phosphorylation must be tightly regulated in
206 to change alternative splicing and decrease SR-protein phosphorylation by activating protein phospha
209 a multi-isomeric family of spectrin-repeat (SR) proteins, predominantly known as nuclear envelope sc
213 gs, coupled with other established rules for SR proteins, provide a theoretical framework to understa
217 ent with a model in which hypophosphorylated SR proteins remain stably associated with messenger ribo
221 hnRNPs H, F, 2H9, GRSF1, A1, A2, and A3 and SR proteins SC35, SF2, and SRp40 in HEK 293 cells transf
222 ocalizes with snRNPs, but not with a typical SR protein, SC35, during mitosis and following heat shoc
223 isparate functions, showing that a subset of SR proteins seem to bind directly to the histone 3 tail,
228 pression of hnRNPs H, F, 2H9, A1, and A2 and SR proteins SF2 and SRp40 increased nuclear localization
229 that overexpression of hnRNPs A1 and A2 and SR proteins SF2, SC35, and SRp40 causes a dramatic decre
231 cted to eukaryotes and that all prototypical SR proteins share a single ancient origin, including the
232 report that SRPK1, a ubiquitously expressed SR protein-specific kinase, directly binds to the cochap
235 RPK2 belongs to a family of serine/arginine (SR) protein-specific kinases (SRPKs), which phosphorylat
236 tion of protein phosphatase 1 (PP1) with the SR protein splicing factor (SRSF1) to understand the fou
237 nic splicing enhancer (ESE) dependent on the SR protein splicing factor ASF/SF2 or to the creation of
238 se results not only indicate that loss of an SR protein splicing factor can induce cell cycle arrest
247 ese sequences bind the serine/arginine-rich (SR) proteins SRp20 and SF2/ASF and the CELF protein CUG-
248 work demonstrates that a nucleo-cytoplasmic SR protein, SRp20, functions in internal ribosome entry
250 , recent studies have shown that one unusual SR protein, SRp38, serves, contrastingly, as a splicing
253 cytoplasmic-nuclear translocalization of the SR protein SRSF1 is regulated by multisite phosphorylati
254 Our analyses revealed that the prototypical SR protein SRSF1 recognizes clusters of GGA half-sites i
256 e report global analyses of two prototypical SR proteins, SRSF1 (SF2/ASF) and SRSF2 (SC35), using spl
257 rds this end, we sought to determine how two SR proteins-SRSF3 and SRSF7, regulators of pre-mRNA spli
259 nucleus by forming a stable complex with the SR protein substrate and appropriating its NLS for trans
260 isordered structure for several functions of SR proteins, such as for spliceosome assembly and for in
261 ble functional similarities between CFIm and SR proteins suggest that interactions between RS-like do
262 hat two members of the serine/arginine-rich (SR) protein superfamily (ASF/SF2 and SC35) act antagonis
263 Binding sites for serine/arginine rich (SR) proteins tended to be exonic whereas heterogeneous r
264 of SR genes to produce different isoforms of SR proteins that are likely to have altered function(s)
265 dentified PfSR1 as a bona fide Ser/Arg-rich (SR) protein that shuttles between the nucleus and cytopl
266 PK1 phosphorylation of host serine-arginine (SR) proteins that have critical roles in mRNA metabolism
267 the modular nature of the various domains in SR proteins, the proteins produced from splice variants
268 ough the activation of serine/arginine rich (SR) proteins, the splicing factors involved in the produ
270 litated by a subset of serine/arginine-rich (SR) proteins through activation of the optimized 3' spli
271 acks the mechanism to release phosphorylated SR proteins, thus functionally inactivating the splicing
272 essive mechanism--a process that directs the SR protein to the nucleus and influences protein-protein
273 ltimerize with one another and with numerous SR proteins to form megadalton sized complexes in which
276 tagonizes binding of a serine/arginine-rich (SR) protein to an exonic splicing enhancer, thereby inhi
279 ng the IkappaB-alpha S32/36A superrepressor (SR) protein under control of the mouse mammary tumor vir
280 bidopsis, pre-mRNAs of serine/arginine-rich (SR) proteins undergo extensive alternative splicing (AS)
281 icate that posttranslational modification of SR proteins underlies the regulation of their mRNA expor
282 eir well-established roles in mRNA splicing, SR proteins use disordered protein-protein interactions
283 ines in arginine-serine-rich (RS) domains of SR proteins using a directional, C-to-N-terminal mechani
284 of the intronic repressor and recruitment of SR proteins via the SR recruitment sequence of the bifun
285 on in the phosphorylation status of specific SR proteins was detected following the down-regulation o
287 ght into structure-function relationships of SR proteins, we performed extensive sequence analysis of
290 inding sites or a downstream 3' splice site, SR proteins were sufficient to stimulate polyadenylation
291 acid composition and sequence complexity of SR proteins were very similar to those of the disordered
293 to facilitate the release of phosphorylated SR proteins, which then promotes efficient splice-site r
294 providing binding sites for serine-arginine (SR) proteins, which contain an arginine-serine-rich (RS)
295 orylation, suggesting that engagement of the SR protein with exonic splicing enhancers can regulate p
297 show that SON facilitates the interaction of SR proteins with RNA polymerase II and other key spliceo
298 e that the exclusive association of U1 snRNP/SR proteins with RNAP II positions these splicing factor
299 alent interactions between ASF/SF2 and other SR proteins with the 5' ends of SMN1 and SMN2 exon 7.
300 scopy to identify interactions of individual SR proteins with the U1 small nuclear ribonucleoprotein