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1 Tn is composed of TnC, TnI, and TnT.
2 Tn-antigen (Tn), a single N-acetylgalactosamine (GalNAc)
3 Tn-Seq is a high throughput technique for analysis of tr
4 Tn-Seq is an experimental method for probing the functio
5 Tn-seq is based on the assembly of a saturated Mariner t
6 Tn-seq measures the frequency of actual members of a het
7 Tn-seq screening of E. coli Tn10 insertion library revea
8 Tn-seq was used to identify genes essential for phototro
13 employing 22 million Europeans in a euro 1.5 Tn endeavour, being the premier global economic growth o
15 leased at the N-termini of the Gal((13)C(6))-Tn-occupied Ser/Thr residues from immobilized peptides t
16 hmarked by analyzing Jurkat cells, where 947 Tn-glycosylation sites from 480 glycoproteins were mappe
17 C. burnetii clone was isolated containing a Tn insertion within the C terminus of the cell division
21 h may be important in understanding aberrant Tn antigen expression in human diseases, including IgA n
24 ing of the intensity profiles obtained after Tn exchange at pCa 5.8 suggest that the profiles are bes
25 tic efficacy of CAR T cells directed against Tn-MUC1 and present aberrantly glycosylated antigens as
27 s, characterized by 10-base pair periodic An/Tn-clusters (PATCs), can license transgenes for germline
29 cal methods have been proposed for analyzing Tn-Seq data to identify genetic interactions, including
30 te HMM provides an improved way of analyzing Tn-seq data and assessing different levels of essentiali
32 novel HexNAc-GalNAc-mucin-type O-glycan, and Tn-antigen; identified the glycosyltransferases for asse
34 We characterize for the first time the T and Tn glycoform O-glycoproteome of the Drosophila melanogas
36 analysis available for most transposons and Tn-Seq associated approaches (e.g. TraDis, HiTS, IN-Seq)
38 (ZPS) PS A1 and the well-known tumor antigen Tn has been designed, synthesized, and studied for immun
40 Selection with a noncognate human antigen, Tn-MUC1, yielded scFv variants that were broadly reactiv
41 mmon tumor-associated carbohydrate antigens, Tn and sialyl Tn (STn), result from somatic mutations in
42 s of tumor-associated carbohydrate antigens, Tn and STn, were assembled on a single cyclic peptide sc
43 a cluster of the most common TACA (known as Tn antigen) covalently attached to T-cell peptide epitop
44 ngle N-acetylgalactosamine (GalNAc, known as Tn antigen) rather than the normally extended carbohydra
46 at has specificity for the cancer-associated Tn antigen, to compare the expression of both antigens i
48 oped a CAR that recognized cancer-associated Tn glycoform of MUC1, a neoantigen expressed in a variet
49 NAc residues present in the tumor-associated Tn antigen (alphaGalNAc-Ser/Thr) and its sialylated form
51 melanoma-derived cells lines, expressed both Tn and STn antigen due to loss-of-function mutations in
53 role of eight additional genes identified by Tn-seq in A. baumannii resistance to killing by NHS but
54 nditionally essential proteins identified by Tn-seq were analyzed by targeted proteomics, and 70% of
56 cal model in which strong A-M binding and Ca-Tn binding independently activates the rate of A-M weak-
57 on actin either through calcium-troponin (Ca-Tn) binding or by actin-myosin (A-M) strong binding.
62 A3-presenting asialofetuin and the clustered Tn-rich asialo-bovine submaxillary mucin, were subsequen
63 n of mouse tumor cells that bear its cognate Tn-glycopeptide epitope in podoplanin, also called OTS8.
64 netic interactions, which involves comparing Tn mutant libraries generated in different genetic backg
66 abeled UDP-Gal((13)C(6)), to tag and convert Tn to Gal((13)C(6))-Tn, which gives rise to a unique gly
68 prior to this work, the size of the discrete Tn cluster remained at T3, with only 10 metal sites (e.g
70 rnetii nopA::Tn or a Dot/Icm-defective dotA::Tn mutant strain present a functional innate immune resp
73 nge in rigor myofibrils was used to estimate Tn dissociation rates from the nonoverlap and overlap re
75 Given the significance of Tn in cancer, EXoO-Tn is anticipated to have broad translational and clinic
79 as tested on simulated data and experimental Tn-Seq data from Serratia marcescens transposon mutant l
80 mutations in Cosmc, and therefore expressing Tn and STn antigens to study the role of O-glycans in TR
87 The higher affinities of SBA and VML for Tn-PSM relative to Fd-PSM indicate the importance of car
88 The higher affinities of SBA and VML for Tn-PSM relative to its two shorter chain analogs demonst
90 gests that Ca(2+) binding to each functional Tn activates < 7 actins of a structural regulatory unit
91 y exposed in the absence of core 1 O-glycan, Tn antigen, in the colon epithelium of a subset of UC pa
92 oma cells often express truncated O-glycans, Tn (GalNAcalpha1-Ser/Thr), and Sialyl-Tn (Siaalpha2-6Gal
94 osamine-transferases (GalNAc-Ts) drives high Tn levels in cancer cell lines and in 70% of malignant b
96 ew studies have compared intermediate and hs-Tn in patients undergoing transcatheter aortic valve rep
99 identifying conditionally essential genes in Tn-Seq experiments with high detection sensitivity and s
100 eletal) muscle, Ca(2+) binding to individual Tn complexes is insufficient to completely activate thei
101 , screened genome-wide transposon insertion (Tn-seq) and transcriptome (RNA-seq) libraries to charact
104 se activity as a function of pCa and labeled Tn exchange in rigor myofibrils was used to estimate Tn
108 high-throughput strategy based on the method Tn-seq that can be applied to any genetically manipulata
114 eolytic peptides of proteins, which modifies Tn by glycosyltransferase C1GalT1 with isotopically labe
115 These T4 clusters are the largest molecular Tn clusters known to date and can be made in various com
118 n concomitant Ca(2+) binding at neighbouring Tn sites and/or crossbridge feedback effects on Ca(2+) b
119 that cells exposed to the C. burnetii nopA::Tn or a Dot/Icm-defective dotA::Tn mutant strain present
120 reduces costs and retains the advantages of Tn-Seq, while expanding the method's original applicabil
126 erived 81 amino acid tandem repeat domain of Tn-PSM containing approximately 23 alpha-GalNAc residues
130 apoptotic stimuli, suggesting expression of Tn/STn may offer tumor cell survival advantages through
138 m motility that persisted in the presence of Tn and submaximal Ca(2+) Furthermore, decreasing the ext
139 This report reveals the protective role of Tn fetal isoforms as they rescue the increased Ca(2+) se
140 ived 38/40 amino acid cleavage product(s) of Tn-PSM containing approximately 11-12 alpha-GalNAc resid
143 nin (Tn) isoform expression and/or status of Tn phosphorylation, we studied fiber bundles that had be
144 idue-specific consequences of acetylation on Tn-Tpm-based regulation of actomyosin activity, we asses
145 timulation of cell migration is dependent on Tn-bearing proteins present in lamellipodia of migrating
147 However, the affinity of bound SBA for other Tn-PSM molecules during cross-linking is much higher tha
148 ty of bound SBA for GalNAc residues on other Tn-PSM molecules appears to be due to the favorable entr
151 ecretion, and the number of IL-17A-producing Tn cells were elevated in Il17ra(-/-) and Il17ra(-/-)Itg
152 The total number of CD3+ IL-17A-producing Tn cells were significantly reduced in the spleen and la
158 show that expression of the disease-related Tn antigen can result from deregulation or loss of Cosmc
159 nd approximately 2300 alpha-GalNAc residues (Tn-PSM) binds to the soybean agglutinin (SBA) with a K(d
160 mately 2300 GalNAcalpha1-O-Ser/Thr residues (Tn-PSM) has been ascribed to an internal diffusion mecha
161 d be regarded as conformationally restricted Tn antigen mimics, as we have demonstrated by biological
164 suggested that a fluorescent reporter cis SB-Tn system can be used to enrich mammalian cells harborin
165 ere a novel dual fluorescent reporter cis SB-Tn system that permitted nonselective fluorescent-activa
167 ant enrichment (>60%) of cells exhibiting SB-Tn-mediated genomic insertions and long-term expression
172 ere assessed using ToxT and in vivo RNA-seq, Tn-seq, and cholera stool proteomic and other genome-wid
173 transposon mutagenesis and deep sequencing (Tn-seq) to identify T6SS immunity proteins in Vibrio cho
177 We used transposon insertion sequencing (Tn-Seq) to define essential genes in nine strains of Pse
178 e used transposon insertion site sequencing (Tn-seq) to comprehensively assess the contribution of ne
180 next-generation high-throughput sequencing (Tn-seq) promises to revolutionize systems level analysis
181 um resistance, a transposon (Tn) sequencing (Tn-seq) approach was used to identify genes contributing
182 genetic screen with a transposon sequencing (Tn-seq) library of a pneumococcal strain in a ferret tra
183 previously reported a transposon sequencing (Tn-seq) system for performing genomewide assessment of g
185 re published in 2009: transposon sequencing (Tn-Seq), transposon-directed insertion site sequencing (
188 tory factors, we used transposon-sequencing (Tn-Seq)(5) to screen for mutations affecting the growth
190 ociated carbohydrate antigens, Tn and sialyl Tn (STn), result from somatic mutations in the gene Cosm
191 ycans, Tn (GalNAcalpha1-Ser/Thr), and Sialyl-Tn (Siaalpha2-6GalNAcalpha1-Ser/Thr, STn) on their surfa
192 scrimination of the cancer-associated sialyl-Tn (STn) antigen was developed by using Sambucus nigra a
193 corporation into the carcinoma marker Sialyl-Tn, and is the first example of such a novel mechanism f
199 C-ms proteomics), gene essentiality studies (Tn-seq), genome wide protein localization studies, and g
204 mmune responses derived from single naive T (Tn) cells, single primary, and single secondary central
205 f IL-17A-expressing neutrophil-regulatory T (Tn) cells; CD4(-)CD8(-)alphabeta(low), CD4(+)CD8(-)alpha
206 ocked down in ESCC cell lines (KYSE450 and T.Tn), immortalized normal esophageal epithelial cell line
209 ero-inflated Poisson model for analyzing the Tn-seq data that are high-dimensional and with an excess
210 In cancer cells, some glycans (such as the Tn antigen) are highly up-regulated, but this remains la
211 n with terminal GalNAc moieties, such as the Tn antigen, on CD45 of effector T cells, thereby down-re
212 tures of MUC1-like glycopeptides bearing the Tn antigen (alpha-O-GalNAc-Ser/Thr) in complex with an a
217 onal scan showing that residues flanking the Tn-glycan contributed significant binding energy to the
218 of a scFv antibody fragment specific for the Tn-glycoform of MUC1 had potent activity in preclinical
219 ase, the only enzyme that galactosylates the Tn antigen (GalNAcalpha1-Ser/Thr-R) to form core 1 Galbe
220 g synthetic glycopeptides with O-GalNAc (the Tn antigen) or O-GlcNAc, we demonstrated that the method
222 T-synthase and consequent expression of the Tn antigen (GalNAcalpha1-Ser/Thr), which is associated w
223 sm underlying the abnormal expression of the Tn antigen, which may be important in understanding aber
227 ncer specimens that showed expression of the Tn/STn antigens were also found to have mutations in Cos
229 ts suggest that MGL not only connects to the Tn carbohydrate epitope, but also engages the underlying
230 tion of antibodies that are selective to the Tn-antigen glycan and cross-reactive toward mucin protei
231 ate construct confers specificity toward the Tn antigen alone, and specific carbohydrate immunoglobul
236 ion (R = tert-butyl, R' = H, Me, 2'-thienyl (Tn), L = Cl(-), NCS(-), NCO(-), N(3)(-)), has been chara
237 riation and morphological trends within this Tn library, and in various C. jejuni wild type strains,
239 time course of myosin-S1 binding to actin-Tm-Tn filaments in solution at various calcium levels with
244 ing negative cooperativity of SBA binding to Tn-PSM correlates with a decreasing level of internal di
245 investigated its binding characteristics to Tn-containing glycopeptides derived from the MGL ligands
246 9T variant lost high-affinity binding toward Tn-containing glycopeptides, especially at low probing c
249 pC, we identified mutants from a transposon (Tn) insertion library which lack surface-exposed Ebp pil
252 A. baumannii serum resistance, a transposon (Tn) sequencing (Tn-seq) approach was used to identify ge
253 us, we screened a low-complexity transposon (Tn) mutant library to identify novel genes important for
257 d potential drug targets, random transposon (Tn) mutants derived from the A. baumannii strain AB307-0
258 system, the Sleeping Beauty (SB) transposon (Tn) to insert a wild-type beta-globin expression cassett
259 the wide activity of the Mariner transposon, Tn-seq has the potential to contribute to the exploratio
262 t least in part by the troponin-tropomyosin (Tn-Tm) switch on the thin (actin-containing) filaments.
265 nd Lethocerus tropomyosin (Tm) and troponin (Tn) regulate the binding of rabbit myosin to rabbit acti
266 ils by replacing endogenous Tm and troponin (Tn) with recombinant Tm mutants and purified skeletal Tn
268 en years ago, mutations in cardiac troponin (Tn)T and alpha-tropomyosin were linked to familial hyper
269 force-pCa relationship, endogenous troponin (Tn) was exchanged in rat ventricular trabeculae with eit
271 To rule out any alterations in troponin (Tn) isoform expression and/or status of Tn phosphorylati
272 In skeletal and cardiac muscles, troponin (Tn), which resides on the thin filament, senses a change
273 uence data suggest the presence of troponin (Tn) components, consistent with actin-linked regulation,
275 ding and dissociation of Ca(2+) on troponin (Tn) to the movement of tropomyosin on actin filaments.
276 Ca(2+) via the regulatory proteins troponin (Tn) and tropomyosin (Tpm), which are associated with act
278 ase the calcium sensitivity of the troponin (Tn) complex or reconstituted thin filaments with or with
279 ning of Tm along the actin (Ac):Tm:troponin (Tn) thin filament to block or expose myosin binding site
285 ysis of a saturated mutant GAS library using Tn-sequencing and generation of a conditional-expression
286 sequenced in a high throughput manner using Tn-seq to identify potential mechanisms of xds regulatio
288 on bottlenecks in a murine host, we utilized Tn-seq to monitor the composition of mixed populations o
289 imilar reduction also could be observed when Tn contained cTnI(Thr>Pro) (deltaEC50=0.24+/-0.04 microm
293 a(2+) dissociation rates (k(off)) from whole Tn complexes containing sTnC (26 +/- 0.1 s(-1)), cTnC (3
295 vors exhibited abnormalities correlated with Tn antigen expression that are related to several human
298 he cop- background and isolated strains with Tn insertions in the mntABC operon that permitted growth
300 icular trabeculae with either wild-type (WT) Tn, non-phosphorylatable cTnI (S23/24A) Tn or phosphomim