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1 UGA appears not to function as a stop codon and is in eq
2 UGA codon reassignment renders SR1 genes untranslatable
3 UGA translation as selenocysteine is absolutely dependen
7 ing uORFs and nucleotide motifs, such as '5'-UGA(C/G)GG-3', are found in 5' leader regions of regulat
12 e the unusual amino acid selenocysteine at a UGA codon, which conventionally serves as a termination
15 ntain a selenocysteine residue, encoded by a UGA codon, as the penultimate carboxyl-terminal amino ac
19 lutathione peroxidase 1 (Se-GPx1) contains a UGA codon that is recognized as a codon for the nonstand
20 that the percentage of ribosomes decoding a UGA codon as selenocysteine rather than termination can
21 n, we used a reporter gene system that has a UGA codon within the protein-coding region of the lucife
22 of selenoproteins requires the decoding of a UGA codon as selenocysteine (Sec) instead of translation
25 actors are necessary for "read-through" of a UGA stop codon that specifies selenocysteine incorporati
27 Functional evidence for the absence of a UGA suppressor tRNA in the cytosol, using a reporter gen
28 e conductance regulator (CFTR) W1282X PTC (a UGA codon) in the context of its three upstream and down
30 translational cofactors to "read-through" a UGA-stop codon that specifies SEC incorporation at the a
31 1 (NF1) mRNA changes an arginine (CGA) to a UGA translational stop codon, predicted to result in tra
32 ocysteine incorporation element along with a UGA codon into a reporter construct allows for read-thro
34 verexpressing eRF1 and eRF3, and of altering UGA codon context, on the efficiency of selenoprotein sy
35 teine Insertion Sequence (SECIS) element and UGA codon are sufficient for selenocysteine (Sec) insert
37 nd overexpression of the cysteine mutant and UGA-terminated proteins in the baculovirus insect cell s
39 a coli glutamine tRNA, suppress UAG, UAA and UGA termination codons, respectively, in a reporter mRNA
41 each of the three stop codons (UAG, UAA, and UGA) and facilitates release of the nascent polypeptide
44 tandard genetic code recognize UAA, UAG, and UGA as stop codons, whereas variant code species frequen
48 on in eukaryotes occurs cotranslationally at UGA codons via the interactions of RNA-protein complexes
51 that Sec is more efficiently incorporated at UGA codons positioned in the middle of the coding region
53 -kDa GFP/GPX1 proteins, Sec incorporation at UGA codons, formerly close to the 5' or 3' ends, was inc
55 , whereas Trp, Arg, and Cys were inserted at UGA, and the frequency of insertion of individual amino
57 nthesis and insertion of Cys into protein at UGA codons and suggest new biological functions for thio
65 to the primary sequence arrangement between UGA codons and SECIS elements, their proximity within th
66 steine incorporation as the distance between UGA codons is increased, and that efficient selenocystei
70 nd twenty second amino acids, are encoded by UGA and UAG, respectively, which are the codons that usu
71 are amino acid in protein that is encoded by UGA with the requirement of a downstream mRNA stem-loop
76 ncy of Sec incorporation can be modulated by UGA position; Sec incorporation at high efficiency appea
79 Furthermore, the deletion was found to cause UGA readthrough on its own, thereby implicating helix 73
80 also confirm here a previous report that CCC UGA is a translational frameshift site, in these experim
86 ted into selenoproteins in response to codon UGA with the help of the selenocysteine insertion sequen
90 er by replacing the natural tnaC stop codon, UGA, with UAG or UAA in a tnaC-stop codon-tnaA'-'lacZ re
94 ease factor to one of the three stop codons (UGA, UAA or UAG) results in the termination of protein s
96 n the four readthrough candidates containing UGA-CUAG, this motif is conserved not only in mammals bu
97 first is a conserved, inefficiently decoded UGA codon in the N-terminal region, which appears to ser
98 ons downstream of this inefficiently decoded UGA which confer the potential for nonsense-mediated dec
103 ec incorporation at the first and downstream UGA codons occurs with variable efficiencies to control
107 -nucleotide-long fragments representing each UGA codon context into a luciferase reporter construct h
108 n immediately downstream of the Sec-encoding UGA codon, whereas in eukaryotes a completely different
110 djacent to, or near, selenocysteine-encoding UGA codons in the Sps2, SelH, SelO, and SelT selenoprote
113 ncorporation (i.e., after decoding the first UGA codon as selenocysteine) are fully competent to term
114 Selenocysteine incorporation at the first UGA codon is inefficient but increases by approximately
115 G read-through element upstream of the first UGA codon or by providing a competing messenger RNA in t
116 fic expansion of the genetic code allows for UGA codons to specify the amino acid selenocysteine (Sec
117 he stem (G1922) is specifically critical for UGA codon recognition by the class 1 release factor RF2.
118 appears analogous to cis-acting elements for UGA translation as selenocysteine, although different me
122 n the 3'-untranslated region and an in-frame UGA codon are the requisite cis-acting elements for the
123 D helix in ribosomes stalled at the in-frame UGA codon of prfB generates tension on the mRNA that des
124 nic amino acid encoded by a recoded in-frame UGA codon that does not operate as the canonical opal st
126 from Metridium senile that has four in-frame UGA codons and two nearly identical SECIS elements.
128 s by translational recoding whereby in-frame UGA codons are redefined to encode the selenium containi
130 75)Se labeling showed that all four in-frame UGA codons supported Sec insertion and that both SECIS e
131 diated decay due to the presence of in-frame UGA codons that can be decoded as either selenocysteine
138 er protein synthesis levels exhibited higher UGA readthrough, which was confirmed with ribosome-targe
142 nt loops of this conserved rRNA structure in UGA-dependent translation termination and, taken with pr
143 etic code alterations in ciliates, including UGA --> tryptophan in Blepharisma americanum and the dis
144 c and metabolic features with SR1, including UGA to glycine reassignment and an archaeal-type ribulos
145 ncorporation is able to repress G418-induced UGA readthrough as well as eRF1-induced stimulation of t
146 the C terminus and the adjacent inefficient UGA termination codon act to recruit the SsrA-tagging sy
147 selenoproteins requires recoding of internal UGA stop codons to the 21st non-standard amino acid sele
148 d that the conversion efficiency of PGA into UGA increases in a range of coefficients of dilution unt
157 on model that incorporated Sec at non-native UGA codons at rates equal to those of endogenous glutath
164 SECIS) elements required for the decoding of UGA as a selenocysteine in the 3'-untranslated region (U
167 t increase in ribosome density downstream of UGA-Sec codons for a subset of selenoprotein mRNAs and t
168 le effects on ribosome density downstream of UGA-Sec codons that demonstrate gene-specific difference
170 don context in determining the efficiency of UGA readthrough at each of the 10 rat Sel P Sec codons,
173 eaching an upper limit where the fraction of UGA that is extracted from the bioreactor is maximized.
176 elements conducting multiple occurrences of UGA redefinition to control the synthesis of full-length
177 tion RNA structures, the coding potential of UGA codons, and the presence of cysteine-containing homo
178 ant differences, spanning an 8-fold range of UGA readthrough efficiency, were observed, but these dif
185 incorporated into proteins via "recoding" of UGA from a stop codon to a sense codon, a process that r
186 oding genes, is essential for recognition of UGA as a codon for Sec rather than as a stop signal.
189 of selenoprotein messages by redefinition of UGA codons, which normally specify termination of transl
191 nslation level by differential regulation of UGA redefinition and Sec incorporation efficiency, altho
192 ss that is characterized by up-regulation of UGA-selenocysteine recoding efficiency and relocalizatio
194 A is depolymerized into oligogalacturonates (UGA), which are continuously extracted from the tank.
198 coplasma genes encoding the P30 adhesin (one UGA) of Mycoplasma pneumoniae and methionine sulfoxide r
199 example, Tetrahymena species recognize only UGA as a stop codon, while Euplotes species recognize on
200 Ribosomes encountering premature UAA or UGA codons in the CAN1 mRNA fail to release and, instead
205 Sec or Cys in MsrBs, whereas the three other UGA codons evolved recently and had no homologs with Sec
207 co-translationally inserted at a predefined UGA opal codon by means of Sec-specific translation mach
212 ntified mutations in Eo/Sc eRF1 that restore UGA recognition and define distinct roles for the TASNIK
216 metazoa with highly variable numbers of Sec-UGAs, ranging from a single UGA in certain insects, to 9
219 for Um, and tRNA(Pro(GGG)) for Am. tRNA(Ser(UGA)), previously observed as a TrmJ substrate in Escher
221 )UCA level was increased and the mt tRNA(Ser)UGA level was decreased, suggesting that TRIT1 may contr
222 p, only tRNA(Ser)AGA, tRNA(Ser)CGA, tRNA(Ser)UGA, and selenocysteine tRNA with UCA (tRNA([Ser]Sec)UCA
223 f these identity elements into the tRNA(Ser)(UGA) scaffold resulted in phosphorylation of the chimeri
225 as most selenoprotein mRNAs contain a single UGA codon and a single SECIS element, selenoprotein P ge
227 e numbers of Sec-UGAs, ranging from a single UGA in certain insects, to 9 in common spider, and up to
228 co-translationally incorporated at specific UGA codons that normally serve as termination signals.
232 rected by translational recoding of specific UGA codons located upstream of a stem-loop structure kno
234 ec-tRNA(Sec)) to the ribosome and suppresses UGA codons that are upstream of Sec insertion sequence (
236 enoenzyme, a cysteine mutant enzyme, and the UGA-terminated protein in mammalian cells and overexpres
238 the inefficient incorporation of Sec at the UGA codon during mRNA translation augments the nonsense-
240 Although the major readthrough event at the UGA codon was insertion of tryptophan, Sec was also inco
241 chain as compared with selenocysteine at the UGA codon, expression of the catalytically inactive Gpx4
248 loop RNA structure immediately following the UGA codon and forms part of the coding sequence in bacte
249 noproteins and for ribosome pausing near the UGA-Sec codon in those mRNAs encoding the selenoproteins
251 t immediately upstream and downstream of the UGA codon significantly affects termination to incorpora
256 of C to T seven nucleotides upstream of the UGA stop codon of ssfR was responsible for the phenotype
258 elenocysteine (Sec), through recoding of the UGA stop codon, creates a unique class of proteins.
261 on of selenocysteine (Sec) into protein, the UGA codon is transformed from one that signals translati
263 y incorporated into proteins by recoding the UGA opal codon with a specialized elongation factor (Sel
264 decoded by the same sequence that spans the UGA stop codon of rabbit beta-globin mRNA were detected.
265 high efficiency appears to require that the UGA be >21 nucleotides from the AUG-start and >204 nucle
267 uence element approximately 4.8 kb 3' to the UGA codon in the active center and three short open read
269 to three amino acids that correspond to the UGA stop codon site and/or one or two of the immediate d
270 the approximately 150 nt 3'-adjacent to the UGA, and RNA folding algorithms revealed the potential f
272 confirmed that in the presence of l-Trp, the UGA stop codon generates higher accumulation of both Tna
274 peroxidase-1 (F-GPX1) expression vector, the UGA at the native position (U47) was mutated to a cystei
276 asmic nonsense-mediated decay (NMD) when the UGA selenocysteine (Sec) codon is recognized as nonsense
277 xpression was reduced to 20 and 50% when the UGA stop codon was replaced by UAG or UAA, respectively,
278 by the identity of its stop codon, with the UGA stop codon producing higher expression efficiency of
279 oforms arise from the same mRNA and that the UGAs that specify the second, third, and seventh selenoc
281 educe l-Trp-dependent expression of the tnaC(UGA) tnaA-lacZ construct and the ability of l-Trp to inh
282 n initiation, structures located adjacent to UGA codons, additional coding sequence regions necessary
283 ique tRNA with an anticodon complementary to UGA, a unique elongation factor specific for this tRNA,
284 trations of translational components lead to UGA readthrough heterogeneity among single cells, which
286 ocysteine (Sec) into proteins in response to UGA codons is directed by selenocysteine insertion seque
287 ocysteine (Sec) into proteins in response to UGA codons requires a cis-acting RNA structure, Sec inse
288 is inserted cotranslationally in response to UGA codons within selenoprotein mRNAs in a process requi
290 are amino acid selenocysteine in response to UGA stop codons have helped provide a better understandi
291 e sole Trp codon in the sequence (Trp271) to UGA, decreased both the number of flagella and the abili
297 d in about 50% inhibition of expression when UGA was replaced by UAG or UAA and the appropriate suppr
300 side-induced readthrough were observed, with UGA showing greater translational readthrough than UAG o