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1 ZFN activity was dependent on the number of modules in e
2 ZFN-edited cells maintained both pluripotency and long-t
3 ZFN-induced double-strand breaks are subject to cellular
4 ZFN-mediated gene targeting yields high gene modificatio
5 ZFN-mediated site-specific mutagenesis and complete remo
6 ZFN-treated HSPCs retained the ability to engraft NOD/SC
7 ZFNs and TALENs enable a broad range of genetic modifica
8 ZFNs are chimeric proteins with significant potential fo
9 ZFNs are formed by fusing zinc-finger proteins to the no
10 ZFNs composed of six-finger MA arrays produced mutations
11 ZFNs directed against an eGFP transgene in Xenopus tropi
12 ZFNs directed against the noggin gene produced tadpoles
13 ZFNs engineered against the parasite gene pfcrt, respons
14 ZFNs recognizing the Arabidopsis ADH1 and TT4 genes were
15 ZFNs resulted from basic research on zinc finger protein
21 wever, application of these two methods to a ZFN pair targeted to the human CCR5 gene led to identifi
23 mine (Pyr)-susceptible Chesson strain with a ZFN plasmid carrying a Pyr-resistant mutant pvdhfr seque
24 lts broaden the therapeutic potential of AAV/ZFN-mediated genome editing in the liver and could expan
26 % of primary transgenics expressing the ADH1 ZFNs and 33% of transgenics expressing the TT4 ZFNs.
27 emonstrate reduced off-target activity after ZFN protein transduction relative to conventional delive
31 trate for the first time that both TALEN and ZFN injected directly into pig zygotes can produce live
32 ta from CRISPR/Cas9 with those of TALENs and ZFNs and shows that efficiency of CRISPR/Cas9 is sixfold
35 describe complementary strategies to augment ZFN activity after gamma-retroviral transduction, includ
38 LENs showed comparable activity to benchmark ZFNs, with allelic gene disruption frequencies of 15-30%
40 t, containing a GUS reporter gene flanked by ZFN cleavage sites, a GFP reporter gene and a PAT select
42 n (GFP) coding sequence (gfp) was flanked by ZFN recognition sequences was used to produce transgenic
43 reover, we measure the overhangs produced by ZFN cleavage and find that oligonucleotide donors with s
52 -in-one' lentiviral particles, we co-deliver ZFN proteins and the donor template for homology-directe
55 Cleavage is induced when two custom-designed ZFNs heterodimerize upon binding DNA to form a catalytic
59 ne for beta-lactoglobulin (LGB) and detected ZFN-induced random mutations in 30% to 80% of embryos.
60 d the affinity of zinc fingers, we developed ZFNs specific for the TRAC locus that mediated 98% knock
63 , it remains challenging to design effective ZFNs for many genomic sequences using publicly available
64 density that approaches 1.0 (i.e., efficient ZFNs available for targeting almost every base step).
67 and general method for converting engineered ZFNs into zinc finger nickases (ZFNickases) by inactivat
72 ies on the mechanism of cleavage by 3-finger ZFNs established that the preferred substrates were pair
73 iable di-residues (RVDs) and 3- and 4-finger ZFNs, and validated 13 bona fide off-target sites for th
74 tforward modular assembly-based approach for ZFN construction and gene inactivation in zebrafish.
77 fold improvement in targeted mutagenesis for ZFNs containing derivatives of the Sharkey cleavage doma
78 rry an array of unique recognition sites for ZFNs and homing endonucleases and a family of modular sa
83 bust editing by using obligate heterodimeric ZFNs engineered to minimize unwanted cleavage attributab
87 al application, simple methods that increase ZFN activity, thus ensuring genome modification, are hig
88 sely change the LGB sequence, we co-injected ZFNs or transcription activator-like effector nucleases
89 ts suggest that, when used appropriately, MA ZFNs are able to target more DNA sequences with higher s
90 268 array variants revealed that half of MA ZFNs of any array composition that exceed an ab initio B
93 eathing abnormalities were apparent in Mecp2(ZFN/y) rats, whereas Mecp2(ZFN/+ )rats displayed functio
97 apparent in Mecp2(ZFN/y) rats, whereas Mecp2(ZFN/+ )rats displayed functional irregularities later in
99 pecificities and nearly one-third of modular ZFNs generated lesions at their targets in the zebrafish
101 ddresses these issues: zinc finger nuclease (ZFN) -mediated site-specific integration of therapeutic
102 -based gene targeting, zinc-finger nuclease (ZFN) and transcription activator-like effector nuclease
103 r nuclease (TALEN) and zinc finger nuclease (ZFN) can be engineered into site-specific synthetic self
104 transgene, flanked by zinc finger nuclease (ZFN) cleavage sites, was deleted from a stably transform
105 r nuclease (TALEN) and zinc finger nuclease (ZFN) genome editing technology enables site directed eng
107 ing electroporation of zinc finger nuclease (ZFN) mRNA with donor template delivery by adeno-associat
109 The development of zinc finger nuclease (ZFN) technology has enabled the genetic engineering of t
110 This method uses a zinc-finger nuclease (ZFN) to create a site-specific double-strand break (DSB)
112 rgeted integration via zinc finger nuclease (ZFN)--mediated homologous recombination in A549 cells th
113 Initially, we injected zinc finger nuclease (ZFN)-encoding mRNA or DNA into bovine zygotes to verify
114 ces in transposon- and zinc finger nuclease (ZFN)-mediated gene knockout as well as the establishment
116 -mediated delivery of zinc finger nucleases (ZFN) proteins using transferrin receptor-mediated endocy
120 donucleases including zinc finger nucleases (ZFNs) and clustered regularly interspaced short palindro
121 V) vector delivery of zinc finger nucleases (ZFNs) and corrective donor template to the predominantly
123 that a combination of zinc finger nucleases (ZFNs) and piggyBac technology in human iPSCs can achieve
124 le the specificity of zinc-finger nucleases (ZFNs) and RNA-guided endonucleases has been assessed to
126 nucleases, including zinc finger nucleases (ZFNs) and TAL effector nucleases (TALENs), have made it
127 applicable with both zinc finger nucleases (ZFNs) and Tale nucleases (TALENs), and has enabled us to
129 This study optimized zinc-finger nucleases (ZFNs) and transcription activator-like effector nuclease
130 icable strategy using zinc finger nucleases (ZFNs) and transcription activator-like effector nuclease
131 ected nucleases, like zinc-finger nucleases (ZFNs) and transcription activator-like effector nuclease
145 e the use of designed zinc finger nucleases (ZFNs) for efficient transgenesis without drug selection
146 The widespread use of zinc-finger nucleases (ZFNs) for genome engineering is hampered by the fact tha
147 rand breaks (DSBs) by zinc finger nucleases (ZFNs) has been deployed for gene replacement in plant ce
148 The development of zinc finger nucleases (ZFNs) has permitted efficient genome editing in transfor
152 jection of engineered zinc-finger nucleases (ZFNs) in embryos was used to generate gene knockouts in
156 ble reagents were the zinc finger nucleases (ZFNs) showing that arbitrary DNA sequences could be addr
158 ng the specificity of zinc finger nucleases (ZFNs) that engineers the FokI catalytic domain with the
159 f this parasite using zinc-finger nucleases (ZFNs) that produce a double-strand break in a user-defin
161 sion of CCR5-targeted zinc finger nucleases (ZFNs) to generate CCR5-negative cells, which could then
162 feasibility of using zinc-finger nucleases (ZFNs) to knock out a gene directly in a pure NOD backgro
164 off-target effects of zinc finger nucleases (ZFNs) were described-one using an in vitro cleavage site
166 in the monarch using zinc-finger nucleases (ZFNs), engineered nucleases that generate mutations at t
167 ld-type CC-125) using zinc-finger nucleases (ZFNs), genetically encoded CRISPR/associated protein 9 (
168 igner nucleases, like zinc-finger nucleases (ZFNs), represent valuable tools for targeted genome edit
169 ses or meganucleases, zinc-finger nucleases (ZFNs), TAL effector nucleases (TALENs), and CRISPR-assoc
170 pioneering work using zinc-finger nucleases (ZFNs), to the advent of the versatile and specific TALEN
171 nucleases, including zinc-finger nucleases (ZFNs), transcription activator-like (TAL) effector nucle
172 le cleavage reagents: zinc-finger nucleases (ZFNs), transcription activator-like effector nucleases (
173 hree central methods, zinc finger nucleases (ZFNs), transcription activator-like effectors (TALENs),
175 cision targeting with zinc-finger nucleases (ZFNs), we have developed an expanded set of architecture
176 mbryonic injection of zinc-finger nucleases (ZFNs), which generate site-specific double strand breaks
177 his organism, we used zinc-finger nucleases (ZFNs), which take advantage of homology-directed DNA rep
178 gulated expression of zinc finger nucleases (ZFNs)-enzymes engineered to create DNA double-strand bre
183 However, the high frequency of observed ZFN-induced mutagenesis suggests that targeted mutations
184 Here, we show that in silico abstraction of ZFN cleavage profiles obtained from in vitro cleavage si
185 of ZFNs, we compared the in vivo activity of ZFN variants targeting the zebrafish kdrl locus, which d
186 ficacy of CoDA will enable broad adoption of ZFN technology and make possible large-scale projects fo
187 We report here the successful application of ZFN pairs to specifically and efficiently knock out Tnfr
188 ur study demonstrates a novel application of ZFN technology to the targeted genetic engineering of hu
190 the expression, purification and delivery of ZFN proteins, which are intrinsically cell-permeable; TA
192 onally, despite the much shorter duration of ZFN activity, the efficiency of gene correction approach
195 s recombination and an absolute frequency of ZFN-directed homologous recombination as high as 17% in
197 This article briefly reviews the history of ZFN development and summarizes applications that have be
198 gs establish an energy compensation model of ZFN specificity in which excess binding energy contribut
203 lly, we successfully tracked the survival of ZFN-edited human embryonic stem cells and their differen
204 s in murine models, demonstrating the use of ZFN-edited cells for preclinical studies in regenerative
207 ed partly substantial off-target activity of ZFNs targeting CCR5 and AAVS1 at six known and five nove
213 rchitecture and show that direct delivery of ZFNs as proteins leads to efficient endogenous gene disr
219 n, we highlight the therapeutic potential of ZFNs and TALENs and discuss future prospects for the fie
221 rs influencing the functional specificity of ZFNs, we compared the in vivo activity of ZFN variants t
224 d provides a proof of concept for the use of ZFNs for manipulating genes in the monarch butterfly gen
225 ds, and since our cloning system is based on ZFN and homing endonucleases, it may be possible to reco
227 previously been proposed to predict optimal ZFN and TALEN target sites did not predict mutagenicity
228 th of recognition DNA sequences by TALENs or ZFNs does not necessarily translate to a higher efficien
236 t quantification of these rhodopsin-specific ZFNs to induce a targeted double-strand break in the hum
238 and robustly increased the level of stable, ZFN-induced gene disruption, thereby providing a simple
239 ell-penetrating capabilities of the standard ZFN architecture and show that direct delivery of ZFNs a
240 ess binding energy contributes to off-target ZFN cleavage and suggest strategies for the improvement
243 gy remains unclear, both the bs and Tbc1d20 (ZFN/ZFN) mice are excellent model organisms for future s
246 e, generated from an allelic bs/+ X Tbc1d20 (ZFN/+) cross, exhibited cataracts and aberrant acrosomal
247 426del] deletion encoding a putative TBC1D20-ZFN protein with an in-frame p.[H140_Y143del] deletion w
254 etions (1-142 bp) that were localized at the ZFN cleavage site and likely derived from imprecise repa
255 exhibited somatic mutations localized at the ZFN target sites for seven out of nine targeted genes.
258 e or both zinc-finger proteins (ZFPs) in the ZFN dimer, as well as the option to skip bases between t
262 se event was associated with infusion of the ZFN-modified autologous CD4 T cells and was attributed t
263 n together, our studies demonstrate that the ZFN-generated Mdr1a(-/-) rat will be a valuable tool for
274 ep sequencing technology, we show that these ZFNs are highly specific for the CCR5 locus in primary c
278 treatments can be evaluated by transplanting ZFN-treated HSPC into immunodeficient mice, where the ex
280 seedlings induced to express the ADH1 or TT4 ZFNs exhibited somatic mutation frequencies of 7% or 16%
282 he mechanism of DSB by ZFNs requires (1) two ZFN monomers to bind to their adjacent cognate sites on
283 genome, that can be cleaved in vitro by two ZFNs: CCR5-224 and VF2468, which target the endogenous h
286 expression of endogenous cyclin D1, we used ZFN technology to insert a secreted luciferase reporter
288 f reporting endogenous gene activities using ZFN technology could be applied to other cancer targets.
291 knockouts in a pure NOD background by using ZFNs without potential confounding factors introduced by
292 by loss of SMC6B was further confirmed using ZFNs that target two other Arabidopsis genes, namely, TT
294 ty, and identified germ line mutations using ZFNs whose somatic mutations rates are well below the co
297 at a target locus, but it is unclear whether ZFNs can induce DSBs and stimulate genome editing at a c
299 simple ssDNA oligonucleotides in tandem with ZFNs to efficiently produce human cell lines with three