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1 en antiparallel beta strands stacked between alpha helices.
2 iparallel beta-sandwich wrapped in two short alpha helices.
3 f a beta sheet flanked with two antiparallel alpha helices.
4 proteins with curved beta sheets topped with alpha helices.
5 ers exhibit three highly conserved predicted alpha-helices.
6 s to a group of charged, E(R/K)-rich, single alpha-helices.
7 a central mixed beta-sandwich surrounded by alpha-helices.
8 transmembrane-spanning and five cytoplasmic alpha-helices.
9 of detergent molecules between transmembrane alpha-helices.
10 ygens and amide H(+)s four residues apart in alpha-helices.
11 beta-strands and random coil with two small alpha-helices.
12 nique beta-sandwich fold with short terminal alpha-helices.
13 ule scaffold that captures the topography of alpha-helices.
14 llel beta-strands along with two surrounding alpha-helices.
15 S domains, each comprising six transmembrane alpha-helices.
16 in (LBD), which consists predominantly of 11 alpha-helices.
17 residues stemming from the beta-strands and alpha-helices.
18 the binding domain entrance, flanked by two alpha-helices.
19 rrangements of four N-terminal transmembrane alpha-helices.
20 nded antiparallel beta sheet and a few short alpha-helices.
21 ng of three gatekeeping residues and several alpha-helices.
22 that porate cellular membranes by the use of alpha-helices.
23 the channel is closed by dense packing of 12 alpha-helices.
24 lel beta-sheet buttressed on one side by two alpha-helices.
25 r space and is likely to be composed of four alpha-helices.
26 y of inhibitory peptides to make amphipathic alpha-helices.
27 P) reveals a novel all-helix fold with seven alpha-helices.
28 interact with lipid bilayers as amphipathic alpha-helices.
29 etylcholine receptor formed by transmembrane alpha-helices.
30 ng the membrane domain of the enzyme via two alpha-helices.
31 llel homodimers formed by transmembrane (TM) alpha-helices.
32 ed of 25 repeats capped by N- and C-terminal alpha-helices.
33 rbcS) or only the surface-exposed algal SSU alpha-helices.
34 actions of macrodipoles between neighbouring alpha-helices.
35 n, resulting in a total of six transmembrane alpha-helices.
36 e of HIV gp41 and represents a bundle of six alpha-helices.
37 ized side chains in the first turn of the M2 alpha-helices.
39 esis studies suggest that at least predicted alpha-helices 2 and 3 are required for Aar activity.
40 two partially cross-reactive regions around alpha-helices 2 and 4 as well as a novel Art v 3-specifi
42 ic intermediates is structure and packing of alpha-helices 3 and 7 and the degree of structure in bet
43 ndicate structural flexibility is induced in alpha-helices 4 and 5, suggesting this region contribute
45 erine 145, tyrosine 178, and cysteine 189 on alpha-helices 6, 7, and 8, respectively, within zeta-iso
48 hange at the interface between the region of alpha-helices A/A' and the meander loop of the enzyme, w
49 tates involves movement of the even-numbered alpha-helices across the surfaces of the odd-numbered al
51 In E. coli and G. stearothermophilus, the alpha-helices adopt an "up" state where the alpha-helice
53 del is that activated Bak and Bax insert two alpha-helices, alpha5 and alpha6, as a hairpin across th
54 pectroscopy, that COR15A starts to fold into alpha-helices already under mild dehydration conditions
55 in fold containing three orthogonally packed alpha helices and a 310 helix, FF6 contains an additiona
61 amino-terminal domain (NTD) comprising seven alpha-helices and a beta-hairpin, a carboxy-terminal dom
62 ure displays a novel fold comprised of seven alpha-helices and a highly curved three-stranded antipar
63 s a core scaffold composed of a layer of two alpha-helices and a layer of three-stranded antiparallel
64 s core region is composed almost entirely of alpha-helices and assembles into stable homodimers in so
65 helmingly a random coil, with the structured alpha-helices and beta-sheets being confined to the geno
67 25 nm, and the energy difference between the alpha-helices and beta-sheets is 4.9 kcal/mol per helica
68 act parallel and antiparallel arrangement of alpha-helices and beta-strands, enumerated all possible
69 rization interface, primarily contacting the alpha-helices and beta2-beta3 loops from each monomer.
72 we demonstrate that PaaR2 mainly consists of alpha-helices and displays a concentration-dependent oct
75 he N-terminal domain of CdaS consists of two alpha-helices and is attached to the C-terminal catalyti
76 suggests that pATOM36 is composed largely of alpha-helices and its assembly into the outer membrane i
78 w sense, pitch, and polarity between peptide alpha-helices and oligourea 2.5-helices suggest that a t
80 was found in a subset of buried positions in alpha-helices and pervasively in the underlying beta-str
83 eavages were consistently observed for three alpha-helices and the adenosine binding regions for AK c
84 -defined secondary structures, in most cases alpha-helices and their orientation is given by a tilt a
85 common evolution from disordered monomers to alpha-helices and then to beta-sheets when the proteins
86 is formed by regular (i.e. beta-strands and alpha-helices) and non-periodic structural units such as
88 arboxy-terminal domain (CTD) comprising four alpha-helices, and a flexible linker with a 310-helix co
89 ts structure, comprising eight transmembrane alpha-helices, and catalytic site are distinct from thos
91 omains share a six-stranded beta-sheet, five alpha-helices, and conserved motifs similar to those req
92 d by layered arrangements of beta-sheets and alpha-helices, and how these arrangements became globula
93 which are intermittently surrounded by four alpha-helices, and the C terminus, including the alpha5-
94 the ISRs reside in a cluster of five surface alpha-helices, and the carboxyl-terminal region (CTR), a
95 core structure composed of six antiparallel alpha-helices, and this structure is considered instrume
96 ructure with an alpha/beta topology in which alpha-helices are at the N- and C-terminal ends of the m
98 e of a beta-sheet topped by two semiparallel alpha-helices are discussed in this review, highlighting
99 ds proceed via global unfolding, whereas the alpha-helices are free to swap locally in the native bas
100 minal alpha-helices; when ATP is scarce, the alpha-helices are proposed to inhibit ATP hydrolysis by
101 of the binding cavities is restored if these alpha-helices are repositioned extrinsically, suggesting
104 iled-coil assemblies formed between or among alpha-helices are the most regular feature of tertiary a
107 nds report on the hydration of transmembrane alpha-helices as concluded from vibrational coupling exp
108 have evolved to efficiently utilize protein alpha-helices as molecular electrets, the synthetic coun
109 ubulin secondary structure at the H8 and H10 alpha-helices as well as at the S9 beta-sheet, where alp
112 sordered in water, but fold into amphipathic alpha-helices at high osmolyte concentrations in the pre
113 the nuclear receptor PPARalpha (increase of alpha-helices at the expense of decreasing beta-sheets),
114 op spanning K61 to I72 and flanked by longer alpha-helices at the outer edges, and basic side grooves
116 hanges in skin protein secondary structures (alpha-helices, beta-sheet, random coils and turns), as e
117 tifies the secondary structures of proteins (alpha-helices, beta-sheets and other structures) in EM m
118 ing peak areas associated with turns, bends, alpha-helices, beta-structures, and random coils for ina
119 affect T cell alloreactivity, whereas in the alpha helices, both compatible and noncompatible amino a
120 , each consisting of 42 aa arranged in three alpha-helices, build an elongated superhelical structure
121 are significantly more extended than linear alpha-helices but less extended than straight chains.
124 e that interfacial tertiary contacts between alpha-helices can regulate siRNA cytoplasmic delivery an
126 nalysis of SERPINA1 identified 3 amphipathic alpha-helices clustered in the N-terminal domain of the
127 dues at the C-terminus form a bundle of five alpha-helices co-linear with the five-fold axis of symme
128 Subunit D (ScD) consists of a long pair of alpha-helices connected by a short helix ((79)IGYQVQE(85
131 C-terminal domain of ORF57, which is rich in alpha-helices, contributes to homodimerization of ORF57
132 ble beta-sheet structure with tightly packed alpha-helices decorating the exterior of the fibrils.
134 rolysis by assuming an "up" state, where the alpha-helices, devoid of ATP, enter the alpha3beta3-cata
135 o the stable beta-sheet core, the peripheral alpha-helices display significant local fluctuations lea
136 g altered thermostability and disruptions to alpha helices, disulfide bonds, or the permeation pore.
137 n, peptides corresponding to two out of four alpha helices dominated the response in both vaccinees a
138 The folding of polypeptide side chains into alpha-helices dramatically enhances the polymerization r
139 consisting of a ring of seven transmembrane alpha-helices enclosing a large (>12,000 angstrom(3)) in
140 ms a novel fold consisting of 12 amphipathic alpha-helices enclosing an exceptionally large hydrophob
141 alpha-helices adopt an "up" state where the alpha-helices enter the alpha(3)beta(3)-domain and preve
142 ld symmetrical structure that comprises four alpha-helices enwrapping a pair of antiparallel beta-str
143 eveal that the variance in structure maps to alpha-helices flanking the central beta-sheet and not to
145 s as an ATP molecule is not bound to the two alpha-helices forming its C-terminal domain, probably be
146 N-terminal domain of yeast Scc1 contains two alpha helices, forming a four-helix bundle with the coil
147 chimeric Arabidopsis SSUs containing the SSU alpha-helices from Chlamydomonas reinhardtii can form hy
148 "head-to-tail" homodimer, formed between two alpha-helices from each monomer, with three Zn(II)-bindi
150 short intracellular loop connecting membrane alpha-helices H and I (H-I loop), the AD, CBS1, and CBS2
157 ligands through aspartates on transmembrane alpha-helices III (canonical Asp(3.32)) or V (non-canoni
158 a unique binding domain consisting of three alpha helices in addition to a typical GT-A-type glycosy
159 dly, we find that at low ionic strength, the alpha helices in H2A-H2B are frequently sampling partial
163 or bind lipid surfaces via their amphipathic alpha-helices in a manner typical of apolipoproteins.
164 re packed against one another and flanked by alpha-helices in an alphabetabetaalpha arrangement remin
165 f the beta2AR, the S1P1, or the kappaOR form alpha-helices in crystal structures but lack significant
168 late the binding affinity and specificity of alpha-helices in proteins, resist proteolytic degradatio
169 The isolated protein folds into amphipathic alpha-helices in response to increased crowding conditio
170 els are probably located in a bundle of four alpha-helices in the a-subunit that are tilted at approx
172 s 21-46, the long alpha-helix binds to other alpha-helices in the C-terminal region of predominantly
173 hod is guided by correspondences between the alpha-helices in the density map and model, and does not
174 l of orientation in the cross-beta core, and alpha-helices in the disordered portions of the fibrils.
176 the molecular arrangement of the N-terminal alpha-helices in the filament core, including a melted c
177 p110beta as consisting of two perpendicular alpha-helices in the helical domain that are adjacent to
178 skeleton of each wedge is provided by three alpha-helices in the membrane domains of the b-subunit t
180 lements in the acid unfolded and presence of alpha-helices in the molten globule state lead to intern
182 t a proline kink in M1 that separates pi and alpha helices, in both alpha (N217, V218 and P221) and n
183 polar residues provided by a bundle of four alpha-helices inclined at approximately 30 degrees to th
184 , the 3D structure is predicted to have four alpha-helices interlinked by three loops and a long C-te
185 hat serves as a scaffold for the hydrophobic alpha-helices involved in pH-dependent pore formation.
187 chains at the first turn of the pore-lining alpha-helices is a key determinant of the rate of ion pe
188 re also differs: A significant population of alpha-helices is found in chemically denatured configura
190 r of polyglutamine is very stable, dimers of alpha-helices lack the kinetic stability necessary to su
191 onclude that the structural integrity of the alpha-helices lining the central hole and this loop are
192 22Y substitution alters the positions of the alpha-helices lining the central hole of the PCNA ring,
193 ha-helix, M4, and the adjacent transmembrane alpha-helices, M1 and M3, retains the ability to flux ca
194 ormation of a monomeric state, where its two alpha-helices, N-terminal heptad repeat (NHR) and C-term
197 the development and validation of stabilized alpha helices of son of sevenless 1 (SAH-SOS1) as protot
198 se VirB homologs, and the transmembrane (TM) alpha helices of VirB10-like TraF form a 55-A-diameter r
199 experimental dimeric structures formed by TM alpha-helices of 21 single-pass membrane proteins (inclu
200 that octanoyl-CoA establishes with the four alpha-helices of ACBP and showed that the unfolding path
202 the mutation disrupts the N-terminus of the alpha-helices of dimeric beta-tropomyosin, a change pred
204 udy with yeast two-hybrid suggests that most alpha-helices of R16/17, except for the R17 alpha1 helix
206 l elements within the Linker2 region dock to alpha-helices of the coiled-coil domain, likely establis
207 t two Rab33B molecules bind to the diverging alpha-helices of the dimeric Atg16L1 coiled-coil domain.
210 ce is formed by the C-terminal anti-parallel alpha-helices of the histone fold extension (HFE) of the
211 r pore-forming mechanism of action involving alpha-helices of the N-terminal domain, whereas structur
212 models of PrP(Sc) retain most of the native alpha-helices of the normal, noninfectious prion protein
214 mino acid composition of two surface-exposed alpha-helices of the SSU: higher plant-like helices knoc
215 ylalanine (Phe) residue within the S2 and S3 alpha-helices of the voltage sensor domain (VSD) of Kv c
216 pha6' extending over the 2(nd) and the 3(rd) alpha-helices of Vta1NTD microtubule interacting and tra
218 stranded, antiparallel beta-sheet flanked by alpha-helices on each side, representing a unique oligom
221 The stalk extends via two parallel long alpha-helices, one in each of the related b and b' subun
224 ein complexes in the Protein Data Bank where alpha-helices or beta-strands form critical contacts.
225 lly generated three-dimensional models of TM alpha-helices positioned in membranes; (iv) amino acid s
227 is that the stabilization of the individual alpha-helices provides an optimum stability and allows f
228 amolecular (native) beta-sheets (55.08%) and alpha-helices/random coils (30.51%), but upon heating fr
229 ) beta-sheets (60-80%) in gamma-livetin, and alpha-helices/random coils (60.59%) in alpha-livetin.
231 Coiled-coil interactions, between or among alpha-helices, represent the most common tertiary and qu
235 ere it interacts with the juxtaposed ends of alpha-helices shaping the narrow membrane-spanning pore.
236 re and it consists of three partially folded alpha-helices spanning residues 7-38, 41-46, and 58-73.
238 mensional (3D) structure is composed of four alpha-helices stabilized by four disulfide bonds, and a
239 loid-like architecture, in which amphipathic alpha helices stacked perpendicular to the fibril axis i
240 s reveal 12, mostly irregular, transmembrane alpha-helices surrounding a cavity with sugar- and H(+)-
243 flytrap (VFT) perception domains followed by alpha helices that extend into the cytoplasmic membrane.
244 of specific roles to particular residues and alpha helices that mediate individual steps of the BAX a
245 tified a novel Pincer domain composed of two alpha helices that physically tethers the C-terminal dom
246 erminal domain formed from a cluster of four alpha-helices that appears to distinguish this protein f
247 tein pores formed by two concentric rings of alpha-helices that are stable and monodisperse in both t
248 ces cerevisiae allowed identification of the alpha-helices that belong to the a subunit and revealed
249 ter sakazakii PriC forms a compact bundle of alpha-helices that brings together residues involved in
251 SERPINA1 contains a cluster of amphipathic alpha-helices that enable apolipoproteins to bind phosph
253 lia revealed a structure comprising the five alpha-helices that form the phospholipase catalytic modu
254 unique E2-binding domain that includes three alpha-helices that interact extensively with the "backsi
255 onally beneficial dynamic motion between the alpha-helices that is critical for the transmission of s
258 sin (PR), a protein with seven transmembrane alpha-helices that was found to assemble to hexamers in
259 simplistic combinations of beta-strands and alpha-helices, the actual properties and functions of th
261 e to reduce the kink in the pore-lining (S6) alpha-helices, thereby forming the helix bundle crossing
262 ed hydrophobicity to the hydrophobic half of alphaS helices, thereby stabilizing alphaS-membrane inte
263 nvolves allosteric realignment of C-terminal alpha-helices thus generating a binding surface for coac
264 otomers faced each other through the F and G alpha-helices, thus blocking the substrate access channe
267 cient nucleosome binders use short anchoring alpha helices to bind DNA, whereas weak nucleosome binde
268 nalysis revealed the hydrophobic face of two alpha-helices to be critical for membranous localization
269 ural behavior of individual beta-strands and alpha-helices to be targeted selectively by stopped-flow
271 econdary structure of proteins unfolded from alpha-helices to beta-sheets, loops and beta-turns.
272 es and undergo a dynamic transition from the alpha-helices to the beta-sheets, which marks the onset
273 ore pronounced tilt of the closed-channel M2 alpha-helices toward the pore's long axis narrows the pe
274 In the plastic regime, the three-stranded alpha-helices undergo a noncooperative phase transition
276 on liposome-reconstituted MscL transmembrane alpha-helices, using a 'virtual sorting' single-molecule
277 TOXCAT assay for interactions of isolated TM alpha-helices, we found that TM1, a Cx26 pore domain, ha
279 an ATP molecule bound to its two C-terminal alpha-helices; when ATP is scarce, the alpha-helices are
280 nal end was quite capable of forming several alpha-helices which was correlated with CD spectroscopic
281 encapsulated ferritin (EncFtn) has two main alpha helices, which assemble in a metal dependent manne
282 rophobic interactions among their N-terminal alpha-helices, which also anchor the pilin subunits in t
283 highly stereoselective attachment to protein alpha-helices, which permits accurate measurements of or
284 bound InsP3 rotates 55 degrees closer to the alpha-helices, which provide most of the protein's inter
285 o a site at the opening of two transmembrane alpha-helices, which results in the scissile bond being
286 binding domains are composed of two extended alpha helices with no apparent surfaces for small-molecu
287 elices 6, 7, and 10 are separate amphipathic alpha-helices with a calculated periodicity of T = 3.34
288 sient increase in hydration of transmembrane alpha-helices with a t(1/2) = 60 mus, which tallies with
289 V POD is formed by one pair of long parallel alpha-helices with another pair in opposite orientation.
290 al barrels, that is, preassembled bundles of alpha-helices with central channels, can be used as buil
291 lical bundle systems consisting of synthetic alpha-helices with either the sequence Ac-(LSLLLSL)3-NH2
293 ticlockwise rotational motion of interlinked alpha-helices with specific tilted helical extension.
294 -stranded parallel beta-sheet flanked by six alpha-helices with the putative catalytic triad, Asp-366
299 interpretation of the packing of individual alpha-helices within the fibers, and the construction of