コーパス検索結果 (1語後でソート)
通し番号をクリックするとPubMedの該当ページを表示します
1 and nuclear target Fe/S proteins are mainly archaeal.
2 ncing of the V4 region of both bacterial and archaeal 16S rRNA gene was used to characterize the micr
3 nguishable from the parent brine and overall archaeal abundance in halite showed no clear temporal tr
4 (2) and (3) yielded cell specific rates and archaeal activity distributions that were consistent wit
7 levant soil functional genes (SFGs, that is, archaeal amoA, bacterial amoA, nosZ, narG, nirK and nirS
9 ur analyses infer a relatively small-genomed archaeal ancestor that subsequently increased in complex
12 in situ hybridization (CARD-FISH) on >14 500 archaeal and bacterial cells (Methanosarcina acetivorans
13 activities across different arrangements of archaeal and bacterial cells and aggregate sizes were co
14 Proposed syntrophic interactions between the archaeal and bacterial cells mediating anaerobic oxidati
16 resentatives from ~50% of known higher-order archaeal and bacterial lineages, including several diver
20 ic of head-tailed viruses and, unusually for archaeal and bacterial viruses, a nearly complete replic
21 environment contain a myriad of uncultivated archaeal and bacterial viruses, but studying these virus
26 eins shared highest sequence similarity with archaeal and fungal enzymes, which peak in two redox tra
29 tial for the detection of various bacterial, archaeal, and eukaryotic microorganisms and facilitate t
32 ere, we measured fecal-associated bacterial, archaeal, and fungal communities of dairy cows from 2 we
34 om starved cells (Dps) - the extremely small archaeal antioxidant nanocage - is able to cross the glo
35 s annotated DNA and RNA sequence data of (i) archaeal, bacterial, eukaryotic and viral genomes from c
39 edge gap through analysis of a metazoan-like archaeal CCD from Candidatus Nitrosotalea devanaterra (N
42 at explains how these larger fluctuations in archaeal cell cycle events contribute to cell size varia
44 en form the only structural component of the archaeal cell wall and are therefore important for cell
51 ped a soft-lithography method of growing the archaeal cells to enable quantitative time-lapse imaging
52 ion of genes encoding these unique programs, archaeal cells use gene regulatory networks (GRNs) compo
53 structure-function relationships of several archaeal chromatin proteins (histones, Alba, Cren7, and
54 nting further studies of the organization of archaeal chromatin, on both the organismal and domain le
55 rface of adjacent protein layers destabilize archaeal chromatin, reduce growth rate, and impair trans
56 to providing high-resolution descriptions of archaeal chromosome architectures, our data provide evid
59 so contained a nearly complete genome of the archaeal commensal Methanobrevibacter oralis (10.2x dept
60 s and in subsurface sediments, bacterial and archaeal communities are more divergent between location
62 es is hindered by uncertainty concerning the archaeal communities contributing to GDGT pools in moder
65 dosphere, rhizosphere and soil bacterial and archaeal communities were sampled and analyzed using 16S
69 y analysis of similarity tests indicated the archaeal community structures of smooth and pustular mat
71 uted in global oceans and dominate the total archaeal community within the upper euphotic zone of tem
73 eatment of brain abscess should contain anti-archaeal compounds such as imidazole derivatives in most
74 le analysis, we determined structures of the archaeal CP in complex with the AAA-ATPase PAN (proteaso
76 on) is a superfamily of common bacterial and archaeal defence systems active against diverse bacterio
77 otes evolved from a merger between a host of archaeal descent and an alphaproteobacterial endosymbion
78 s we have defined monophyletic bacterial and archaeal DGR lineages that expand the known DGR range by
79 lified by an expansive loss of bacterial and archaeal diversity and the identification of microbial l
80 nd nutrient cycles, and how this increase in archaeal diversity has expanded our view of the tree of
81 e dissimilarity of the pioneer bacterial and archaeal diversity was the shear rate and the membrane s
84 rformed on the structure and function of the archaeal DNA replication origins, the proteins that defi
86 s from various archaeal organisms across the archaeal domain of life show surprising levels of divers
89 tif are present throughout the bacterial and archaeal domains in the tree of life, suggesting that th
94 anded our view of the tree of life and early archaeal evolution, and has provided new insights into t
95 e reduction has been the predominant mode of archaeal evolution, our analyses infer a relatively smal
98 observations by comparisons with four other archaeal filamentous viruses whose structures we have pr
100 haeal pilin is remarkably similar to that of archaeal flagellin, establishing common evolutionary ori
102 Together, these results demonstrate that archaeal GDGT distributions can shift in response to ele
103 organized and how such organization impacts archaeal gene expression, focusing on conserved DNA-bind
104 ansfers, and gene losses contained in 31,236 archaeal gene families to identify the most likely root
106 e below the photic zone, where bacterial and archaeal genomes and proteomes undergo a community-wide
110 ysis revealed that many of the bacterial and archaeal genomes encode motifs that may be involved in m
112 ale scan of complete and draft bacterial and archaeal genomes in the NCBI RefSeq database reveals tha
114 n 36 groups of closely related bacterial and archaeal genomes reveals purifying selection affecting A
116 collection of closely related bacterial and archaeal genomes that provides several tools to aid rese
118 s the signs of complexity observed in Asgard archaeal genomes to the proposed role of mitochondria in
119 ill facilitate the analysis of bacterial and archaeal genomes using ecological and evolutionary theor
121 ularly critical for gene-dense bacterial and archaeal genomes(1-3) in which continued transcription w
122 Spt4-Spt5 complex are universally encoded in archaeal genomes, and here we demonstrate that both elon
123 ogeny of 10,575 evenly-sampled bacterial and archaeal genomes, based on a comprehensive set of 381 ma
125 ive inoviruses were also detected in several archaeal genomes, suggesting that, collectively, members
126 resent in 32% of all sequenced bacterial and archaeal genomes, that mediate protection against specif
127 34 clusters of closely related bacterial and archaeal genomes, we show here that terminal branches of
132 we identified over 90 putative bacterial and archaeal genomic families and nearly 300 previously unkn
133 fundamental drivers that shape bacterial and archaeal genomic properties remain uncertain (3-7) .
135 wo of three known groups of anion pumps, the archaeal halorhodopsins (HRs) and bacterial chloride-pum
139 er, our findings indicate that at least some archaeal histone paralogs have evolved to play distinct
140 with phylogenetic analysis to shed light on archaeal histone paralogs, their evolutionary history, a
146 sodium-coupled Asp symporter, Glt(Ph) is an archaeal homolog of glutamate transporters and has been
147 ransporter from Pyrococcus horikoshii, is an archaeal homolog of mammalian membrane transport protein
148 ell established, particularly within a model archaeal homolog, sodium, and aspartate symporter Glt(Ph
150 dea that a critical endosymbiosis between an archaeal host and a bacterial endosymbiont transformed t
151 ic' proteins in Archaea, indicating that the archaeal host cell already contained many key components
152 ition of the mitochondrial predecessor by an archaeal host cell fundamentally altered the topology of
153 identified and were found to replicate in an archaeal host species closely related to Metallosphaera
157 genomes of viruses that infect bacterial or archaeal hosts (viruses of eukaryotes will be added at a
158 tous double-stranded DNA viruses that infect archaeal hosts living in nearly boiling acid: Saccharolo
160 of the putative genes in the spindle-shaped archaeal hyperthermophile fuselloviruses have no sequenc
161 The CRISPR-Cas are adaptive bacterial and archaeal immunity systems that have been harnessed for t
163 high temperatures, solve 12 structures of an archaeal ketol-acid reductoisomerase (KARI) vitrified at
164 ranches in the genomic tree of bacterial and archaeal life and illustrate the unique and exciting adv
165 spite the central importance of S-layers for archaeal life, their 3-dimensional (3D) architecture is
166 on agricultural soils and many bacterial and archaeal lineages have the capacity to express respirato
167 r and mcr-like genes in genomes from diverse archaeal lineages suggest that methane metabolism is an
168 communities of anaerobic microbes, including archaeal lineages with potential to mediate oxidation of
169 ators showed significant variability between archaeal lineages, the conserved core of RbkR regulons i
170 rder Sulfolobales was one of the first named Archaeal lineages, with globally distributed members fro
173 erol dibiphytanyl glycerol tetraether (GDGT) Archaeal lipids has been linked to variation in environm
174 results suggest the degree of cyclization in archaeal lipids records a universal response to energy a
178 this activity with a crystal structure of an archaeal MCM hexamer bound to single-stranded DNA and nu
181 glycerol tetraethers (GDGTs) are distinctive archaeal membrane-spanning lipids with up to eight cyclo
182 of genes for the key enzyme associated with archaeal methane/alkane metabolism, methyl-coenzyme M re
186 rsity and seasonal assembly of bacterial and archaeal microbiomes of two perennial cellulosic feedsto
187 ith a pronounced shift in soil bacterial and archaeal microbiota structure towards a more consistent
188 single-molecule fluorescence imaging of the archaeal model glutamate transporter homologue Glt(Ph) f
190 enomics, and computational methods used with archaeal model organisms have enabled the mapping and pr
194 s have been isolated from various bacterial, archaeal, or eukaryotic organisms and have been evaluate
196 lobacterium salinarum, a hypersaline-adapted archaeal organism, grows exponentially at the single-cel
198 reveal further expansion in the diversity of archaeal organisms performing methane/alkane metabolism.
200 m-labeled GFPssrA substrate and an unlabeled archaeal PAN-20S system to obtain direct structural info
204 receptors found in 8 different bacterial and archaeal phyla genetically couple to metalloproteins rel
209 d and analysed genomes of an uncharacterized archaeal phylum (Candidatus Undinarchaeota), revealing t
211 escribe two populations of the deeply rooted archaeal phylum Korarchaeota, which were retrieved from
216 ntian Great Lakes, focusing on Bacterial and Archaeal picoplankton characterized via 16S rRNA amplico
217 We also show that the overall fold of the archaeal pilin is remarkably similar to that of archaeal
219 ion bypass intermediates formed by different archaeal polymerase holoenzyme complexes that include PC
220 lfur reduction within a single deeply rooted archaeal population and have implications for the evolut
221 e major taxa in the Archaea, suggesting that archaeal populations may have a greater contribution to
223 to census the bulk of Earth's bacterial and archaeal ("prokaryotic") clades and to estimate their ov
225 . acidocaldarius, we identify a role for the archaeal proteasome in regulating the transition from th
228 e that one of the last universally conserved archaeal proteins with unknown biological function is th
234 'CRISPRicity' metric, genes associated with archaeal proviruses and genes linked to Argonaute genes
235 ly 30,000 eukaryotic, 1500 bacterial, and 20 archaeal pseudokinase sequences into 86 pseudokinase fam
236 rius is the closest experimentally tractable archaeal relative of eukaryotes and, despite lacking obv
237 larchaeota suggested to comprise the closest archaeal relatives of eukaryotes, has helped to elucidat
238 s the current best candidate for the closest archaeal relatives of the eukaryotic nuclear lineage.
239 tional taxonomic units, enable bacterial and archaeal ribosomal RNA gene sequences to be followed acr
240 of wild-type and acetyltransferase-deficient archaeal ribosomes by cryo-electron microscopy provided
244 tate kinetics experiments, we also show that archaeal RNaseH2 rapidly cleaves at embedded ribonucleot
247 escribes the fascinating discovery that some archaeal Rubiscos contain a built-in assembly domain ins
248 detailed 3D electron cryomicroscopy maps of archaeal S-layers from 3 different Sulfolobus strains.
249 nd metagenomics were used to detect specific archaeal sequences in brain abscess samples and controls
252 is the first example of a virus infecting an archaeal species that is itself an obligate symbiont and
254 es across diverse eukaryotic, bacterial, and archaeal species, suggesting they result from positive s
256 tems are present in nearly all bacterial and archaeal strains and consist of a toxin that reduces gro
257 temperature, and acetyltransferase-deficient archaeal strains exhibit temperature-dependent growth de
259 discovery of the Asgard archaea, a proposed archaeal superphylum that includes Lokiarchaeota, Thorar
263 mmensal Methanosphaera stadtmanae as a model archaeal system, we show that the heteromeric complexes
265 olutionary relationships among bacterial and archaeal T4P filaments and provide insights into archaea
266 This triples the number of high resolution archaeal T4P structures, and allows us to pinpoint the e
269 hpol kappa, and hpol iota and Dpo4 from the archaeal thermophile Sulfolobus solfataricus We found th
270 here two Bacillus species plus bacterial and archaeal thermophiles contain related proteins of simila
271 Here we constructed a consensus unrooted archaeal topology using protein concatenation and a mult
272 In this review, we discuss key principles of archaeal transcription, new questions that still await e
274 G(+)), which was thought to be found only in archaeal tRNAs, was recently detected in genomic DNA of
276 tron microscopic (cryo-EM) structures of two archaeal type IV pili (T4P), from Pyrobaculum arsenaticu
277 d tryptophanyl pair can be combined with the archaeal tyrosyl or the pyrrolysyl pair in ATMW1 E. coli
278 logic, and microbiologic (bacterial, fungal, archaeal, viral, and protozoal) features of the intestin
279 p., MTIV provides a new system for exploring archaeal virology by examining host-virus interactions a
285 w family of archaeal viruses.IMPORTANCE Many archaeal viruses are quite different from viruses infect
287 d genomic analyses suggest that nonenveloped archaeal viruses have evolved from enveloped viruses by
288 on cryo-EM analysis, we show that a class of archaeal viruses possess hetero-hexameric MCPs which mim
290 an important source for the discovery of new archaeal viruses with unusual particle morphologies and
291 le-stranded DNA (dsDNA) bacteriophages, some archaeal viruses, and the herpesviruses share a structur
299 IV as the founding member of a new family of archaeal viruses.IMPORTANCE Many archaeal viruses are qu
300 from other known bacterial, eukaryotic, and archaeal viruses; this finding suggests that viruses inf