ライフサイエンスコーパス: archive

1 thy Korean individuals (KOVA; Korean Variant Archive).

2 e been updated, as recorded by NCBI assembly archive.

3 breast cancer slides using the Digital Slide Archive.

4 surgery available through the Cancer Imaging Archive.

5 tlas (TCGA), and the European Genome-Phenome Archive.

6 le due to the large number of samples in the archive.

7 nclude new features such as the Geis Digital Archive.

8 itous and geologically extensive sedimentary archive.

9 terogeneous types of searches across the PDB archive.

10 bulk and single-cell data sets in the public archive.

11 e of the size of the Protein Data Bank (PDB) archive.

12 nd released a KnowGRRF package in the R/CRAN archive.

13 els to large corpora of digitized historical archives.

14 hancing the data available from these fossil archives.

15 nomic sequence data are stored in the global archives.

16 nvironments where they can be trapped in ice archives.

17 data being generated and deposited in global archives.

18 hus allowing a higher time resolution in the archives.

19 tection from two coastal lacustrine sediment archives.

20 chronization of the considered environmental archives.

21 ulty of gathering and interpreting dispersed archives.

22 by a shortage of high-resolution terrestrial archives.

23 grate structural data from a range of public archives.

24 s as recorded in high precision paleoclimate archives.

25 ists, or collected from public sequence data archives.

26 he clumped isotope compositions of carbonate archives.

27 due to a relative dearth of highly resolved archives.

28 compress Ion Torrent BAM files for long term archiving.

29 eported in publications and included in data archiving.

30 ommendations for interpreting, reporting and archiving.

31 in disease, and thus, virtual pathology and archiving.

32 ssion of the Ion Torrent files for long term archiving.

33 ENCODE archives 2314 ChIP-seq tracks of 684 TFs and cofactors a

34 PGG.SNV archives 265 million SNVs across 220,147 present-day gen

35 We also describe the BioImage Archive, a deposition database for raw images derived fr

36 e, we present the new Arctic Animal Movement Archive (AAMA), a growing collection of more than 200 st

37 betaines, which were not found in the eight archived AFFFs.

38 ams in their entirety in a persistent public archive along with updated geolocation data for a subset

39 g with 3D macromolecular structural data for archiving, analyses, and visualization are central to fa

40 sed for training (90 from The Cancer Imaging Archive and 32 from the Cleveland Clinic, acquired betwe

41 ng Collaborative created a biological sample archive and analyzed levels of perfluoroalkyl substances

42 aborative (WFBC) created a biological sample archive and conducted a general suspect screen (GSS) to

43 Imaging data from The Cancer Imaging Archive and genomic data from The Cancer Genome Atlas fr

44 e or severe TBI, n = 4) from the Glasgow TBI Archive and Penn Neurodegenerative Disease Brain Bank.

45 PRIDE Archive and the related data submission framework have b

46 leeding was from a non-bronchial source were archived and details of imaging and treatment were recor

47 All R-mAb sequences and plasmids will be archived and disseminated from open source suppliers.

48 ed screening methods, where data sets can be archived and retrospectively mined as new environmental

49 cold periods recorded in terrestrial climate archives and historical records over the last 3000 years

50 ch platform for data sharing, publishing and archiving and a globally comprehensive data set for onwa

51 hed the reference standard using the picture archiving and communication system lesion marks of each

52 ere retrospectively queried from the picture archiving and communication system.

53 mputed tomography (CT) images in the Picture Archiving and Communication Systems (PACS) with liver no

54 radiological information systems and picture archiving and communication systems (PACS), a huge numbe

55 HIPAA-compliant retrospective study, picture archiving and communication systems of two tertiary refe

56 perplastic polyps, obtained from the picture archiving and communications system database in a tertia

57 odalities were sent by an EMR-linked picture-archiving and communications system to the respective de

58 tes in the deposition, curation, validation, archiving and dissemination of macromolecular structure

59 lt, researchers face serious challenges when archiving and finding information that relates to their

60 We show how archiving and mining of intraoperative hemodynamic data

61 alization methods, combined with appropriate archiving and sharing approaches, to tackle the big data

62 all of the metagenomes in the sequence read archive, and found that they are present at levels that

63 ere previously collected by the Gun Violence Archive, and then linked by the British newspaper The Gu

64 ity assurance and control, data publication, archiving, and reproducibility.

65 In conclusion, LEC-archived antigens are exchanged with migratory DCs, both

66 Here we show that the exchange of archived antigens between LECs and APCs is mediated by m

67 chival, yet LECs are unable to present their archived antigens to CD8(+) T cells, and instead transfe

68 and through LEC apoptosis, to cross-present archived antigens to circulating T cells.

69 Data from mollusc archives are especially important because of their globa

70 metadata, quality information, and links to archived assay data.

71 mes from 2015 to 2018 from the Sequence Read Archive at the NCBI.

72 d febrile infants (n = 913) and subsequently archived at -70 degrees C.

73 we show that a B6.Y (POS) colony bred and archived at the MRC Harwell Institute lacks the chromoso

74 All isolates were typed and archived at the time of receipt.

75 Molecular characterization of archived B. pertussis isolates (collected January 2007 t

76 We tested archived BAL fluid samples from 132 HCT recipients with

77 The interpretation of palaeoclimate archives based on oxygen isotopes depends critically on

78 We obtained serum samples from patients archived before a diagnosis of Crohn's disease (n = 200)

79 vailable databases such as the Sequence Read Archive beyond the capacity of traditional indexing meth

80 Few palaeoclimate archives beyond the polar regions preserve continuous an

81 By measuring entire classes of chemicals in archived biospecimens, exposome-wide association studies

82 ral observations underline the usefulness of archived bird of prey feathers in monitoring spatiotempo

83 We extracted DNA from archived blood smears and corresponding red blood cell p

84 ds of perfluoroalkyl substances (PFAS) using archived body feathers of white-tailed eagles (Haliaeetu

85 All archived bronchoalveolar lavage fluid (BALF) samples tha

86 more than 5 years as a public repository for archiving circular dichroism spectroscopic data and asso

87 icly available datasets in the Sequence Read Archive, cleans and parses messy, user-provided metadata

88 of the 2D and 3D data, and contemporaneous, archived clinical fetal MRI reports, which were compared

89 ly uncovering ultrastructural information of archived clinical samples, which may offer molecular ins

90 th FFPE tissue unlocks an enormous number of archived clinical samples; combined with LCM it allows u

91 notypic antibiotic susceptibility test on 17 archived clinical urine samples from patients diagnosed

92 An archived collection of 200 clinical Acinetobacter sp. Pr

93 Archaeological sites are paleoenvironmental archives containing unique ecological baselines with dat

94 In the absence of a local climate archive correlated to the Byzantine/Early Islamic transi

95 reduced barrier to entry because hosting and archiving costs were already covered.

96 Out of 127 CDC archived CSF samples from varied geographic locations, t

97 sb.org) enable efficient delivery of all PDB archive data.

98 ontrol; 2) import, restructure, version, and archive data; 3) rapidly publish new data in ways that e

99 Sept 16, 2019; monthly trends analysis used archived data closest to the 15th day of each month from

100 However, the vast majority of archived data remain unused.

101 criteria were employed in the analysis of an archived data set involving polyarthritic subjects, the

102 ts straightforward applicability to existing archived data using small modifications to standard RNA-

103 Because of the high-quality archived data, DIA selectivities were better than tradit

104 DNA is an excellent medium for archiving data.

105 pertension (RVH) were randomly selected from archived databases and were independently scored by thre

106 Archived datasets can be queried using full-text search

107 smids, and quantify antibiotic resistance in archived datasets.

108 s (WSSV) was reconstructed from ~ 2-year-old archived Davidson's-fixed paraffin-embedded (DFPE) shrim

109 most Mediterranean and Iberian paleoclimate archives, demonstrating that stable isotopes of GHW in s

110 Here we describe a novel palaeoclimate archive derived from the surface morphology and internal

111 A histological analysis was performed on archived DFPE shrimp tissue and a sample showing a high

112 In this work, we provide instructions for archiving digital information in the form of DNA and for

113 analysis of a randomized clinical trial used archived DNA samples and cancer family history of 315 pa

114 this article, we describe the Digital Slide Archive (DSA), an open-source web-based platform for dig

115 ts is available from the European Nucleotide Archive (E-MTAB-5446).

116 otide Archive (ENA), European Genome-phenome Archive (EGA), ArrayExpress and PRoteomics IDEntificatio

117 in 2013-2017, and retrospective analysis of archived eggs (2001-2017) at 3 of the 14 colonies indica

118 cular Biology Laboratory European Nucleotide Archive (EMBL-ENA) and Kabat as well as structure data f

119 y data exchange with the European Nucleotide Archive (ENA) and the DNA Data Bank of Japan (DDBJ) ensu

120 archives, including the European Nucleotide Archive (ENA), European Genome-phenome Archive (EGA), Ar

121 The growth of these archives exceeds our ability to process their content, l

122 populations 'resurrected' from a biological archive experiencing temperature increase over five deca

123 This archive extends from the 1930s to 2005, spanning the pro

124 isotopic compositions (delta(114/110)Cd) of archived fertilizer and soil samples from a 66 year-long

125 We further demonstrated that archived FFPE clinical specimens can be CLARITY-processe

126 d super-enhancer (SE) annotation in numerous archived FFPE samples from distinct tumor types.

127 d to measure alpha- and beta-activities from archived filters will make it possible to assess the ret

128 nary speleothems opens up a new paleogenetic archive for archaeological, paleontological and paleoenv

129 Ligandbook is a public database and archive for force field parameters of small and drug-lik

130 stern Mediterranean speleothem palaeoclimate archive for this period.

131 dary interventions, and visual outcomes were archived for analysis.

132 adient based on the position of the employed archives for each NAO reconstruction.

133 se of whole slide scanners and digital image archives, for maximizing concurrence and knowledge shari

134 l and palynological proxies to a sedimentary archive from the lake over the penultimate glacial-inter

135 d to inflammation and cardiovascular disease archived from a phase 3 clinical trial of tofacitinib an

136 180 were known CrAg-positive plasma samples archived from prior studies.

137 are then validated and permanently linked to archived genetic data stored in the National Center for

138 n in patients with HE was evaluated by using archived GSE41919.

139 riation among these H10N7 isolates and other archived H10 viruses recovered from human, seal, mink, a

140 aches that keep up with the pace of sequence archives has remained a challenge.

141 While inorganic components in ice archives have been studied extensively to identify past

142 DNA sequencing archives have grown to enormous scales in recent years,

143 The Human Genome Variation Archive (HGVA) tackles these challenges and facilitates

144 We tested DNA from archived histological sections, patient specimens from t

145 We tested DNA from archived histological sections, patient specimens from t

146 types and revealing cellular diversity, but archived human brain samples still pose a challenge to c

147 and use methods that can be applied to many archived human tissue samples that have been stored long

148 from the Virtual International Stroke Trials Archive-ICH trials dataset, Clot Lysis: Evaluating Accel

149 The CASABLANCA Study: Catheter Sampled Blood Archive in Cardiovascular Diseases [CASABLANCA]; NCT0084

150 hy in the CASABLANCA (Catheter Sampled Blood Archive in Cardiovascular Diseases) study.

151 The CASABLANCA Study: Catheter Sampled Blood Archive in Cardiovascular Diseases; NCT00842868).

152 f atoms in a web browser, keep the whole PDB archive in memory or parse it within few minutes on aver

153 systems, but also contaminants like mercury, archived in ice over centuries.

154 tein modifications observed in 3D structures archived in the Protein Data Bank (PDB).

155 g events have been identified in other paleo-archives in the Northern hemisphere.

156 ta are deposited in the appropriate EMBL-EBI archives, including the European Nucleotide Archive (ENA

157 I use 3.8 million archived inventory records to estimate the magnitude of

158 The PDB archive is available in MMTF file format through web ser

159 Elemental analysis of biogeochemical archives is an established technique used to study clima

160 Bank, the US data center for the global PDB archive, makes PDB data freely available to all users, f

161 ts, including SBML, CellML, PharmML, COMBINE archive, MATLAB, Mathematica, R, Python or C++.

162 This exploratory study used the Danish archived midgestational sera and their nationwide regist

163 pievos101/PopGenome) and the Comprehensive R Archive Network (CRAN).

164 ', which is available on The Comprehensive R Archive Network (CRAN).

165 l is freely available on the Comprehensive R Archive Network under the GPL-2 license.

166 nd can be installed from the Comprehensive R Archive Network, CRAN.

167 a public license through the Comprehensive R Archive Network.

168 nd coca are available on the Comprehensive R Archive Network.

169 every 8 weeks group, five (63%) of eight had archived non-nucleoside reverse transcriptase inhibitor

170 collected and 310 retrospectively collected (archived) NPS specimens with performance compared to tha

171 ssess the underlying biology by compiling an archive of 684 genes discovered in studies of monogenic

172 The Health Improvement Network (THIN), an archive of anonymised medical and prescribing records fr

173 Reactome functions both as an archive of biological processes and as a tool for discov

174 ese so-called "ghost tracks" comprise a rich archive of biomechanical and behavioral data that remain

175 s retrospectively collected from a radiology archive of CT examinations of the head performed from 19

176 These ANNs are used to analyse an archive of experimentally derived EQM image arrays from

177 an independent dataset and may represent an archive of exposures to lifestyle factors that are relev

178 p between DNA copy number alterations and an archive of gene expression signatures.

179 ClinVar is a freely available, public archive of human genetic variants and interpretations of

180 ation registry, a prospective hospital-based archive of IHCA data.

181 Lake basins thus may provide an important archive of inputs and aquatic responses to these organoc

182 ecord can potentially provide a quantitative archive of long-term ecological responses to past climat

183 sequences can be regarded as both a genomic archive of past infections and as an armour of potential

184 estimation includes review, assessment, and archive of point source geolocations, CO emission input

185 An archive of pre-computed domain annotation is maintained

186 CDD offers both an archive of pre-computed domain annotations as well as li

187 nd contribute to the development of a robust archive of skin images to be used for research.

188 ained from a mountain lacustrine sedimentary archive of the Iberian Peninsula.

189 g detection technique to the entire waveform archive of the regional seismic network in Southern Cali

190 CpG dinucleotides preserve a nearly complete archive of tissue-specific developmental enhancers.

191 Using three data sources-GFT: an archive of weekly ILI estimates from Google Flu Trends;

192 reduce the capacity of landscapes to provide archives of climate change.

193 Coastal boulder deposits (CBD) are archives of extreme wave events.

194 the focus of resurgent interest as potential archives of genomic data and for the unique perspective

195 estricting the region for which depositional archives of Hg can be derived.

196 characterize such changes and paleo-sediment archives of Holocene TC activity are temporally and geog

197 nd challenges of using legacy collections as archives of local and regional environmental proxies.

198 Public archives of next-generation sequencing data are growing

199 rican Journal of Ophthalmology (n = 26), and Archives of Ophthalmology (n = 16).

200 Copal and resin are archives of palaeontological and historical information,

201 arbon stores and habitats, and are important archives of past climatic and ecological information.

202 and offering an opportunity for sedimentary archives of past tsunamis, have mostly been omitted.

203 the American College of Surgeons, Endoscopy, Archives of Surgery, and Liver transplantation), publish

204 s key advances in interpreting environmental archives of the last millennium.

205 the key to decipher so far untapped glacier archives of the last millennium.

206 Clinical Trials, Web of Science, and online archives of the most relevant international oncology con

207 n autopsy-confirmed diagnosis of PD from the archives of the Queen Square Brain Bank in London, Unite

208 Finally, TSPV was found in Sequence Reads Archives of transcriptome of Gasterosteus aculeatus, fur

209 The European Nucleotide Archive offers a rich platform for data sharing, publish

210 Interpretations of palaeoclimate proxy archives often suggest hemispherically coherent variatio

211 dary interventions, and visual outcomes were archived on a customized spreadsheet for analysis.

212 es and is transferred to aquatic sedimentary archives on subdecadal to millennial time scales.

213 to perform multiplexed immunofluorescence on archived or clinical tissue specimens.

214 ed to evaluate the presence of SARS-CoV-2 in archived or recently collected biological fluids, in vit

215 Further study of archived PDNS tissue samples that were negative for PCV2

216 integration, knowledge-translation, and data archiving phases of CAN-BIND projects.

217 Archived plasma from 14 cAMR patients treated with the s

218 Archived plasma obtained pre- and post-TCZ treatment (8

219 s were evaluated at three laboratories using archived plasma samples from four countries (Nigeria, Ge

220 mework for creating, testing, versioning and archiving portable applications for analyzing neuroimagi

221 As an environmental archive, Posta Fibreno offers a temporal resolution whic

222 ects) who received an allogeneic HCT and had archived pre-HCT peripheral blood mononuclear cell sampl

223 The archive presents several challenges related to aggregati

224 eral Last Glacial pollen and rare speleothem archives principally located in the Mediterranean domain

225 s at NCBI analyze user-submitted data in the archive, producing gene and SNP annotation and generatin

226 cosmogenic radionuclide (10)Be in different archives provides a tool for such synchronizations.

227 The availability of data at public archives provides the hope that greater insights could b

228 r for Biotechnology Information (NCBI) is an archive providing free access to a wide range and large

229 fessionals Follow-Up Study participants with archived RBC specimens and no history of cancer at blood

230 excursion recorded in terrestrial and marine archives reflects massive carbon emissions into the exog

231 We obtained archived residual dried blood spots and data for nearly

232 ce runs deposited in the European Nucleotide Archive respectively.

233 y maternal deprivation (peer-rearing, PR) in archived rhesus macaque hippocampal samples (male, n = 1

234 We used the Internet Archive's Wayback Machine to approximate 'death dates' a

235 Archived saliva swabs from newborns with cCMV infection

236 planned, documented and executed at scale on archived samples and clinical data, with a total of ~85

237 tic mackerel) both in real-time and from the archived samples.

238 infections or for epidemiological studies of archived samples.

239 omparing 2013 or 2014 fish samples with 2011 archived samples.

240 hant Island (61.1 degrees S) as paleoclimate archives sensitive to regional temperature change, moder

241 were conducted on 3698 swine sera, including archive sera collected in 2009, as well as samples colle

242 alence of IDV antibody titers (11.7%), while archive sera from 2009 showed statistically significant

243 cination or GI.1 infection, as measured from archived sera.

244 .org), the US data center for the global PDB archive, serves thousands of Data Depositors in the Amer

245 matical models, and repositories in which to archive, share, and discover models.

246 ibians in the United Kingdom (UK), we tested archived skin swabs using a Bsal-specific qPCR.

247 rce-limited countries where large numbers of archived smear slides could be used for retrospective (a

248 n a simultaneous effort to help organize and archive some of the vast quantities of sequencing data t

249 retrospective, observational study of video-archived speaker introductions at the 2017 and 2018 ASCO

250 as performed on tumor DNA extracted from the archived specimens of 5 patients with CM who had been tr

251 e urogenital specimens; supportive data from archived specimens were also included.

252 We used archived SPM samples of the German Environmental Specime

253 luable retrospective information (when using archived SPM) for fish monitoring, complementing the cur

254 The Sequence Read Archive (SRA) contains raw data from many different type

255 well as those deposited in the Sequence Read Archive (SRA) database.

256 e Expression Omnibus (GEO) and Sequence Read Archive (SRA) is still a grossly underutilized resource

257 The NCBI's Sequence Read Archive (SRA) promises great biological insight if one c

258 eriment are deposited at NIH's Sequence Read Archive (SRA) under the accession number SRP158510.

259 hnology Information's (NCBI's) Sequence Read Archive (SRA) via unique persistent identifiers.

260 e Expression Omnibus (GEO) and Sequence Read Archive (SRA).

261 ists, or collected from public sequence data archives such as NCBI.

262 tory settings and found it in Sequence Reads Archives, suggesting that experiments using sticklebacks

263 Ice cores are climate archives suitable for the reconstruction of past atmosph

264 used on the novel use of eDNA extracted from archived suspended particulate matter (SPM) for identify

265 All 34 (100%) archived swabs from newborns with cCMV infection were po

266 Archived T. vaginalis isolates from the enrollment visit

267 ion and on a dataset from the Cancer Imaging Archive (TCIA).

268 DB) provides an integrated portal to the PDB archive that streamlines access for millions of worldwid

269 arctica, in contrast to most other Antarctic archives that favour eccentricity-paced forcing over the

270 culty of locating and interrogating suitable archives that have the potential to preserve such inform

271 ChimerSeq module is designed to archive the fusion candidates from deep sequencing data.

272 first describe the new architecture of PRIDE Archive, the archival component of PRIDE.

273 le repositories, including the Sequence Read Archive, the Metagenomics Rapid Annotation through Subsy

274 archers evaluate who their users are, how to archive their research outputs to encourage findability,

275 The list was archived, then we randomly assigned clusters (1:1) to ei

276 Archived tissue from CIN2+ lesions was tested for 37 HPV

277 Archived tissue from CIN2+ lesions was tested for 37 typ

278 Thousands of frozen, archived tissue samples from the human central nervous s

279 When available, archived tissue was evaluated for aberrations in the PI3

280 Archived tissues and stored peripheral blood samples fro

281 records from northern Borneo are invaluable archives to detect regional ENSO and PDO impacts, and th

282 adulthood using otolith (ear stone) chemical archives to identify patterns in time- and size-selectiv

283 luate coupled metal isotopes and sedimentary archives to increase constraint.

284 repositories (e.g., the European Nucleotide Archive) to ensure reproducibility.

285 des and >90 transformation products (TPs) in archived topsoil samples from the Swiss Soil Monitoring

286 peutic inhibition of putative targets in VS, archived tumor specimens, fresh tumor cells derived from

287 We obtained archived tumor tissues and baseline plasma samples from

288 RJNA324705; from the European Genome-phenome Archive under accessions EGAD00001004352 and EGAD0000100

289 uscript are available from the Sequence Read Archive under accessions PRJNA278450, PRJNA312948, PRJNA

290 de technique was used to measure fluoride in archived urine samples taken from mothers during pregnan

291 q runs in 264 species in European Nucleotide Archive, using Representational State Transfer.

292 g needs for currency and stability by having archived versions, (viii) contributors need appropriate

293 suggest that strict chromatin modulation is archived via stepwise mlonRNA-initiations.

294 However, exchange of archived viral antigens is mediated only by BatF3-depend

295 f single cell RNA-Seq datasets in the public archives, we have now extended Expression Atlas with a n

296 erials and Methods MR images from a clinical archive were used and data were deidentified.

297 Further analyses of such biotic archives will enable researchers to quantify the effects

298 31, 2009, were obtained from Yale Pathology Archives with a range of expression of PD-L1.

299 imple steatosis from the Royal Free Hospital Archives with both clinical data and sufficient material

300 Archived Ziehl-Neelsen-stained sputum smears were used t