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1 tor's binding loop (encompassing the contact beta-strand).
2 1) included in a "kink" followed by an extra beta strand.
3 cific mutation SY242CS, located in the third beta strand.
4 tein in the crystal lattice to form an extra beta-strand.
5 a disordered solvent-exposed amino-terminal beta-strand.
6 acting in an antiparallel fashion with a PDZ beta-strand.
7 uence-independent manner by inducing a short beta-strand.
8 resulting in a shortening of the C-terminal beta-strand.
9 posed of domains formed by alpha helices and beta strands.
10 led the LytTR domain, which mainly comprises beta strands.
11 he parallel/antiparallel organization of the beta strands.
12 boxylated agarose use a scaffold of unpaired beta-strands.
13 the peptide hydrogen bonded between parallel beta-strands.
14 n-like shape composed of mostly antiparallel beta-strands.
15 31 and 157, which increased the formation of beta-strands.
16 the orientation of residues in transmembrane beta-strands.
17 of only approximately 4.8 A between stacked beta-strands.
18 r by packing of their hydrophobic C-terminal beta-strands.
19 rils differ in intermolecular arrangement of beta-strands.
20 ace of hbeta2m containing the A, B, E, and D beta-strands.
21 consistent with the behavior of amphipathic beta-strands.
22 ty and two D-lysines to limit the lengths of beta-strands.
23 n partially solved and are made up mainly of beta-strands.
24 f intrinsically disordered domains (IDDs) or beta-strands.
32 Ser(P)(279)to interact with the back face of beta-strand 3 (Tyr(286)is on the front face) and loop 2,
33 t coordination of Ser(P)(282)with the end of beta-strand 3 enables Ser(P)(279)to interact with the ba
34 putative dockerin-binding site, centered at beta-strands 3, 5, and 6, is likely to be conserved in o
35 local conformational changes in helix 2 and beta-strand 4, both of which are compromised to maintain
37 ng the N-terminal tail and a loop connecting beta-strands 4 and 5, consistent with interactions invol
40 SAM-binding fold but the region linking core beta strands 6 and 7 (the 'beta6/7 linker') has a unique
41 RD not involved in carbohydrate recognition (beta-strands 7-9; residues approximately 200-220), formi
42 constrained into either a 310-helix (1-6) or beta-strand (7-9) conformation, with variable numbers of
44 t beta-barrel made up of seven anti-parallel beta-strands along with two surrounding alpha-helices.
46 cal IgV-like topology including an extra "H" beta-strand and "clamping" disulfide, absent in known Ig
47 domain that interact with PCSK9, notably the beta-strand and a discontinuous short alpha-helix, and i
49 d an in-depth analysis of the alpha-helix-to-beta-strand and beta-strand-to-alpha-helix transitions a
50 flexible disulfide-anchored loop to a rigid beta-strand and by traditional cystatin domain swapping.
51 racy, with a blind three-state (alpha-helix, beta-strand and coil) secondary structure prediction acc
53 lding leads to the exposure of a hydrophobic beta-strand and nucleates aggregation which results in p
54 tructure, which includes the relocation of a beta-strand and repositioning of the functionally import
55 lyroll domain B was inserted between the 7th beta-strand and the 7th alpha-helix of the catalytic dom
57 allow the structural behavior of individual beta-strands and alpha-helices to be targeted selectivel
58 structure, which is formed by regular (i.e. beta-strands and alpha-helices) and non-periodic structu
59 monly depicted as simplistic combinations of beta-strands and alpha-helices, the actual properties an
61 and C-terminal subdomain consisting of eight beta-strands and an alpha-helix that adopts a substantia
63 ng advantage of self-sorting between peptide beta-strands and hydrocarbon chains, we have demonstrate
65 bular domain structure, consisting mostly of beta-strands and random coil with two small alpha-helice
66 eric medin comprising a stable core of three beta-strands and shorter more labile strands at the term
67 terfaces, one involving interactions of ABED beta-strands and the other involving GFCC'C'' beta-stran
68 are consistent with a mixture of beta-turn, beta-strand, and random-chain secondary elements in aque
69 widespread negative epistasis, especially in beta-strands, and a high frequency of negative sign epis
70 structure, formed from an elongated stack of beta-strands, and have a rigidity similar to that of sil
71 ed beta-barrel fold with mostly antiparallel beta-strands, and the loops extending out the beta-barre
72 ese experiments revealed that the N-terminal beta-strand-and, in particular, a single amino acid poly
73 n which the ATP-binding P-loop and adjoining beta strands are swapped between two chains in the dimer
74 acking interactions by which the constituent beta-strands are assembled hierarchically into protofila
75 ogen-bonded dimers are antiparallel, and the beta-strands are fully aligned, with residues 17-23 of o
76 e chemical shift assignments indicate that 4 beta-strands are present in the fibril's secondary struc
78 y high susceptibility to cleavage (loops and beta strands) as well as regions that were entirely unaf
79 can be achieved to atomic-level accuracy by beta-strand assembly or through metal-mediated interacti
81 eous lateral gate opening and sliding of the beta-strands at the gate interface for N. gonorrhoeae, i
82 B24) to a 60 degrees rotation of the B25-B28 beta-strand away from the hormone core to lie antiparall
83 able structures of VDAC proteins show a wide beta-stranded barrel pore, with its N-terminal alpha-hel
84 transfer structural motifs range from multi-beta-strand barrels, to beta-sheet cups and baskets cove
86 cF) consists of an N-terminal domain of four beta-strands (beta1-beta4) connected by four alpha-helic
89 a domain-swapped dimer in which the last two beta-strands (beta9 and beta10) are exchanged forming a
90 ded alpha-helix II and hairpin turns between beta-strands betaC-betaD and betaE-betaF as well as seve
92 ibrillogenic hotspot located at the CDR1 and beta-strand C of the protein, which was confirmed by sca
93 HTH) motifs asymmetrically arranged around a beta-stranded channel, too narrow to accommodate DNA.
94 peats are semirigid even though they exhibit beta-strand character and the proline-rich domains under
95 dual substrate specificity within the seven beta-strand class of lysine-specific methyltransferases,
96 hese results give insight into split protein beta-strand complementation and enhance a distinct appro
98 ed-monomeric conformation and a more regular beta strand configuration in an excited-state dimer, as
99 tory alteration in switch I, which adopted a beta-strand configuration normally provided by the delet
100 ich the ligand main chain adopts an extended beta-strand conformation by interacting in an antiparall
103 , which revealed that each molecule adopts a beta-strand conformation that stack together to form par
104 ture reveals that the peptide approximates a beta-strand conformation whose helical symmetry matches
105 due segment termed the stalk, which adopts a beta-strand conformation, instead of forming an alpha-he
109 ions, our experiments show that the extended beta-strand conformational state of PHF6((*)) is readily
111 g of two stacked beta-hairpins with opposing beta-strands connected by two parallel disulfide bonds,
112 ch repeat domain of PP32 is composed of five beta-strand-containing repeats anchored by terminal caps
114 teinase-assisted removal of their N-terminal beta strand, creating an extended hydrophobic groove tha
115 amyloidogenic conditions (pH6.4-3.7), where beta-strand D and regions of the D-E and E-F loops were
117 t (T142A) within the S/T region of the first beta strand delineates the kinetics of the interconversi
118 structure or changing from alpha helical to beta strand depending on the solvents and molecules adde
122 that rupture and re-insertion of individual beta-strands do not take place locally but require the S
125 bilized by a core domain assembled from four beta strands donated by one VipA and two VipB molecules.
126 gh backbone-to-backbone interactions at open beta-strand edges, in a manner that resembles the inter-
127 ntiparallel arrangement of alpha-helices and beta-strands, enumerated all possible topologies formed
128 ive strategies for mimicking alpha-helix and beta-strand epitopes have been developed, producing valu
129 he other beta-sheet are limited to the outer beta-strand F, which packs against strand F' in the tetr
131 ve substrates, which harbor mutations within beta-strands, fail to associate productively with the Ba
132 ty of amyloidogenic peptides to convert into beta-strands for their polymerization into amyloid fibri
134 d shape and showed a significant increase in beta-strand formation in the final tetramer unit relativ
137 he lipid-facing surface of the last two BamA beta-strands forms weaker, conformationally heterogeneou
138 ey Abeta self-recognition sites spanning the beta strands found in cross-beta protofibril structures,
139 tes dissociation of a noncovalently attached beta-strand from a circularly permuted split GFP, allowi
140 ted that detachment of the short, C-terminal beta-strand from the soluble fold exposes key amyloidoge
141 the hypothesis that increasing the number of beta-strands, from two to three, increases the stability
143 parallel beta-sheets have swapped their last beta-strands giving a novel sheet topology which is an i
145 er induce or stabilize secondary structures (beta-strands, helices, reverse turns) in short peptide s
149 truncated GFP by substituting as a surrogate beta-strand in the groove vacated by the native strand.
151 r of Abeta42 molecules, each containing four beta-strands in a S-shaped amyloid fold, and arranged in
154 tation results in a deletion of the last two beta-strands in NBD2 and the whole C-terminal region, we
155 f NBD2 reveal the importance of the last two beta-strands in NBD2 for maintaining proper gating funct
156 e Sec61/SecY complex to translocate IDDs and beta-strands in the absence of alpha-helical domains.
158 tenon' motifs are shown to join neighbouring beta-strands in the C-terminal barrel domain, and mutati
159 psin-like protease conformation in which two beta-strands in the core of the protease domain undergoe
160 inding, is a flexible loop that connects two beta-strands in the cytokine-binding domain (DII) of IL-
161 rn break crucial hydrogen-bonds bridging two beta-strands in the Greek key motifs at the "tyrosine co
163 bility mapping to identify several potential beta-strands in the Tom40 protein in isolated mitochondr
167 al differences occur in loops connecting the beta-strands, in surface electrostatics used to dock the
168 ructure becomes more stable as the number of beta-strands increases, via comparisons among peptides d
170 en compensated for by increased intersubunit beta-strand interactions at the icosahedral 3-fold axes.
171 ing alpha-subdomain compaction, facilitating beta-strand intercalation, and optimizing translation ki
172 mbrane, but it is unclear whether it threads beta-strands into the lipid bilayer in a stepwise fashio
173 located in the GTPase domain on a conserved beta strand is part of an aromatic network in the core o
174 ctations, NMR data indicate that this second beta-strand is organized into a parallel beta-sheet desp
175 stinct, second conformation wherein the last beta-strand is retracted to extend the Ser65 loop and sh
176 with a parallel in-register organization of beta-strands is capable of seeding the conversion of ful
177 observed in a parallel orientation with the beta-strands, is a typical feature of type A CBMs, altho
179 hereas peptoid substitutions in the opposing beta-strands led to "chameleonic" species that were rigi
180 s that the C-terminal tail of STING adopts a beta-strand-like conformation and inserts into a groove
185 uent hairpin fragments and comparable-length beta-strand-loop-beta-strand models, indicate 2-state fo
187 (OM) beta-barrel proteins composed of 12-18 beta-strands mediate cellular entry of small molecules i
191 otease accessibility studies, support the 19 beta-strand model for Tom40 with the C-terminal end of t
193 ments and comparable-length beta-strand-loop-beta-strand models, indicate 2-state folding for all top
196 2 site 2 TQC motif forms a uniquely extended beta-strand, not observed in other dynein light chain-ta
200 de-bond crosslinking, we find that the first beta-strand of a laterally 'open' form of the BamA beta-
201 A chimaera S-peptide composed of the 10th beta-strand of GFP (s10) and a kinase substrate peptide
202 l, placed at the N-terminal end of the first beta-strand of Het-s fibrils, is significantly reduced i
203 and sfCherry11 are derived from the eleventh beta-strand of super-folder GFP and sfCherry, respective
205 x of the muscle endplate AChR is linked to a beta-strand of the extracellular domain that extends to
208 ly heterogeneous interactions with the first beta-strand of the substrate that likely represent inter
210 ions in WDR1 affecting distinct antiparallel beta-strands of Aip1 were identified in all patients.
212 etwork flips nearly 90 degrees , and the two beta-strands of each monomeric unit move apart, to give
213 selective loss of O-Man glycans on specific beta-strands of EC domains, suggesting that each isoenzy
215 r structure but intercalates between the two beta-strands of the amyloid fibril and binds to hydropho
216 eta-barrel of BamA to induce movement of the beta-strands of the barrel and promote insertion of the
217 we identified a "latch" between the C and D beta-strands of the binding face as the source of the PD
218 e C-terminal helices or the three N-terminal beta-strands of the catalytic domain face the membrane.
220 highly conserved sites localized to specific beta-strands of their extracellular cdh (EC) domains.
223 ns reveal that interactions between shearing beta-strands on the threaded and knotting loops provide
224 r interactions with MinD, giving rise to a 4-beta-stranded "open" structure through an unknown mechan
225 h at the C terminus, whereas the presence of beta-strands or only a short alpha-helical stretch leads
226 We corroborated this unexpected scheme for beta-strand organization using multiple two-dimensional
227 Ig-like fold encompassing seven antiparallel beta-strands organized in two beta-sheets, packed into a
228 atic interactions across non-hydrogen-bonded beta-strands outside the iLBPs, arguing for the generali
229 lical monomers are less stable than those of beta-strands, partially due to the lack of a consistent
232 hanges to Val(8) on the exterior side of the beta-strand, possibly through contacts to Lys(18) Thus G
233 te that strictly alternating arrangements of beta-strands predominate in coassembled CATCH structures
234 AP1, revealed an extension of the N-terminal beta-strand previously shown to cross between protomers
235 uite different characteristics: The swaps of beta-strands proceed via global unfolding, whereas the a
238 egatively charged and is occupied by a short beta-strand, referred to as the intrinsic ligand, explai
239 escent protein (GFP), i.e., split GFP with a beta-strand removed, that were found to behave different
240 rvation of a continuous 20-residue elongated beta-strand (residues 39-58), the latter being a salient
242 O binds to TRiC directly, mainly through its beta-strand rich, DNA-binding domain (AML-(1-175)), with
244 X-ray scattering (SAXS) data show that this beta-strand-rich conformation converts the PE membrane t
245 tor, NDUFAF5, belongs to the family of seven-beta-strand S-adenosylmethionine-dependent methyltransfe
246 he results suggest that specific residues in beta strand S2 of FtsZ affect the conformational switch
249 pic labels at I32, M35, G37, and V40 exhibit beta-strand secondary chemical shifts in 2-dimensional (
250 We present solid-state NMR measurements of beta-strand secondary structure and inter-strand organiz
251 hemical shifts for EmrE were consistent with beta-strand secondary structure for the loop connecting
253 omains, which are each assembled from paired beta strands secured by disulfide bonds and grasp two si
254 pts a beta-helical architecture, in which 18 beta-strand segments are arranged in six consecutive win
255 h of BacA filaments, and the distribution of beta-strand segments identified by solid-state NMR, we p
256 drophobic residues located in the identified beta-strand segments suggest that bactofilin folding and
257 repeat unit comprising at least two extended beta-strands, separated by a turn stabilized by a Asp(25
259 cs experiments indicated that the N-terminal beta-strand shapes the broader ATG8 interactor profiles,
261 d beta-barrel consisting of six antiparallel beta-strands similar to what was observed in the hepatit
263 topology formed by 2 sheets of antiparallel beta strands stabilized by the hallmark disulfide bond b
264 ystine knot structure, with two antiparallel beta-strands stabilized by three disulfide bridges.
267 oligomers are characterized by a near random beta-strand stacking, leading to a distinct amorphous ph
269 3 (CDR3H) that folds into a solvent-exposed beta-strand "stalk" fused to a disulfide crosslinked "kn
271 ed hairpin feature is its anti-parallel, two beta-strand stem, which we show by mutagenesis to be cri
274 domains display a similar three antiparallel beta-strand structure and interact with the same Cx43CT(
275 ETTA and MD simulations resulted in a unique beta-strand structure distinct from the conventional amy
278 tend to distances commensurate with extended beta-strand structures within the earliest stages of agg
279 yl group of the terminal adenosine towards a beta-strand, such that an aminoacylated tRNA at this pos
280 only loops but also rigid alpha-helixes and beta-strands, suggesting their involvement in allosteric
281 he isolated TrkAIg2 domain crystallizes as a beta-strand-swapped dimer in the absence of NGF, occludi
284 R) spectroscopy, we observe that the pair of beta-strands that mediate dimerisation partially unfold
285 result in the ordering of two anti-parallel beta-strands that protrude from each monomer and allowed
287 ion into amyloid fibrils, they also use such beta-strands to stabilize the disrupted catalytic site r
288 ithin the N-terminal domain, which undergoes beta-strand-to-alpha-helix and alpha-helix-to-beta-stran
289 alysis of the alpha-helix-to-beta-strand and beta-strand-to-alpha-helix transitions and domain motion
290 structural features that included an unusual beta-strand topology, a number of extended loops and a p
291 eta-strand-to-alpha-helix and alpha-helix-to-beta-strand transitions during catalysis, interacts with
292 a-helical domains have to precede the IDD or beta-strands, whereas in mammalian cells, C-terminally l
293 point, causing the local formation of short beta-strands, which move the path of the chain by 120 de
294 lar oligomers have more parallel in-register beta-strands, which ultimately lead to amyloid fibrils,
295 nterfered with the interaction of a collagen beta-strand with the beta-sheet structure of Fn modules
296 ayers of beta-sheets possessing antiparallel beta-strands with each being anchored by a pair of cyste
297 eta-strands and the other involving GFCC'C'' beta-strands, with the former burying one prominent glyc