ライフサイエンスコーパス: burrow

1 say), and behavioral biomarkers (feeding and burrowing).

2 itting these species to either run faster or burrow.

3 number of individuals that shared a sleeping burrow.

4 in 'larders' near the sleeping quarters in a burrow.

5 serves as a wedge to extend the crack-shaped burrow.

6 abs (Carcinusmaenas) into intertidal Sesarma burrows.

7 als need to remember the locations of escape burrows.

8 live in restricted regions, e.g., near their burrows.

9 concomitant decline in the density of animal burrows.

10 structured environments such as a network of burrows.

11 subterranean rodents inhabiting underground burrows.

12 the underlying transition layer of discrete burrows.

13 uch as during events of preferential flow in burrows.

14 areas and narrow tunnels, resembling natural burrows.

15 nable evasive behaviors such as swimming and burrowing.

16 ers that influence biogeochemical cycles via burrowing.

17 pecies-typical behaviors such as digging and burrowing.

18 ood aversion, hypermobility, and cooperative burrowing.

19 dy and fins to jumping, flying, walking, and burrowing.

20 ease to within the optimal range for Sesarma burrowing.

21 is time, which include trails, trackways and burrows(1-3).

22 reas P. maniculatus dig short, single-tunnel burrows [2-4]-were intact in juvenile burrowers.

23 These results show that the burrowing ability of a detritivore can determine whether

24 or-detritivore-plant interaction chains, the burrowing ability of plant-facilitating detritivores det

25 drawbacks for characterization of C. elegans burrowing ability, here we use the optically transparent

26 up to 75% lower energy reserves and reduced burrowing activity in M. liliana.

27 End points measured were: survival, burrowing activity, histopathological lesions, and metal

28 King Baboon spider, Pelinobius muticus, is a burrowing African tarantula.

29 r close association with abundant bilaterian burrows also indicates that they could tolerate and may

30 were trained to locate a single open escape burrow among 6 possible locations.

31 reis virens in making and moving into such a burrow amounts to less than one-tenth of the force it ne

32 and high bioturbation (bivalve and actively burrowing amphipod, Victoriopisa australiensis).

33 tailed study on the effects of Macaronichnus burrows, an ichnotaxon usually related to hydrocarbon ex

34 reviously, parameters such as the latency to burrow and the complexity of the burrow systems in subst

35 ffect behavioral drive (i.e., motivation) to burrow and thereby affect both the developmental timing

36 n backcross hybrids, we show that precocious burrowing and adult tunnel length are genetically correl

37 The burrowing and feeding activities of benthic organisms ca

38 active behaviors such as grooming, rearing, burrowing and locomotion increased.

39 asting responses to climatic factors between burrowing and non-burrowing species.

40 Crayfish burrows and molluscan body fossils, abundant below and a

41 ociated with the occurrence of benthic fauna burrows and seagrass roots.

42 e allows the female priority access to their burrow, and in doing so dramatically increases his proba

43 learned in this respect from nature: Diving, burrowing, and hibernating animals living in diverse env

44 due in part to lateral reworking, diffusion, burrowing, and perhaps Milankovitch cyclicity.

45 itable size modification probably almost any burrowing animal could be tested in it.

46 Burrowing animals disrupt these flood layers, erasing th

47 oil thereby putting it out of reach of most burrowing animals.

48 Larger and more elaborate fossil burrows appear near 543 million years ago, the beginning

49 Moreover, the well-known differences in burrow architecture between adults of these species-P. p

50 This burrow architecture is in contrast with the small, simpl

51 The burrows are formed by the foot of each bivalve, which ca

52 had higher live burrow counts (4.2 and 13.7 burrows as compared to 1.47 and 7.53 burrows per 62.5 m(

53 The Virtual Burrow Assay simulates a scenario in which a mouse, pois

54 Our simple and high throughput burrowing assay can provide insight into molecular mecha

55 The burrowing assay methodology involves loading animals at

56 i, which is known to lay its egg clutches in burrows at volcanically heated nesting grounds.

57 Fostering did not alter the characteristic burrowing behavior of either species, suggesting that th

58 ary support the longstanding hypothesis that burrowing behavior promoted survival during the "impact

59 Here, we investigate how burrowing behavior, a key component of species' enduranc

60 otus is strikingly precocious with regard to burrowing behavior, but not other behaviors, compared to

61 Virtually all rodents display burrowing behavior, yet measurement of this behavior has

62 developmental timing and adult expression of burrowing behavior.

63 l based on simple assumptions about organism burrowing behavior.

64 ted in such natural sounds, with startle and burrowing behaviors.

65 and suppressed hypermobility and cooperative burrowing behaviors.

66 aged in multigenerational, group-nesting and burrowing behaviour, representing the first example of s

67 ons, both species recapitulate their natural burrowing behaviour.

68 helium may be of particular importance for a burrowing, benthic scavenger, such as hagfish, which are

69 amundi, abalone (three species), blue sprat, burrowing blackfish, gummy shark, oyster (four species),

70 In burrows built by first-generation backcross mice, entran

71 in northeastern Siberia from fossil squirrel burrows buried at a depth of 38 m in undisturbed and nev

72 get Sound and examined them for blisters and burrows caused by polychaete worms.

73 va's ability to participate in a cooperative burrowing cluster relies on direct visual input as well

74 Burrows (cm-scale) preserved in magadiite in the High Ma

75 ronmental conditions may have limited deeper burrowing, complex ecosystem engineering behaviors were

76 sibly incorporated, and the reuse of initial burrows could be monitored via X-ray computed tomography

77 nce of soil and grassy weeds had higher live burrow counts (4.2 and 13.7 burrows as compared to 1.47

78 Resident burrowing crabs (Carcinus maenas) promoted the burial, r

79 ol of ecosystem edge processes: densities of burrowing crabs and edge erosion have declined markedly

80 interaction between the keystone sea otter, burrowing crabs and marsh creeks, demonstrating the spat

81 for microplastics with enhanced burial from burrowing crabs under favourable flow conditions.

82 etion rates, granulometry, plant species and burrowing crabs were identified as the main factors in d

83 ed that sea otters suppress the abundance of burrowing crabs, a top-down effect that cascades to both

84 We separated the effects of burrow creation from kangaroo rat density and found that

85 -0.5 per mille), (b) silt-filled Planolites burrows (delta(34)S ~ +40 per mille; delta(56)Fe ~ +0.5

86 Most remembered the location of the open burrow, demonstrating learning in 1 day.

87 ne of New England salt marshes, Carcinus are burrow dependent, Carcinus reduce Sesarma functional den

88 h is consistent across populations, although burrow depth varies with soil composition.

89 reversed where above-ground predators drive burrowing detritivores to lower soil levels, strengtheni

90 ive indirect effects to plants, whereas (ii) burrowing detritivores will escape predation by retreati

91 of above-ground predacious beetles: (i) non-burrowing detritivores will suffer mortality due to pred

92 patches (wet soil), we hypothesized that (i) burrowing detritivores would undergo a vertical habitat

93 oxy for body size, significant reductions in burrow diameter suggest that their tracemakers were smal

94 Burrow diameters of the most abundant ichnofossils are 3

95 spected, including adaptations for swimming, burrowing, digging and even gliding, but such well-prese

96 strategies to locate spider eggs: Larvae may burrow directly through the silk of egg sacs they find,

97 Burrows discovered in outcrops of the High Magadi Beds (

98 We assessed the utility of larval burrowing dragonflies (Odonata: Anisoptera: Gomphidae) a

99 th observations that squirrels entered their burrows during the day to 'offload' heat.

100 tudied gene expression in a hypoxia-tolerant burrow-dwelling goby fish, Gillichthys mirabilis.

101 Recently we showed how burrowing dystrophic (dys-1) C. elegans recapitulate man

102 Squirrels also emerged from their burrows earlier and returned to them later over the meas

103 m previously published literature to analyze burrowing ecosystem engineering behaviors through the Pe

104 e how close a potential intruder is from its burrow entrance, even when the entrance in the sand is i

105 hich a mouse, poised at the threshold of its burrow, evaluates whether to exit the enclosure or to re

106 Specifically, we consider burrowing events to be stochastic but memoryless, leadin

107 -time mixing resulting from infrequent, deep burrowing events.

108 tion and progressive specialization toward a burrowing existence.

109 signs (that is, the presence of rodent runs, burrows, faecal material or gnawed material) as a proxy

110 ut competition by bioeroding sea urchins and burrowing fauna (polychaete worms, bivalve mollusks) inc

111 nt ecological groups of earthworms and their burrowing, feeding and casting activities under various

112 Saccoglossus kowalevskii) with the presumed burrowing, filter-feeding traits of vertebrate ancestors

113 the locomotion traits of prey species (e.g. burrowing/flying ability) may help explain their behavio

114 spersal limited and rely on their silk lined burrow for protection.

115 esized that Carcinus is dependent on Sesarma burrows for refuge from physical and biotic stress in th

116 cial cohesion, tolerance, and cooperation in burrowing, foraging, defense, and alloparental care for

117 We used the observed burrow formation statistics and organism density to para

118 t uses time-lapse imagery to directly relate burrow formation to resulting sediment mixing.

119 We paired white-light imaging of burrow formation with fluorescence imaging of tracer par

120 The length and number of burrows formed by chemosymbiotic thyasirids are related

121 e in bioturbation with the expansion of deep burrowing forms into offshore environments; and (iv) off

122 s characterized thus far, that of the ornate burrowing frog (Platyplectrum ornatum) from Australia, a

123 n the egg jelly coat from the South American burrowing frog, Lepidobatrachus laevis.

124 rma to aggregate in high-density grazing and burrowing fronts at the heads of tidal creeks (hereafter

125 - and use high-resolution reconstructions of burrow geometry to determine the extent and nature of bi

126 d-and provide guidance on-the application of burrowing gomphids as biosentinels of MeHg contamination

127 The mean concentration of MeHg in burrowing gomphids was positively correlated with mean M

128 Ten species of burrowing gomphids were sampled; 13 lakes contained 3 or

129 earthworms that typically live in the soil, burrowing horizontally to acquire nutrients) earthworm P

130 evidence of neurological specializations to burrowing identified within Ornithischia, and non-avian

131 tier bioirrigated three-dimensional network burrows implies that benthic biogeochemical cycling coul

132 Many mammals forage and burrow in dark constrained spaces.

133 ating behavior was recorded once outside the burrow in March, which provided evidence of the occurren

134 icted by male spiders that wander from their burrow in search of females during the mating season, wh

135 drive to leave the safety of the underground burrow in search of water.

136 msters, gerbils and Egyptian spiny mice also burrow in this apparatus, and with suitable size modific

137 th of these approaches: the genetic basis of burrowing in deer mice and transcriptomic analyses of di

138 is also associated with precocious onset of burrowing in juveniles, suggesting that the same genetic

139 ple protocol that can quantitatively measure burrowing in laboratory rodents, using a simple apparatu

140 ptations to a wide range of lifestyles, from burrowing in moles to flying in bats.

141 Peristalsis is found to be effective for burrowing in noncohesive sediments which fill in rapidly

142 resources and spend extended periods of time burrowing in soil.

143 bivalve family Teredinidae (shipworms) that burrows in marine sediments rather than wood.

144 eason being that some members occupy shallow burrows in sediments and are maximally exposed to the co

145 d their feet to form elongated and ramifying burrows in the sediment, most probably to gain access to

146 ortugal, (iii) breeding birds attending nest burrows in the UK, captured by hand, and (iv) adults cap

147 Insect and oligochaete burrows increase in abundance during the PETM, suggestin

148 seeds themselves; after hatching, the larvae burrow into and develop inside the seed, complicating de

149 Morph1 (JN626268) was observed to burrow into and underneath the coral tissues at the lesi

150 These worms burrow into bivalve shells, creating unsightly mud blist

151 is caused by mites (Sarcoptes scabiei) that burrow into the epidermis.

152 s that can disperse over large distances and burrow into the ground.

153 been kept for several weeks, after they had burrowed into the agar.

154 Our experiments show that by burrowing into the sediment, Chaoborus spp. utilize the

155 The nematode worm burrows into insect prey and regurgitates Photorhabdus,

156 background levels and that the community of burrowing invertebrates has largely recovered.

157 Given that burrowing is 360-3,400 times more energetically costly t

158 ferential enrichment of (56)Fe in Planolites burrows is best explained via microbially-driven liberat

159 use the ability of detritivores to form deep burrows is likely to be limited by oxygen availability i

160 Macaronichnus, a subhorizontal cylindrical burrow, is characterized by a well-defined and developed

161 s, to account for the space occupied by crab burrows, it is key to avoid overestimates.

162 h long entrance and escape tunnels, and that burrow length is consistent across populations, although

163 ale kin ground squirrels maintain close nest burrows, likely providing a social buffer against territ

164 Burrowing lineages are disproportionately species-rich a

165 habits, suggesting that snakes evolved from burrowing lizards.

166 raging excursions, fiddler crabs track their burrow location despite having no visual contact with it

167 rena; after a 24-hr delay, their memory of a burrow location was tested.

168 Through a process called "bioturbation," burrowing macrofauna have altered the seafloor habitat a

169 he simplicity, sensitivity and robustness of burrowing make it ideal for assessing genetically modifi

170 ions reduces thermoregulatory costs in small burrowing mammals like mice.

171 In order to survive, small burrowing mammals need to remember the locations of esca

172 ment contamination and PCB exposure for this burrowing marsh crab through non-trophic mechanisms.

173 Until now, the analysis of burrowing mechanics has neglected the mechanical propert

174 netic orientation to simplify their vertical burrowing migration by reducing the orientation task fro

175 o the earth's magnetic field during vertical burrowing migrations.

176 Burrowing nematodes (Radopholus similis) cause severe ha

177 face-dwelling Nassarius nitidus and the deep-burrowing Nereis spp., decreased with increased cap thic

178 analyses, whereas hibernation, heterothermy, burrowing, nesting, and study location did not influence

179 rised by biogeochemical analysis, around the burrow of a herbivorous crab.

180 ecture is in contrast with the small, simple burrows of its sister species, deer mice (P. maniculatus

181 ween the two species reveal that the derived burrows of oldfield mice are dominant and evolved throug

182 ous and primarily inhabits nest cavities and burrows of small rodents and birds, with chipmunks and t

183 are biological and can be interpreted as the burrows of wormlike undermat miners (that is, infaunal a

184 pruritic papules, plaques, and pathognomonic burrows on finger/toe web spaces, volar wrists, ankles,

185 sis of reservoir quality given the impact of burrows on porosity and permeability.

186 ive over 6 months of the year in underground burrows or laboratory hibernaculum without access to foo

187 lying that oxygen levels were sufficient for burrowing organisms to live.

188 h additional ichnological properties such as burrow orientation and branching.

189 nd the differentiation of intervals based on burrow orientation.

190 Worms burrowed over a range of times and depths, resulting in

191 increasing air temperature and aridity on a Burrowing Owl (Athene cunicularia) population in the sou

192 The remarkable similarity between the burrowing owl's defensive hiss and the rattlesnake's rat

193 e widespread collection of mammalian dung by burrowing owls (Athene cunicularia) and show that they u

194 danger posed by the rattling snake, and (b) burrowing owls (Athene cunicularia) defend themselves ag

195 nd 13.7 burrows as compared to 1.47 and 7.53 burrows per 62.5 m(2) during 2019-2020 and 2020-2021, re

196 le is directly linked to foraging for small, burrowed prey (monitor lizards), which is a specialty of

197 The burrows, probably produced by beetles, show that trace f

198 ptation, suggesting that snakes evolved from burrowing rather than marine ancestors.

199 nd spent less time in the safe vicinity of a burrow refuge, thus suffering a potentially increased pr

200 topuses learned the original location of the burrow, remembering it for a week.

201 0004-3.2, p = 0.048), the presence of rodent burrows (RR = 2.3 [1.6-3.23, p = 0.000003), and being in

202 --in which an alternating 'anchor' system of burrowing serves as a wedge to extend the crack-shaped b

203 rable to that of the abundant birds, fishes, burrowing shrimps and polychaetes.

204 As burrow size is a proxy for body size, significant reduct

205 microbiome, distinct from the microbiome of burrow soil inhabited by the nymphs.

206 us beetle (i) reduced the density of the non-burrowing species and indirectly reduced dung loss rate,

207 Moreover, the lower extinction rate of burrowing species and peak diversification at the Cretac

208 steeply increase with climate seasonality in burrowing species as opposed to non-burrowing species.

209 ations and plant biomass, but (ii) drove the burrowing species deeper, indirectly improved soil condi

210 o climatic factors between burrowing and non-burrowing species.

211 ality in burrowing species as opposed to non-burrowing species.

212 the sediment medium is observed to boost the burrowing speed of the worm compared to swimming in wate

213 nments of different light intensities (i.e., burrows, streams, standing waters, and subterranean wate

214 es a clear zonation in porosity according to burrow structure, with the lowest porosity in the tube c

215 These burrows suggest that triploblastic animals existed more

216 mined the brains of rats housed in a visible burrow system (VBS), a seminaturalistic environment with

217 among the animals that had no access to the burrow system after the dominance hierarchy stabilized,

218 In two separate visible burrow system experiments, the nonresponsive subordinate

219 In the visible burrow system model of chronic social stress, male rats

220 latency to burrow and the complexity of the burrow systems in substrate-filled boxes in the laborato

221 s that spend their whole life in underground burrow systems.

222 new assay format for engaging C. elegans in burrowing that enables rapid assessment of nematode neur

223 as extended families in complex underground burrows that are adjacent to other families, these resul

224 As gravid females burrow, their eggs may bioaccumulate PAHs from contamina

225 llen tube must breach the stigma surface and burrow through the extracellular matrix of the stigma ep

226 Burrowing through the dermis filariae exclusively enter

227 is, of course, one of the great benefits of burrowing through the earth where few predators can foll

228 uggest that the N-terminal domain of the OCP burrows tightly into the PBS while leaving the OCP C-ter

229 urban run-off exhibited significantly longer burrowing times, >30% weight loss, and >2-fold increase

230 quently moved the offspring from one nursing burrow to another staying various durations ranging from

231 s frequently experienced when entering their burrow to escape predators.

232 a diversity of structures, from underground burrows to constructed nests to towering above-ground ed

233 ionally preserved ichnofossils including two burrow/trail morphotypes and microcoprolites that are at

234 During the forward motion, bacteria burrowed tunnels that last for several seconds and enabl

235 of age, whereas P. maniculatus did not build burrows until 10 days later.

236 o determine the relationship between BMR and burrow use in mammals.

237 , affect invertebrate particle reworking and burrow ventilation behaviour - important moderators of m

238 s reveal that dissolved O(2) introduction by burrow ventilation is the major driver of archaeal commu

239 y of marine bivalve genera by life position (burrowing versus exposed), body size, bathymetric positi

240 but memoryless, leading to exponential inter-burrow waiting times and depths.

241 In P. polionotus, burrows were excavated as early as 17 days of age, where

242 The burrows were formed when the lake floor became fresher a

243 n 35 days, and almost all (= 15/16) of these burrows were located in the core (MCP75) of LF28's home

244 adult males constantly visiting the nursing burrows were recorded.

245 NINJA takes advantage of the Burrows-Wheeler (BW) alignment using an artificial refer

246 In the pipeline, Burrows-Wheeler Aligner and Assembly Based ReAlignment a

247 As a result, alignment software such as the Burrows-Wheeler Aligner is optimized for speed and is of

248 present PALADIN-a novel modification of the Burrows-Wheeler Aligner that provides accurate alignment

249 We designed and implemented a new algorithm, Burrows-Wheeler Aligner's Smith-Waterman Alignment (BWA-

250 ed for each atrial-lymphocyte pair using the Burrows-Wheeler Aligner, the Genome Analysis Toolkit, an

251 Wheeler Transform - Smith-Waterman (BWT-SW), Burrows-Wheeler Alignerr - Smith-Waterman (BWA-SW)) base

252 We implemented Burrows-Wheeler Alignment tool (BWA), a new read alignme

253 In recent years, the Burrows-Wheeler transform (BWT) and FM-index have been w

254 system uses an indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzin

255 r error model for the raw intensity data and Burrows-Wheeler transform (BWT) based alignment are comb

256 It uses a Burrows-Wheeler Transform (BWT) index of the sequencing

257 Burrows-Wheeler Transform (BWT) is a common component in

258 The Burrows-Wheeler transform (BWT) is the foundation of man

259 ackage that is based on backward search with Burrows-Wheeler Transform (BWT), to efficiently align sh

260 st stage is split reads mapping based on the Burrows-Wheeler transform (BWT), which finds candidate d

261 compressed via a multi-string variant of the Burrows-Wheeler Transform (BWT), which provides the side

262 ce a multi-allelic version of the Positional Burrows-Wheeler Transform (mPBWT) based on the bi-alleli

263 stRecomb, leverages the efficient positional Burrows-Wheeler transform (PBWT) data structure for coun

264 The celebrated Positional Burrows-Wheeler Transform (PBWT) data structure is a pre

265 Durbin's positional Burrows-Wheeler transform (PBWT) is a scalable data stru

266 Positional Burrows-Wheeler Transform (PBWT) provides an appropriate

267 ays is given, which is termed the positional Burrows-Wheeler transform (PBWT).

268 andful of hash table (BLAT, SSAHA2) or trie (Burrows-Wheeler Transform - Smith-Waterman (BWT-SW), Bur

269 of mismatches than current programs based on Burrows-Wheeler transform and finds about the same numbe

270 n, we replaced the original suffix tree with Burrows-Wheeler Transform and introduced the wavefront a

271 HISAT uses an indexing scheme based on the Burrows-Wheeler transform and the Ferragina-Manzini (FM)

272 CIndex uses the Burrows-Wheeler transform and the wavelet tree, combined

273 rs, methods based on suffix arrays using the Burrows-Wheeler Transform have been widely used for DNA

274 Burrows-Wheeler transform is used in multiple steps of t

275 We create a Burrows-Wheeler transform of the genome, which together

276 esign a new alignment algorithm based on the Burrows-Wheeler transform that maps short reads from a n

277 na-Manzini index (FM-index) derived from the Burrows-Wheeler transform to find overlaps of length at

278 efficient string data structures such as the Burrows-Wheeler transform with cryptographic techniques

279 q) to a reference genome using the FM-index (Burrows-Wheeler transform).

280 to achieving this runtime is the use of the Burrows-Wheeler transform, allowing the algorithm to eff

281 ing the FM-index derived from the compressed Burrows-Wheeler transform, and a new assembler based on

282 e number of maximal equal-letter runs in the Burrows-Wheeler transform, and d is the number of distin

283 esentation of haplotype data, the positional Burrows-Wheeler transform, and multi-threaded execution

284 try harnessing the strengths of a Positional Burrows-Wheeler Transform.

285 -space, where r is the number of runs in the Burrows-Wheeler transform.

286 lar to, and generalizes, Durbin's positional Burrows-Wheeler transform.

287 ion of the graph extension of the positional Burrows-Wheeler transform.

288 e collections and employing the (positional) Burrows-Wheeler transform.

289 a new data structure based on the positional Burrows-Wheeler transform.

290 GRASP2 utilizes Burrows-Wheeler Transformation (BWT) and FM-index to per

291 In Centrifuger, the Burrows-Wheeler transformed genome sequences are lossles

292 (Spermophilus columbianus) to locate escape burrows when local (e.g., vegetation pattern, local reli

293 r polarization information to avoid occupied burrows when seeking a refuge.

294 ed for tactile exploration in the dark tight burrows where many rodents live.

295 e species-P. polionotus adults excavate long burrows with an escape tunnel, whereas P. maniculatus di

296 d mice (Peromyscus polionotus) build complex burrows with long entrance and escape tunnels, and that

297 major food sources is larvae extracted from burrows with sticks held diagonally in the bill, oriente

298 s resides in intimate contact with its host, burrowing within cecal epithelial cells.

299 e allows for the first time the isolation of burrows within these kinds of sediments and the differen

300 ere heavier when they emerged from the birth burrow yet this rapid growth was not associated with sho