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1 cccDNA is assembled with cellular histone proteins into
2 cccDNA is maintained in the nucleus of the infected hepa
3 cccDNA transcription is reduced in HIV/HBV coinfected pe
4 he nuclei assayed contained between 1 and 17 cccDNA molecules, with the remaining 10% containing more
5 ssing the virus are known, information about cccDNA formation, stability, and turnover is lacking.
9 relationship between the UV-DDB complex and cccDNA formation, providing a proof of concept for a mor
10 he relationship between hepatocyte death and cccDNA elimination requires knowing both the amount of h
11 cular mechanisms of rcDNA deproteination and cccDNA biogenesis.IMPORTANCE The covalently closed circu
15 c cccDNA but not between HBeAg or HBcrAg and cccDNA in HBV-infected chimpanzees, suggesting that HBc
18 3.5 kB HBV RNA (preC/pgRNA) and by assessing cccDNA-associated histone tails post-transcriptional mod
19 d the decline in cccDNA, so that the average cccDNA copy number in infected cells dropped during the
23 , and the reduction rate was similar between cccDNAs in transcriptionally active and transcriptionall
24 DNA by Cas9 and a dramatic reduction in both cccDNA and other parameters of viral gene expression and
25 ear episomal form of the viral genome called cccDNA, the most stable HBV replication intermediate.
26 motes gene expression from the chromatinized cccDNA, accompanied by an epigenetic switch from an H3K9
27 of intrahepatic covalently closed circular (cccDNA), which is an important target for pegylated inte
28 To fill the gaps in knowledge concerning cccDNA biology, we have developed a fluorescence imaging
32 ded the first insights into the fate of DHBV cccDNA and nuclear HBV DNA under conditions mimicking an
33 e detection of duck hepatitis B virus (DHBV) cccDNA and HBV nuclear DNA in established cell lines.
34 -polymerase inhibitor aphidicolin diminishes cccDNA formation both in biochemical assays and in HBV-i
36 strated that these inhibitors also disrupted cccDNA synthesis during de novo HBV infection of HepG2 c
38 s, including covalently closed circular DNA (cccDNA) and Dane particles, were detected only after ind
39 ids produced covalently closed circular DNA (cccDNA) and HBV early antigen (HBeAg), expressed intrace
40 an episomal covalently-closed-circular DNA (cccDNA) and integrated viral DNA fragments are linked to
41 (HBsAg) from covalently closed circular DNA (cccDNA) and the integrated genome, is believed to contri
42 e same time, covalently closed circular DNA (cccDNA) and viral mRNA levels both declined about two- t
44 fect initial covalently closed circular DNA (cccDNA) conversion but inhibits the synthesis of progeny
45 f the stable covalently closed circular DNA (cccDNA) form of the viral genome, which is formed by the
54 erted into a covalently closed circular DNA (cccDNA) in the nucleus of the infected hepatocyte by cel
56 virus (HBV) covalently closed circular DNA (cccDNA) is an episomal minichromosome whose persistence
57 PORTANCE The covalently closed circular DNA (cccDNA) is the persistent form of the hepatitis B virus
58 from the HBV covalently closed circular DNA (cccDNA) minichromosome, both in cultured cells in which
59 a long-lived covalently closed circular DNA (cccDNA) molecule, is degraded noncytolytically by agents
60 V) contained covalently closed circular DNA (cccDNA) molecules with deletions and insertions indicati
64 virus (HBV) covalently closed circular DNA (cccDNA) requires the removal of the covalently linked vi
65 ool of viral covalently closed circular DNA (cccDNA) transcriptional template of HBV, which must be e
66 ated DNA and covalently closed circular DNA (cccDNA) were turned over independently of cell division.
67 virus (HBV), covalently closed circular DNA (cccDNA), has been difficult to study in patients with ch
68 rsistence of covalently closed circular DNA (cccDNA), HBV-DNA integration into the host genome, and i
71 omosome, the covalently closed circular DNA (cccDNA), in the nucleus of infected hepatocytes, as well
73 ool of viral covalently closed circular DNA (cccDNA), resulting in a transient elevation of viral rep
74 ctly affect nuclear HBV closed circular DNA (cccDNA), the genomic form that templates viral transcrip
75 formation of covalently closed circular DNA (cccDNA), the molecular basis for establishing and sustai
78 silencing of covalently closed circular DNA (cccDNA), to characterize this dissociation, and virologi
79 te the viral covalently closed circular DNA (cccDNA), which is a stable episomal form of the viral ge
91 transcriptase activity but fail to eliminate cccDNA, which would be required to cure HBV infection.
92 proposed as surrogate markers for evaluating cccDNA activity, they do not necessarily estimate the am
94 The development of a FISH-based assay for cccDNA tracking provided the first insights into the fat
95 d samples was associated with enrichment for cccDNA histone PTMs related to repressed transcription.
96 of lagging-strand synthesis as essential for cccDNA formation: proliferating cell nuclear antigen, th
100 Each nucleus was assayed by nested PCR for cccDNA and for cellular IFN-alpha genes as an internal c
101 ntification of key host factors required for cccDNA metabolism and function will reveal molecular tar
102 circular-DNA substrates are repaired to form cccDNA by both cell extracts and purified human proteins
103 cer and the amount of pgRNA transcribed from cccDNA) were significantly higher in cells expressing wi
104 ISGs) on hepadnaviral mRNAs transcribed from cccDNA, we found that downregulating the expression of S
105 acterize residual HBV-RNA transcription from cccDNA and assist drug development and disease managemen
106 acterize residual HBV RNA transcription from cccDNA, and assist new drug development and disease mana
108 d to non-HBV minicircle plasmids, mcHBV-GLuc cccDNA showed persistent HBV-GLuc activity and HBx-depen
111 th a Gaussia Luciferase reporter (mcHBV-GLuc cccDNA), which serves as a surrogate to measure cccDNA a
115 cteria, and it formed minichromosomes as HBV cccDNA episome DNA does when it was transfected into hum
116 and nucleic acids and a mismatch between HBV cccDNA, RNA, and expression of the hepatitis B surface a
117 B virus covalently closed circular DNA (HBV cccDNA), the episomal form of the virus that persists de
121 V entry inhibitors, HBV core inhibitors, HBV cccDNA transcripts RNA interference, HBV cell apoptosis
122 mechanisms, we quantitated intrahepatic HBV cccDNA levels in acutely infected chimpanzees whose viro
123 , and will be valuable for investigating HBV cccDNA biology and for developing cccDNA-targeting drugs
126 HBVcircle models, the reduction rate of HBV cccDNA and the efficacy of apolipoprotein B mRNA editing
127 a, produced by T cells, reduce levels of HBV cccDNA in hepatocytes by inducing deamination and subseq
128 n about the intrahepatic distribution of HBV cccDNA in infected patients, particularly at the single-
129 nistic understanding of the stability of HBV cccDNA in the presence of antiviral therapy and during c
131 I and II may catalyze distinct steps of HBV cccDNA synthesis and that pharmacologic targeting of the
132 -alpha mediates epigenetic repression of HBV cccDNA transcriptional activity, which may assist in the
134 to treat HBV do not directly target the HBV cccDNA genome and thus cannot eradicate HBV infection.
135 cal host-protein interaction site in the HBV cccDNA genome may facilitate the development of novel an
136 ent, indicating its unique similarity to HBV cccDNA that is usually resistant to long-term IFN treatm
138 55-60 and 121-126 had a lower degree of HBx-cccDNA association than wild type HBx (mean % input: 0.0
140 pressive effect of IFN-alpha on hepadnaviral cccDNA transcription.IMPORTANCE Pegylated IFN-alpha is t
142 s revealed differential promoter activity in cccDNA and integrants, with implications for the efficac
143 ted hepatocytes lagged behind the decline in cccDNA, so that the average cccDNA copy number in infect
145 ith M and/or S proteins led to a decrease in cccDNA levels, indicating that L contributes to the regu
147 and minimal set of host factors involved in cccDNA formation is unknown, largely due to the lack of
149 ledge, the first genome-wide maps of PTMs in cccDNA-containing chromatin from de novo infected HepG2
150 gate the role of the cytoplasmic DP rcDNA in cccDNA formation, we demonstrated that rcDNA deproteiniz
151 Administration of IFN-alpha resulted in cccDNA-bound histone hypoacetylation as well as active r
152 t with TPD2's having a physiological role in cccDNA formation, RNAi-mediated TDP2 depletion in human
154 for detecting viral nucleic acids, including cccDNA, with single-cell resolution provides a means for
157 A formation, and conversion of DP-rcDNA into cccDNA is a rate-limiting step of cccDNA formation in He
158 ation was found between HBc and intrahepatic cccDNA but not between HBeAg or HBcrAg and cccDNA in HBV
159 the increase of HBV viremia and intrahepatic cccDNA loads was significantly slower than in HBV mono-i
162 cted the amount and dynamics of intrahepatic cccDNA within a certain range using specific viral marke
163 were used to quantify residual intrahepatic cccDNA in liver biopsies from 56 chronically HBV infecte
164 The assessment of residual intrahepatic cccDNA levels and activity after long-term nucleos(t)ide
167 d CRISPR/CRISPR-associated 9 (Cas9)-mediated cccDNA targeting were compared between cccDNAs with dist
173 K7A and K7R mutations did not affect de novo cccDNA formation and RNA transcription during infection,
176 up to 36 days with 3TC reduced the amount of cccDNA in the cultures not more than twofold compared to
182 argely derived from quantitative analyses of cccDNA levels present in liver samples, and little was k
183 hosen guide RNAs, we demonstrate cleavage of cccDNA by Cas9 and a dramatic reduction in both cccDNA a
184 e infecting virion, but additional copies of cccDNA are derived from newly synthesized RC DNA molecul
186 ma and TNF-alpha each induced deamination of cccDNA and interfered with its stability; their effects
189 sing FISH, we determined the distribution of cccDNA under conditions mimicking chronic infections wit
197 t with the possibility that some fraction of cccDNA was distributed to daughter cells in those infect
199 ing of antiviral target and investigation of cccDNA biosynthesis and transcription using secreted HBs
201 kemia (PML) protein increased basal level of cccDNA transcription activity and partially attenuated I
202 ion led to a decrease (>50%) in the level of cccDNA, which inversely correlated with the level of the
205 ation, the cells accumulate higher levels of cccDNA as well as larger amounts of deproteinized rcDNA
208 ring antiviral therapy, the rates of loss of cccDNA, infected hepatocytes (1 or more molecules of ccc
210 tial for the biosynthesis and maintenance of cccDNA and reveal that cellular DNA topoisomerases are r
212 ce suggests that epigenetic modifications of cccDNA contribute to viral replication and the outcome o
213 nduce the posttranslational modifications of cccDNA-associated histones similar to those induced by I
215 infected hepatocytes (1 or more molecules of cccDNA), and replicating DNAs may be quite different.
216 tudies have measured the mean copy number of cccDNA molecules in hepadnaviral-infected cells, the dis
217 a PCR-based assay, we examined the number of cccDNA molecules of the duck hepatitis B virus in single
218 all, the data suggest (i) that the number of cccDNA molecules per cell may fluctuate over time, and (
223 n, which is associated with the reduction of cccDNA-associated histone modifications specifying activ
225 ssibility that chromatin-based regulation of cccDNA transcription could be a new therapeutic approach
228 RNA and HBcrAg as surrogates of silencing of cccDNA, to characterise this dissociation, and virologic
230 lar proteins that mediate the suppression of cccDNA transcription by the cytokine, we found that down
232 y, GLuc illuminates cccDNA as a surrogate of cccDNA activity, providing a very sensitive and quick me
235 espite this multipronged response, traces of cccDNA persist indefinitely in the liver, likely providi
236 ive biomarkers of continued transcription of cccDNA in HBeAg-negative patients despite marked HBV DNA
237 ive biomarkers of continued transcription of cccDNA in HBeAg-negative patients despite marked HBV-DNA
239 cular inhibitors of DNA metabolic enzymes on cccDNA synthesis but avoids cytotoxic effects upon long-
241 HBV replication with little or no impact on cccDNA, hence lifelong treatment is required in the vast
247 exposure to >7 years exposure), quantifying cccDNA and pregenomic RNA (pgRNA) in each cell using dro
248 ased assay supporting synchronized and rapid cccDNA synthesis from intracellular progeny nucleocapsid
249 models and in vitro and in vivo recombinant cccDNA (rcccDNA) and HBVcircle models, the reduction rat
252 alpha, inhibited HBV replication and reduced cccDNA in infected cells without the direct contact requ
256 at HBV envelope proteins negatively regulate cccDNA formation, and conversion of DP-rcDNA into cccDNA
257 rs, inhibitors of subviral particle release, cccDNA silencers, and RNA interference molecules have re
264 lpha-induced cellular proteins that suppress cccDNA transcription and may partly mediate IFN-alpha si
265 he development of drugs that directly target cccDNA is hampered by the lack of robust HBV cccDNA mode
267 at replicative DNA levels declined more than cccDNA and mRNA levels following adenovirus infection su
269 se observations, our study demonstrated that cccDNA was undetectable in a portion of HBV-infected cel
271 Collectively, these results suggest that cccDNA clearance is a two-step process mediated by the c
272 Finally, we showed for the first time that cccDNA undergoes phase separation in a G4-dependent mann
275 nstrate that the elimination kinetics of the cccDNA are more rapid than the elimination of HBV antige
282 ications (PTMs) of histone proteins bound to cccDNA through analysis of de novo HBV-infected cell lin
285 hat those cellular proteins are recruited to cccDNA minichromosomes and induce the posttranslational
286 hat STAT1, SMCHD1, and PML were recruited to cccDNA minichromosomes and phenocopied the IFN-alpha-ind
287 st, enhanced expression of S RNA relative to cccDNA and core RNA in patients with medium-high or low
288 plication, antigen expression, and, in turn, cccDNA activity, providing a potential path to a functio
289 spite 38 out of 56 patients had undetectable cccDNA when assessed by qPCR, RCA and ddPCR assays detec
291 hat maintenance of wild-type levels of viral cccDNA promotes persistence of virus infection by establ
295 pression of human and duck hepatitis B virus cccDNA transcription, which is associated with the reduc
296 ultiple enzymes which target different vital cccDNA regions, or sequential delivery of different enzy
297 life cycle, little is understood about where cccDNA molecules localize, why they are so stable, and h
298 he amount of hepatocyte turnover and whether cccDNA synthesis is effectively blocked during the perio
300 gulation, via their impeded interaction with cccDNA and altered recruitment of histone modifying enzy