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1 enza B virus (IBV) HA possessing a monobasic cleavage site.
2 quences homologous to the targeted gRNA/Cas9 cleavage site.
3 ions (indels) or other rearrangements at the cleavage site.
4 es a pri-miRNA and accurately identifies the cleavage site.
5 ophin release and determined the exact BMP-1 cleavage site.
6 resistance to BVM cluster around the CA-SP1 cleavage site.
7 rotein (gp)41 elements proximal to the furin cleavage site.
8 r-219, 50 amino acids downstream of the BMP1 cleavage site.
9 t overlap or are immediately upstream of the cleavage site.
10 e site, thereby having minimal impact on the cleavage site.
11 catalysis and allow hydrolases to access the cleavage site.
12 e G40 and adenosine A32 close to the G53-U54 cleavage site.
13 leavage peptide and blue light to uncage the cleavage site.
14 nt of the guide or target strands and at the cleavage site.
15 r a modified amide bond at the main protease cleavage site.
16 d inhibitory peptides derived from a cohesin cleavage site.
17 ine teschovirus 1 (PTV-1) 2A autoproteolytic cleavage site.
18 d PAR1 signaling independent of the protease cleavage site.
19 ase in readout of information content at the cleavage site.
20 tation (App(s)), also located near the BACE1-cleavage site.
21 ognizes HS substrate and selects a favorable cleavage site.
22 ucture of S2 proximal to the secondary (S2') cleavage site.
23 the S1/S2 boundary resulting in a furin-like cleavage site.
24 only used to create a single DSB at a unique cleavage site.
25 NH nuclease domain positioning away from the cleavage site.
26 nal changes in VWF that reveal the A2 domain cleavage site.
27 on of protease-specific substrates and their cleavage sites.
28 its precision and wide coverage of different cleavage sites.
29 fferent predictors for the identification of cleavage sites.
30 ursor localize in close proximity to the SSU cleavage sites.
31 h the protease, 32 of which were outside Gag cleavage sites.
32 cleavage is regulated by acetylation of the cleavage sites.
33 dictions of other, distinct target substrate-cleavage sites.
34 tion by trypsin/chymotrypsin by exposing new cleavage sites.
35 es, revealing the hydrophobic nature of Tiki cleavage sites.
36 genes, and binds RNA motifs downstream from cleavage sites.
37 cilitating access of the protease to the Gag cleavage sites.
38 d PAR1 signaling independent of the protease cleavage sites.
39 caspase and matrix metalloprotease substrate-cleavage sites.
40 f the prodomain distant from the proteolytic cleavage sites.
41 genic ancestors via acquisition of polybasic cleavage sites.
42 se proximity to each other and autocatalytic cleavage sites.
43 on of protease-specific substrates and their cleavage sites.
44 etrate regions with a low density of trypsin-cleavage sites.
45 redictor of protease-specific substrates and cleavage sites.
46 ult in the deletion of sequences between the cleavage sites.
47 formed other predictors for calpain-specific cleavage sites.
48 long the translocation coordinate toward the cleavage site, a 4-nucleotide RNA experiences a free ene
49 ncluded the presence of a signal peptidase I cleavage site, a predicted beta-barrel fold, and cross-p
50 te-directed (Arg-to-Ala) mutagenesis of this cleavage site abolished matriptase-mediated APP processi
51 t that SARS-CoV-2 has evolved a unique S1/S2 cleavage site, absent in any previous coronavirus sequen
54 the junction of the signal peptidase (Spase) cleavage site along with a well conserved lipobox motif.
55 The smaller conformer of melittin has fewer cleavage sites along the peptide backbone than the large
57 express a TEVp (tobacco etch virus protease) cleavage site and a SpyTag (st) between cMyBP-C domains
58 of the SARS-CoV-2 S glycoprotein, the furin cleavage site and D614G, have evolved to balance virus i
59 the Scc1 substrate that is distinct from the cleavage site and is required for rapid and specific sub
60 protease, activates PAR1 through a distinct cleavage site and promotes anti-inflammatory responses,
61 the spike glycoprotein, including the furin cleavage site and the D614G natural mutation, that modul
62 tracellular site different from the thrombin-cleavage site and thus initiates biased receptor signali
64 orly understood; MMPs have limited access to cleavage sites and are inhibited by tension on the fibri
65 t methods for quantifying on- and off-target cleavage sites and associated deletions remain nascent.
67 e genomes, enriched with eukaryotic protease cleavage sites and combined with additional domains to f
68 ied the exact MMP14-mediated Tie2 ectodomain cleavage sites and could show that pharmacological MMP14
69 ytical methods are required to identify main cleavage sites and degradation products of GalNAc conjug
71 e to a database of experimentally determined cleavage sites and experimentally validated for four epi
72 d peptide substrates on the basis of protein cleavage sites and found similar catalytic efficiencies
75 aling from PARs is influenced by alternative cleavage sites and the physical interactions within the
76 cription factor, a LOV domain-caged protease cleavage site, and a calcium-activated TEV protease that
77 influenza viruses is cleaved at a monobasic cleavage site, and a number of proteases have been shown
78 eam and 7 or 8 bp of dsRNA downstream of the cleavage site, and bacterial EndoV binds only 2 or 3 nt
79 region, the loops contiguous to the protease cleavage sites, and the latency-associated structural el
81 on of protease-specific substrates and their cleavage sites, and will facilitate hypothesis-driven fu
83 ditional experiments reveal that 85% of Cas9 cleavage sites are also found by other in vitro-based me
86 cleavage sites Leu-81 and Leu-148, autolytic cleavage site Arg-122, and restoration of the missing di
88 n, which inserts the segment upstream of the cleavage site as an extra beta-strand in a central beta-
89 Serial truncation mapping identified the cleavage site as Leu(90)/Val(91) in the 95-amino acid AD
90 g a different insertion at the hemagglutinin cleavage site, as well as nine nucleotide differences at
91 express RIPK1(D325A), in which the caspase-8 cleavage site Asp325 had been mutated, died mid-gestatio
92 d to define transcription initiation and RNA cleavage sites associated with all polyadenylated viral
93 ndeed, computational prediction of substrate-cleavage sites associated with MMPs is a challenging pro
94 ediated degradation was due to an additional cleavage site at Leu-148 in the autolysis loop and the l
95 he SARS-CoV-2 S glycoprotein harbors a furin cleavage site at the boundary between the S(1)/S(2) subu
97 haFXIIa (FXII-R353A), or lacking the 3 known cleavage sites at Arg334, Arg343, and Arg353 (FXII-T, fo
99 oughput sequencing technology to define TOP2 cleavage sites at single-base precision, and use the tec
100 582-nucleotide insertion, flanked by 3C(pro) cleavage sites at the 5' and 3' ends, was found in the 2
101 ed to contain conserved thrombin-susceptible cleavage sites based on sequence analysis, and heavy cha
102 rate prior to T1 closure such that the U5-A6 cleavage site becomes embraced to achieve its cleavage c
104 introduced a previously developed enzymatic-cleavage site between helices E and F and pulled from th
105 ave an Arg residue at the P4 position of the cleavage site between the nonstructural protein P1 (nsP1
106 centrin deficiency or mutation of a separase cleavage site blocked DNA damage-induced PCM expansion.
109 hat cells clear trailing chromatids from the cleavage site by undergoing two phases of cell elongatio
111 e findings suggest that RNase E searches for cleavage sites by scanning linearly from the 5'-terminal
112 enzyme has generally been thought to locate cleavage sites by searching freely in three dimensions.
114 ures with Pb(2+) and the modification at the cleavage site captured the pre-catalytic state of the RN
116 f the typical six- to eight-residue protease cleavage sites compared to state-of-the-art synthetic pe
117 ospacer-adjacent motif (PAM) near the target cleavage site, constraining the sequences accessible for
118 n HIV-1 subtype-B, specific mutations in Gag cleavage sites (CS) are associated with treatment failur
119 ervations suggest that cleavage at the furin-cleavage site decreases the overall stability of SARS-Co
121 ts revealed that tandem stem-loops 3' to the cleavage site define optimal, correctly-positioned cleav
122 We find that the distance between two Top1 cleavage sites determines the deletion size and that thi
123 ble in the serum of mice, mutating the furin cleavage site did not alter the stimulation of hepcidin
125 this system to examine the role of a caspase cleavage site, DQVD, within the HAZV nucleocapsid protei
127 found that, besides the previously reported cleavage site E349 in NEMO, scission by PRRSV nsp4 took
129 tem to test the importance of a DQVD caspase cleavage site exposed on the apex of the HAZV nucleocaps
130 Two mutations, one in the fusion (F) protein cleavage site, F117S (F117S), and another in hemagglutin
131 phosphorylates MLL1 proximal to the taspase1 cleavage site, facilitating its cleavage, and pharmacolo
132 ur models stems from the use of high-quality cleavage site features extracted from the substrate sequ
136 age site within PBS1 can be substituted with cleavage sites for other pathogen proteases, which then
137 e site within PBS1 can be altered to contain cleavage sites for other proteases, enabling RPS5 activa
138 QGAP1 amino acid sequence revealed potential cleavage sites for proteases of the proprotein convertas
139 ght peptides encompassing predicted protease cleavage sites for Serp-1 and NSP were synthesized and t
140 uency analysis to discover the most frequent cleavage sites for similar amide bonds, defined based on
141 ide and residues downstream of the canonical cleavage site form an extended alpha-helix in the ER mem
142 overed that A673V mutation shifted the BACE1 cleavage site from the Glu(11) to the Asp(1) site, resul
143 ith sequences derived from putative ZMPSTE24 cleavage sites from amphibian, bird, and fish prelamin A
144 ) the presence or absence of endonucleolytic cleavage sites, (g) control of intracellular ribonucleas
145 ith single nucleotide resolution, DNA gyrase cleavage sites (GCSs) throughout the Escherichia coli ge
147 an "immature" Chikungunya virus in which the cleavage site has been mutated to inhibit proteolysis.
150 ck-in mice bearing a mutation of MET caspase cleavage site highlighted that p40MET production is impo
152 ated by sequence immediately upstream of the cleavage site, (ii) deletions are predominantly associat
154 ase domain adjacent to the target DNA strand cleavage site in a conformation essential for concerted
155 hat cells clear trailing chromatids from the cleavage site in a two-step cell elongation and demonstr
161 type and mutant SARS-CoV-2 lacking the furin cleavage site in S protein could utilize ACE2 from a bro
163 lts highlight the importance of this caspase cleavage site in the HAZV life cycle but reveal the DQVD
165 soschizomer I-BmoI which targets a different cleavage site in the thymidylate synthase gene, recapitu
167 ryotic and eukaryotic type II topoisomerases cleavage sites in a variety of organisms and paves the w
171 Site-directed mutagenesis of the phytaspase cleavage sites in prosystemin abrogated not only the phy
172 -RNA-seq) revealed ~25,000 RNase E-dependent cleavage sites in Vibrio cholerae, several of which resu
173 ation-free long-read sequencing reveals Cas9 cleavage sites in vitro that would have been difficult t
175 -terminal gasdermin D region adjacent to the cleavage site, influences gasdermin D recognition by cas
178 ither the mRNA polyadenylation signal and/or cleavage site is an efficient strategy to down-regulate
180 rhEPO is compromised, as no natural tryptic cleavage site is located between the glycosylation sites
183 This should help establish whether or not a cleavage site is physiologically relevant on the basis t
184 the domain immediately downstream of the S2' cleavage site is the FP (amino acids 798-818 SFIEDLLFNKV
185 suggest that host DSB repair at CRISPR/Cas9 cleavage sites is a novel and important pathway that may
186 2 that either directly affect the furin-like cleavage site itself (NSPRRAR) or a flanking sequence (Q
187 -2 that either directly affect the polybasic cleavage site itself (NSPRRAR) or a flanking sequence (Q
188 ructure of the BMV capsid shows four trypsin cleavage sites (K(65), R(103), K(111), and K(165) on the
189 , thermolysin/neutral protease share similar cleavage sites, L( downward arrow)G and P( downward arro
190 s achieved by simultaneous mutations of CTRC cleavage sites Leu-81 and Leu-148, autolytic cleavage si
191 trimental APP mutation at the beta-secretase cleavage site linked to early-onset AD found in a Swedis
192 ensor containing the flavivirus internal NS3 cleavage site linker reported the highest fluorescence a
193 followed by site-directed mutagenesis of the cleavage sites links receptor activation to specific ami
194 ism whereby protease recognizes distinct Gag cleavage sites, located in the intrinsically disordered
195 e PICS (proteomic identification of protease cleavage sites) method are similar for both KLK2 variant
196 guanosine residue 3-nucleotide downstream of cleavage site must not form canonical base pairing for t
197 duction in pericentrin-deficient or separase cleavage site mutant-expressing cells, and an increase i
198 pro-TGF-beta1 with the proprotein convertase cleavage site mutated to mimic the structure of the TGF-
199 ral pocket in proximity to the MMP-9 zymogen cleavage site near Arg-106, which is distinct from the c
200 mains including the lack/excess of enzymatic cleavage sites, nonunique peptide sequences, impaired pe
203 APP mutation, shifted the preferential beta-cleavage site of BACE1 in APP from the Glu(11) site to t
204 nto short CRISPR RNA guides that specify the cleavage site of Cas nucleases in the genome of the inva
205 a matrix metalloproteinase-2 and -9 specific cleavage site of COL6alpha3 (C6Malpha3) and employed in
207 2 (PPPY) as well as the late domain/protease cleavage site of matrix (LYPAL), by mass spectrometry an
208 esidue at position 8 (P8) of the proteolytic cleavage site of MuV F, because this amino acid residue
209 asic amino acids (KGKRTAR/G) at the protease cleavage site of the HA protein, which were previously f
211 SVAID contains the beta- and alpha-secretase cleavage sites of APP: proteomic analysis of the interac
212 ding was not observed at the initial epsilon-cleavage sites of C99, subtle changes in hinge flexibili
214 r outside the active site of protease or the cleavage sites of Gag (located within intrinsically diso
218 ecting degradation kinetics and preferential cleavage sites of the endolysosomal proteases cathepsin
219 that the mutant VWF gives access to multiple cleavage sites of the VWF multimer at the same time.
221 downward arrowSAGGSVA, downward arrow shows cleavage site), on phage or coated it onto silver nanopa
222 allowed us to identify 10(4) to 10(5) unique cleavage sites over a 1,000-fold dynamic range of NGS co
224 e activity for the preferred residues at the cleavage site (P1, P1') and nearest-neighbor positions (
226 ularly at the hemagglutinin (HA) proteolytic cleavage site (PCS) that can affect virus activation and
227 sequences surrounding the 12 viral protease cleavage sites (PCSs) provided greater than 80% protecti
229 otein sequences for the presence of protease cleavage sites, Pfam domains, glycosylation sites, signa
234 mputational approaches for protease-specific cleavage site prediction to further advance the existing
239 le the Icelandic APP mutation near the BACE1-cleavage site protects from sporadic dementia, emphasizi
240 , systematic bioinformatics studies of known cleavage sites provide important insights into caspase/g
241 bearing a mutation in the IL-1alpha thrombin cleavage site (R114Q) exhibited defects in efficient wou
242 ) precursor with alterations in the protease cleavage site (R508S/R511S) or by introducing a disulfid
243 structural homogeneity at the signal peptide cleavage site regardless of the native secretory route.
244 pared human FXII variants lacking the Arg353 cleavage site required for conversion to alphaFXIIa (FXI
248 type DNAJC14 affected the NS3/4A and NS4A/2K cleavage sites, resulting in altered NS3-to-NS3-4A ratio
249 lectrophoresis and LC-MS/MS to determine the cleavage site(s) and Asn(347) glycosylation as a functio
250 ed by the OMA1 or YME1L proteases, acting at cleavage sites S1 and S2, respectively, to produce short
251 P673 regulates APP processing, and the BACE1 cleavage site selection is critical for amyloidogenesis
252 PP673 regulates APP processing and the BACE1 cleavage site selection is critical for amyloidogenesis
255 nfolding of this domain, thereby leaving the cleavage site solvent-exposed and ready for cleavage.
257 s is difficult to reconcile with the relaxed cleavage site specificity of RNase E, the endonuclease m
259 e N-termini but strongly enriched at caspase cleavage sites, suggesting roles for the substrate adapt
260 nds are at or near preferred gamma-secretase cleavage sites, suggesting that the sequence of APP and
261 ts 3'-end processing of pre-miRNAs on Drosha cleavage site that correlates with miRNA-offset RNAs (mo
262 s of full-length decorin but also harbored a cleavage site that was not found in atrial appendages fr
265 in conformation and were associated with the cleavage sites that generate the 50 kb DNA fragments dur
266 ntigenic fragments in CD4 T cells identified cleavage sites that were predictably enhanced, reduced,
267 o acid precursor protein containing multiple cleavage sites that, when cleaved, releases multiple bio
268 alpha2delta constructs containing artificial cleavage sites, that this processing is an essential ste
269 by an increased availability of the ADAMTS13 cleavage site through A2-domain-fold thermodynamic desta
271 has a modification at the fusion protein (F) cleavage site to reduce the efficiency of F protein clea
273 ural explanation of accessibility of the RNA cleavage sites to the peptide with adoption of an 'in-li
274 pecifically, an out membrane protease (OmpT) cleavage site was engineered into the switch loop of RF1
275 -segments and a strategically placed SPase I cleavage site, we determined how targeting and stability
276 s residue is just before the gamma-secretase cleavage site, we then investigated whether the p75(alph
277 locus no longer produces transcripts with S2 cleavage sites, we generated a simplified system to iden
283 ssing-alternative splice sites, introns, and cleavage sites-which are often rare and lowly expressed
284 cing error-prone NHEJ events at the nuclease cleavage site, while avoiding the unwanted effects of gl
285 wo canonical sites adjacent to the necessary cleavage site, while CsrD acts by overcoming CsrA-mediat
286 ethod for predicting eight protease-specific cleavage sites, while GPS-CCD and LabCaS outperformed ot
288 id position 5 upstream of the signal peptide cleavage site, with cleavage-inducing glycine (G) result
289 s the 5'-ruler mechanism for defining target cleavage sites, with accessibility of positions -2 to -5
290 onal analysis, we identified the FCV-induced cleavage site within G3BP1, which differs from the polio
293 Previous studies identified a caspase-3 cleavage site within the amyloid-beta precursor protein,
295 all cases the existence of a unique trypsin cleavage site within the membrane domain (out of 16 pote
300 of accurate predictors of the substrates and cleavage sites would facilitate understanding of proteas