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1 at the nuclear periphery and clustering with co-regulated genes.
2 tional modules of co-expressed or putatively co-regulated genes.
3 revealed that LFR and SYD shared a subset of co-regulated genes.
4 odules that capture highly connected sets of co-regulated genes.
5 ond step, thus difficult to detect conserved co-regulated genes.
6 e at a subset of known BDR4, JMJD6, and CHD4 co-regulated genes.
7 (TFs) and associated target genes in sets of co-regulated genes.
8 ave opposing effects on the transcription of co-regulated genes.
9 association, identifying a large spectrum of co-regulated genes.
10 vary greatly among the elements of different co-regulated genes.
11 catter plots, and dissection into cliques of co-regulated genes.
12 ework and algorithm PHYLOCLUS for predicting co-regulated genes.
13  biologist in detecting activity patterns of co-regulated genes.
14 zation of cis-regulatory elements in sets of co-regulated genes.
15 omoter regions of a given set of potentially co-regulated genes.
16 regulatory motifs in the upstream regions of co-regulated genes.
17 roximal promoter sequences for large sets of co-regulated genes.
18 bp G2/M-specific sequence common to a set of co-regulated genes.
19               Some of these form clusters of co-regulated genes.
20 DS but instead result from the clustering of co-regulated genes, a function of mammalian genome organ
21                              Importantly, at co-regulated genes, aberrantly methylated bases accumula
22  and allow users to rapidly identify sets of co-regulated genes across a variety of tissues and a lar
23 quently (but not exclusively) annotated with co-regulated genes and exhibited increased MED1 occupanc
24  goal of these analyses is to define sets of co-regulated genes and identify patterns of gene express
25 fying DNA-binding sites from a collection of co-regulated genes and their nearby non-coding DNA seque
26 ne expression paradigm, implying that active co-regulated genes and their regulatory factors cooperat
27                        The identification of co-regulated genes and their transcription-factor bindin
28 such as the detection of co-expressed genes, co-regulated genes and transcription factor binding moti
29 de insights into how competing behaviors are co-regulated.Genes and circuits involved in sleep and se
30 his approach uncovered new regulons (sets of co-regulated genes) and their putative cis-regulatory el
31  modeling of network topology, definition of co-regulated genes, and placement of previously uncharac
32                                              Co-regulated genes are likely to reveal themselves by sh
33                                              Co-regulated genes are not identified in traditional mic
34 y by binding to the same enhancer regions of co-regulated genes as Gli1.
35                        Identifying groups of co-regulated genes by monitoring their expression over v
36 ine biosynthetic genes and define a group of co-regulated genes called the A-B regulon.
37                     Subsequently, 428 highly co-regulated genes (|CC| >/= 0.8) were clustered unsuper
38 combined with motif conservation upstream of co-regulated gene clusters allowed the construction of p
39         The ANN model also predicts specific co-regulated gene clusters associated with differential
40                             Genes within the co-regulated gene clusters tend to have relevant functio
41 ion piggybacking, which consequently created co-regulated gene clusters.
42                                              Co-regulated genes consistent between the human and mous
43 gulatory modules governing the expression of co-regulated genes, Creme 2.0; and a dynamic portal to m
44 nd zld mutant embryos, indicating that early co-regulated genes do not cluster into nuclear sub-domai
45  Transcriptome analyses identify clusters of co-regulated genes during NC specification and migration
46  We have now identified the remainder of the CO-regulated genes encoded in a contiguous region of the
47 on analysis (WGCNA) was used to identify (a) co-regulated gene expression and DNAm signatures, and (b
48                                 We confirmed co-regulated gene expression using P-element mutants.
49 interact; thus, RNA assembly may result from co-regulated gene expression.
50 he ability to retrieve upstream sequences of co-regulated genes for promoter analysis using MEME (Mul
51 silico tool to identify physical clusters of co-regulated genes from gene expression data.
52     Combinatorial sequence analysis of these co-regulated genes generated a hypothetical regulatory c
53 approach, utilizing machine learning-defined co-regulated gene groups (iModulons) as design parts con
54 ing motifs in a set of promoter sequences of co-regulated genes has become an important approach to d
55 mental methods capable of generating sets of co-regulated genes have become commonplace, however, rec
56                     Many SlyA- and PhoP/PhoQ-co-regulated genes have functions associated with the ba
57                           In fact, all three co-regulated genes have the potential to interact not on
58 ults in increased expression of the Hha/H-NS co-regulated gene hilA without affecting the expression
59             We identified discrete groups of co-regulated genes (i.e., co-expression modules) and tes
60                         It is often used for co-regulated genes identified through experimental appro
61 correlated biological pathways in humans and co-regulated genes in a humanized mouse model.
62 imulation studies and application to sets of co-regulated genes in bacteria.
63 rogram for predicting regulatory motifs from co-regulated genes in prokaryotes or lower eukaryotes; (
64 cose represses transcription of a network of co-regulated genes in Saccharomyces cerevisiae, ensuring
65              We use our framework to predict co-regulated genes in the bacterium Bacillus subtilis us
66  and on three biologically validated sets of co-regulated genes in yeasts, flies and humans.
67 uced well-defined modules of region-specific co-regulated genes, in contrast to standard coexpression
68 1-ICD-overexpressing BS149 cells revealed 42 co-regulated genes, including glycoprotein non-metastati
69 ing classifies co-expressed, and potentially co-regulated, genes into biologically informative catego
70                 Identification of modules of co-regulated genes is a crucial first step towards disse
71 ted method to date for identifying conserved co-regulated genes is a two-step approach.
72 nalysis reveals that the number of conserved co-regulated genes is small in eukaryotes, as has been s
73 transcriptional patterning model is that the co-regulated genes knirps (a short gene) and knirps-rela
74 ression changes, we demonstrate a cluster of co-regulated genes known to have impact in the extracell
75 roaches have focused on inferring modules of co-regulated genes, linking these modules with regulator
76 amines the upstream or downstream regions of co-regulated genes, looking for cis-regulatory bipartite
77                      Furthermore, modules of co-regulated genes may only show tight co-expression acr
78                                  To identify co-regulated genes, MicrobesOnline can search for genes
79 ning and user-friendly platform for building co-regulated gene modules and the tools necessary for th
80 k analyses revealed high preservation within co-regulated gene modules between cultivated and wild gr
81 nisms from diverse phylogenetic clades (4678 co-regulated gene modules, 3466 regulators and 9291 cis-
82 he discovery of co-expressed and potentially co-regulated gene modules.
83                                              Co-regulated gene network analyses provide evidence of m
84 enriched biological processes and discovered co-regulated gene networks and transcription factors pre
85 hylogenetic analyses of individual genes and co-regulated gene networks revealed more shared patterns
86 s are required, capable of discovering large co-regulated gene networks.
87 ne turnover and regulation of INO1 and other co-regulated genes of phospholipid biosynthesis is discu
88                                              Co-regulated genes of the Imprinted Gene Network are inv
89 ave tentatively named this novel gene Parkin co-regulated gene, or PACRG.
90 asizing common features of large clusters of co-regulated genes, our results highlight the extent to
91  meiosis-expressed gene 1 (MEIG1) and Parkin co-regulated gene (PACRG) interact, and that sperm-assoc
92  found that MEIG1 associates with the Parkin co-regulated gene (PACRG) protein, and that testicular P
93 equence similarity or clustering patterns of co-regulated genes, phylogenetic profiles, protein-prote
94 ial to uncover genes of interest, cohorts of co-regulated genes programs, and previously undetected p
95 ression dataset by looking for enrichment of co-regulated genes relative to an empirical null distrib
96              We show that clusters of highly co-regulated genes representing distinct cellular pathwa
97                          Regulons, which are co-regulated gene sets sharing binding sites for a commo
98 ntered around the data-driven computation of co-regulated gene sets using Independent Component Analy
99 h the source signals of the transcriptome as co-regulated gene sets, and the activity levels of the u
100     A major subnetwork containing 61 closely co-regulated genes showed highly significant enrichment
101 ative positioning of either co-functional or co-regulated genes, stems from two main approaches.
102 tocyte genes reveal two distinct clusters of co-regulated genes, suggesting that male and female game
103 presence of false positives among the set of co-regulated genes than is the ROC AUC.
104 xies for CRMs, we endeavor to find PFRs near co-regulated genes that are comprised of similar short,
105 l model for biclustering to infer subsets of co-regulated genes that covary in all of the samples or
106 xamined the phenotypes of mutations in seven co-regulated genes that had no published role in chemota
107 put into clusters so as to infer the sets of co-regulated genes, that is, the regulons.
108 deled as a collection of regulatory modules: co-regulated genes, the conditions under which they are
109  transcription cofactors p300/HDAC1 to these co-regulated genes, thereby altering the host gene expre
110  model for interrogating the contribution of co-regulated genes to in vivo phenotype as its multinucl
111 popular technique used to identify groups of co-regulated genes, to infer unknown gene functions.
112                             To identify virB co-regulated genes, we searched the Brucella suis 1330 a
113                                              Co-regulated genes were grouped together and visualized
114                           For a given set of co-regulated genes, WGRV returns statistically enriched
115 lactin and growth hormone are also among the co-regulated genes with extreme outlier expression, both
116 es that are enriched in a set of potentially co-regulated genes with respect to the whole genome.
117 nd developmental stages revealed clusters of co-regulated genes with shared cis promoter elements, wh
118 p- and down- regulation of several groups of co-regulated genes, with ADR1-dependent genes being the
119 cing experiments further reveals clusters of co-regulated genes, with in situ hybridization confirmin
120 ntly challenging problem is that of defining co-regulated genes within those gene lists.

 
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