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1 hod of combined bisulfite restriction assay (COBRA).
2 by combined bisulfite restriction analysis (COBRA).
3 or combined bisulfite restriction analysis (COBRA).
4 tionally optimized broadly reactive antigen (COBRA).
5 ay [combined bisulfite restriction analysis (COBRA)].
6 with some of them being easily detectible by COBRA.
7 us and can be quantitatively monitored by SB-COBRA.
8 ends beyond the sequence design space of the COBRA.
9 stent with its role at retrieval proposed by CoBRA.
10 howed that FastMM is 2~400 times faster than COBRA 3.0 in performing flux balance analysis and knocko
12 This interface was fully compatible with COBRA 3.0, enabling users to easily perform complex appl
13 Although the state-of-art modeling toolbox, COBRA 3.0, is powerful, it requires substantial computin
16 mal genome assembly of Naja naja, the Indian cobra, a highly venomous, medically important snake.
18 e "cortical binding of relational activity" (CoBRA) account (Shimamura, 2011), which suggests that th
20 erformed a screen for genetic suppressors of cobra, an Arabidopsis mutant with defects in cellulose f
22 peptides (9), fasciclin-like proteins (20), COBRA and 10 homologs, and novel potential signaling pep
25 primers for bisulfite-PCRs (MSP, sequencing, COBRA and multiplex-MSP), allowing the determination of
26 tors of cellulose synthesis, suggesting that COBRA and the cellulose synthase complex reside in close
29 e a novel Computational Brewing Application (COBRA) and apply it to modeling oligomerization chemistr
30 Combined Bisulfite Restriction Analysis (COBRA) and bisulfite sequencing analysis revealed that t
31 and combined bisulfite restriction analysis (COBRA), and quantitative SB-COBRA was performed to study
33 ode integration also enables an expansion in COBRA application scope via high-precision, high-perform
40 rt the development and characterization of a COBRA-based vaccine for both seasonal and pandemic H1N1
42 In contrast to properdin, both gCs bound to cobra C3; this finding suggests that gC-1 and properdin
43 ntology and Open Biology Ontologies formats, COBrA can import and export ontologies in the Semantic W
52 abidopsis (Arabidopsis thaliana) root is the COBRA (COB) gene that belongs to a multigene family.
54 ts with severe asthma as comparative groups (COBRA cohort [Cohorte Obstruction Bronchique et Asthme;
61 et the available evidence as suggesting that COBRA facilitates cellulose crystallization from the eme
65 onstraint-based reconstruction and analysis (COBRA) framework has been widely used to study steady-st
73 ntibodies induced by wild-type H1N1 viruses, COBRA HA antigens elicited sera with the broadest HAI re
74 seasonal-like and pandemic-like wild-type or COBRA HA antigens were exchanged with homologous regions
77 ferrets with COBRA HA based viruses or using COBRA HA based vaccines to boost preexisting antibodies
82 irus-like particle (VLP) vaccines expressing COBRA HA proteins elicited antibodies with hemagglutinat
83 ere exchanged with homologous regions in the COBRA HA proteins to determine which regions and residue
85 nt and characterization of 17 prototype H3N2 COBRA HA proteins were screened in mice and ferrets for
90 irst study to show the effectiveness of H3N3 COBRA HA vaccines in a host with preexisting immunity to
94 rus and vaccinated with a single dose of the COBRA HA VLP vaccines elicited antibodies with HAI activ
95 eadth of HAI activity after vaccination with COBRA HA VLP vaccines than COBRA preimmune ferrets vacci
96 nism(s) of expanded Ab breadth elicited by a COBRA HA-based immunogen and advances efforts toward des
97 iming naive ferrets with broadly reactive H1 COBRA HA-based vaccines boosted preexisting antibodies i
98 ) Ab-secreting cells elicited by a candidate COBRA hemagglutinin (HA) (termed P1) were compared with
100 ing combined bisulfite restriction analysis (COBRA), hypermethylation of this fragment was detected i
101 e imposition of loop-law constraints with ll-COBRA improves the consistency of simulation results wit
110 onstraint-Based Reconstruction and Analysis (COBRA) is currently the only methodology that permits in
111 on influenza vaccines, such as HA head-based COBRA, is to stimulate broadly protective neutralizing a
112 of the glycosylphosphatidylinositol-anchored COBRA-LIKE gene family in Arabidopsis (Arabidopsis thali
113 andidate gene approach and found to encode a COBRA-like protein similar to rice (Oryza sativa) BC1 an
114 n patterns for transcripts of genes encoding COBRA-like proteins and other cell wall metabolism-relat
115 he course of seed development, we identified COBRA-LIKE2 (COBL2), a member of the glycosylphosphatidy
117 integer programming approach called loopless COBRA (ll-COBRA), which can be used to eliminate all ste
119 The sensitivity and reproducibility of Bio-COBRA make it a valuable tool for the analysis of DNA me
121 tionally optimized broadly reactive antigen (COBRA) methodology against H1N1, H3N2, and H5N1 viruses.
123 ysis (McCOBRA), which adapt standard MSP and COBRA methods to a melting curve analysis based platform
124 d provides an additional constraint for many COBRA methods, enabling the acquisition of more realisti
129 to improve flux predictions on three common COBRA methods: flux balance analysis, flux variability a
130 onstraint-based reconstruction and analysis (COBRA) methods at the genome scale have been under devel
131 onstraint-based reconstruction and analysis (COBRA) methods to simulate, analyze and predict a variet
132 ic resonance studies of the cell wall of the cobra mutant also indicated that, in addition to decreas
135 by combined bisulfite restriction analysis (COBRA); mutation of K-ras, p53, p16, and p14 genes by se
137 lylepis, Jameson's mambas D. jamesoni, water cobras Naja annulata, and eastern forest cobras N. subfu
138 holipase A2 (PLA2) from the venom of Chinese cobra (Naja naja atra) has high activity on zwitterionic
139 diameter) are exposed to PLA2 isolated from cobra (Naja naja naja) venom at varying enzyme concentra
141 ted the genome of a venomous snake, the king cobra (Ophiophagus hannah), and compared it, together wi
143 we created a rAAV viral vector expressing a COBRA-optimized influenza hemagglutinin antigen with mod
144 enerated following immunization of mice with COBRA P1 and the corresponding purified mAbs were charac
145 (mon1) that suppressed the growth defects of cobra, partially restored cellulose levels, and restored
148 vaccination with COBRA HA VLP vaccines than COBRA preimmune ferrets vaccinated with VLP vaccines exp
151 onstraint-based reconstruction and analysis (COBRA) provides a molecular mechanistic framework for in
155 very diverse, with ~300 terrestrial species (cobras, taipans, etc.) and ~60 fully marine sea snakes,
156 putationally optimized broadly reactive Ags (COBRA) targeting H1 elicit a broad cross-reactive and cr
160 of Hemachatus haemachatus (African Ringhals cobra) that specifically inhibits factor X (FX) activati
161 for Combined Bisulfite Restriction Analysis (COBRA), that incorporates an electrophoresis step in mic
163 port here on a quantitative technique called COBRA to determine DNA methylation levels at specific ge
164 e apply a Computational Brewing Application (COBRA) to simulate the oxidation of squalene in the pres
172 of a combination treatment in early RA (the COBRA trial), and 1 placebo-controlled trial of a new de
180 xchange mass spectrometric evaluation of the cobra venom (Naja naja naja) group IA phospholipase A 2
183 epleting complement in chinchillas by use of cobra venom factor (CoVF) rendered two otherwise avirule
186 r first hamster hearts had been surviving in cobra venom factor (CVF) + CyA-treated rats for 10 days,
187 administered the complement-depleting agent cobra venom factor (CVF) 24 hr before HI lesioning and e
188 nografts, the inhibition of complement using cobra venom factor (CVF) accelerates pulmonary xenograft
189 the graft aorta in combination with systemic cobra venom factor (CVF) administration to deplete compl
190 prevented by brief complement inhibition by cobra venom factor (CVF) and sustained T-cell immunosupp
193 anted heterotopically into rats treated with cobra venom factor (CVF) develop disease over 72 hours.
194 me of primary immunization by treatment with cobra venom factor (CVF) diminished serum anti-PPS14 con
195 dy sought to (i) investigate the efficacy of cobra venom factor (CVF) in preventing hyperacute reject
197 activation of complement by i.v. infusion of cobra venom factor (CVF) is known to be P-selectin depen
198 in vivo, because complement depletion using cobra venom factor (CVF) markedly reduced the efficacy o
199 y after systemic activation of complement by cobra venom factor (CVF) or after intrapulmonary deposit
200 or inhibited by intraperitoneal injection of cobra venom factor (CVF) or complement receptor-related
202 depletion by treatment of athymic rats with cobra venom factor (CVF) partially reverses this effect.
205 on of complement C3 or its inactivation with Cobra Venom Factor (CVF) result in impaired muscle regen
207 ing pulmonary xenograft dysfunction by using cobra venom factor (CVF) to deplete recipient complement
209 xplored by intraperitoneal injection of 35 U cobra venom factor (CVF), 24 hours before antibody injec
211 A/2 as islet allograft recipients as well as cobra venom factor (CVF), a complement blocker, treatmen
212 l plasma, with or without heat inactivation, cobra venom factor (CVF), or lipopolysaccharide plus int
213 groups: no therapy, daily administration of cobra venom factor (CVF), or splenectomy plus daily CVF.
214 (MMF), anti-CD40L monoclonal antibody (mAb), cobra venom factor (CVF), pig hematopoietic growth facto
215 as generated in vivo by infusion of purified cobra venom factor (CVF), thymocyte apoptosis was signif
216 ction process was further investigated using cobra venom factor (CVF), which systemically depleted th
222 (GV) with the induction of lung injury using cobra venom factor (CVF); b) PLV-CVF group, animals rece
223 ion was significantly (p < 0.001) delayed by cobra venom factor (CVF; 11 +/- 8 h in four of five case
224 1 microg/mouse), we depleted complement with cobra venom factor (CVF; 7 U/mouse, intravenously [i.v.]
226 health and disease; for instance, the use of cobra venom factor and depletion of C3 provided the init
227 was inhibited by complement depletion using cobra venom factor and did not develop in C3(-/-) mice.
228 llowing systemic activation of complement by cobra venom factor and in the L-selectin-, P-selectin-,
229 eukostasis in mice systemically infused with cobra venom factor and intrapulmonary transendothelial m
230 term after transient complement depletion by cobra venom factor and T cell immunosuppression by cyclo
231 ic activation by the alternative pathway and cobra venom factor C3 convertases; and 4) for susceptibi
233 This transient protection was abrogated by cobra venom factor depletion of complement from FcgammaR
234 C3(-/-) mice, and control mice injected with cobra venom factor developed pronounced corneal opacific
236 Depletion of circulating complement with cobra venom factor eliminated, as expected, injury recor
237 after elastase perfusion, mice treated with cobra venom factor exhibited a mean aortic diameter of 9
238 t C3 in the periphery through treatment with cobra venom factor had a seizure rate comparable to that
240 e LPS injection, activation of complement by cobra venom factor led to significant elevation of serum
243 The effect of complement depletion with cobra venom factor on porcine bone marrow cell (BMC) eng
245 ated injury, either by the administration of cobra venom factor or soluble complement receptor I to t
246 diac transplants to survive long term (i.e., cobra venom factor plus cyclosporin A), inhibition of HO
250 pig hearts transplanted into rats treated by cobra venom factor to avoid the hyperacute rejection.
253 required for the protective effect of CRP as cobra venom factor treatment eliminated the effect of CR
254 ontributed to serum-induced dry eye disease, cobra venom factor was used to deplete complement activi
255 els, C3(-/-) mice and mice depleted of C3 by cobra venom factor were more susceptible to C. neoforman
259 i-T-cell and natural killer cell antibodies, cobra venom factor, medronate-liposomes, and 4 Gy of who
260 swine kidney, maintenance therapy comprised cobra venom factor, mycophenolate mofetil, and an anti-C
261 T-cell depletion, complement depletion with cobra venom factor, mycophenolate mofetil, anti-CD154 mo
262 scued in E8.5 Cmas-/- mice upon injection of cobra venom factor, resulting in exhaustion of the mater
263 hymocyte globulin, complement depletion with cobra venom factor, short courses of anti-CD154 mAb ther
264 epletion with ATG, complement depletion with cobra venom factor, short courses of cyclosporine, mycop
265 howed that pretreatment of C57BL/6 mice with cobra venom factor, which depleted serum of complement a
266 globulin, an anti-CD20 mAb (Rituximab), and cobra venom factor, with maintenance therapy based on bl
267 ubstituted with the corresponding segment of cobra venom factor, Xenopus, or trout C3 (chimeric C3s)
268 determined the C5-cleaving properties of the cobra venom factor-dependent C5 convertase (CVF, Bb) mad
272 rmal Lewis rats (complement-sufficient) with cobra venom factor-treated rats (complement-depleted).
273 rogenitor cells in marrow, were increased in cobra venom factor-treated recipients compared with simu
280 pressure (PEEP) before the administration of cobra venom factor; d) CVF-PLV group, animals received p
281 ls received partial liquid ventilation after cobra venom factor; e) CVF-PEEP group, animals received
282 CVF-PEEP group, animals received PEEP after cobra venom factor; f) PLV only group, animals received
283 to the GP Ib thrombin-binding site or by the cobra venom metalloproteinase, mocarhagin, that hydrolyz
284 n Ib-IX-V complex, we utilized mocarhagin, a cobra venom metalloproteinase, to generate a fragment (H
286 ants of the group IA phospholipase A(2) from cobra venom were constructed and expressed in the methyl
287 act with CTX A3, a major component of Taiwan cobra venom, by use of affinity chromatography, circular
290 hallenge were vaccines that contained the P1 COBRA VLP and either the X3 or X6 COBRA VLP vaccine.
295 iction analysis (COBRA), and quantitative SB-COBRA was performed to study methylation of the TWIST2 p
296 ionally optimized broadly reactive antigens (COBRA) was used to design novel hemagglutinin (HA) vacci
297 y abundant CTX homologues from the Taiwanese cobra, we showed that slight variations on the spatial d
298 ogramming approach called loopless COBRA (ll-COBRA), which can be used to eliminate all steady-state
299 tionally optimized broadly reactive antigen (COBRA), which uses worldwide sequencing and surveillance
300 he combination of a well-established method, COBRA, which interrogates DNA methylation via the restri