ライフサイエンスコーパス: contiguity

1 he adult hippocampus, regardless of temporal contiguity.

2 can be attributed to the absence of temporal contiguity.

3 ed by searching for overlaps consistent with contiguity.

4 the Xq arm is available cloned in long-range contiguity.

5 ity genome assemblies with high accuracy and contiguity.

6 ead data, resulting in substantially greater contiguity.

7 ve repetitive elements and generate sequence contiguity.

8 structure that reveals long-range molecular contiguity.

9 this assembly to be of excellent quality and contiguity.

10 adaptor and index sequences while preserving contiguity.

11 s to obtain assemblies with chromosome-scale contiguity.

12 nd is not well correlated with statistics on contiguity.

13 p between events, not just on their temporal contiguity.

14 related organisms while obtaining long-range contiguity.

15 trogram amplitude (r for adipose=0.73, r for contiguity=0.77, r for collagen=0.68) compared with coll

16 ig N50 = 46 Mbp) that increases the sequence contiguity 120-fold and annotate it using 6.5 million fu

17 genome (rheMac8), rheMacS increases sequence contiguity 75-fold, closing 21,940 of the remaining asse

18 viously described calculation of beta-strand contiguity allowed us to design mutations that changed t

19 ly approaches, our methods improved assembly contiguity, allowing for investigation of the role of re

20 Functional contiguity among the neurons is suggested by their havin

21 ent technological advances that improve both contiguity and accuracy and emphasize the importance of

22 s of these assemblers in terms of integrity, contiguity and accuracy for different variables, includi

23 known genomes and evaluating the integrity, contiguity and accuracy of the assembly using the reads

24 a wide range of GC content and measured the contiguity and accuracy of the resulting assemblies.

25 Our assemblies are comparable in contiguity and accuracy to the current D. melanogaster g

26 with slightly different outcomes in terms of contiguity and accuracy.

27 HY assembly offers contiguity and base accuracy, but requires generating da

28 sequences show considerable improvements in contiguity and completeness for regions with high conten

29 technologies have dramatically improved the contiguity and completeness of genome assemblies.

30 produced from these devices can improve the contiguity and completeness of genome assemblies.

31 98.9% based upon BUSCO, confirming the high contiguity and completeness of the assembled genomes.

32 , our assembly surpasses previous genomes in contiguity and completeness, resolving 26 centromeric an

33 COBRA improves viral genome assembly contiguity and completeness, thus the accuracy and relia

34 n one copy of a region, leading to breaks in contiguity and compromising downstream steps such as gen

35 the macrocyclic host cavity, suggesting that contiguity and conformational constraints are fundamenta

36 long nanopore reads are then used to provide contiguity and correct orientation for matching REXTAL s

37 ALCI, a novel measure combing contiguity and depth, is the most accurate predictor for

38 es the human and goat references in sequence contiguity and facilitates the annotation of hard to ass

39 literature, namely, serial position effects, contiguity and forward asymmetry effects, and the semant

40 rst, we obtained reference genomes with high contiguity and gene completeness by combining Nanopore l

41 hough highly accurate assemblies were found, contiguity and internal consistency metrics were poor pr

42 d data, and we show that SAMBA yields better contiguity and introduces fewer errors than competing me

43 performing other approaches in terms of both contiguity and phasing completeness.

44 ructs assemblies from PacBio HiFi reads with contiguity and quality comparable to those of the state-

45 consistently and substantially improves the contiguity and quality of each assembly.

46 ithms has stimulated big improvements in the contiguity and quality of genome assemblies.

47 ad sequencing technologies have improved the contiguity and, as a result, the quality of genome assem

48 eters that quantify intertrabecular spacing, contiguity, and a measure of longitudinal alignment call

49 ment I: To evaluate atrial lesion formation, contiguity, and width, a point-by-point approach was use

50 tantiated on the discovery of spatiotemporal contiguity; and categorical representations, primarily i

51 Measures of contiguity are not strongly correlated with information

52 f problems that arise from relying solely on contiguity as a measure of genome assembly quality as we

53 Hebbian Learning should not be reduced to contiguity, as it detects contingency and causality.

54 ate lineages, including newly generated high-contiguity assemblies from the Vertebrate Genomes Projec

55 Leveraging these high-contiguity assemblies, we generated a highly complete sp

56 d function of EVEs, we took advantage of the contiguity associated with long-read sequencing to gener

57 integral [FTI], and ablation index [AI]) and contiguity (automated interlesion distance [ILD]).

58 m We significantly improved T. gondii genome contiguity (average N50 of ~6.6 Mb) and added ~2 Mb of n

59 e import of an intact perception of temporal contiguity between actions and their effects for the sen

60 r learning that is sensitive to the temporal contiguity between events.

61 by alignment, which assumes conservation of contiguity between homologous segments.

62 Furthermore, spatial contiguity between olfactory and auditory stimuli was re

63 As synaptic modifications depend on temporal contiguity between presynaptic and postsynaptic activity

64 Our results suggest that, inasmuch as contiguity between T- and B-cell epitopes provides enoug

65 tly from wild type flies, as did the area of contiguity between the motoneuron axons and the PAPSI, w

66 Because of the anatomic contiguity between the pancreas and the gastrointestinal

67 Disrupting response-outcome contiguity by delaying the onset and offset of shock by

68 The new assembly improves contiguity by two to three orders of magnitude with resp

69 l experience, because altering that temporal contiguity can robustly alter adult IT position and size

70 Three of the urban form metrics studied (contiguity, circularity, and vegetation) have a statisti

71 t steps to produce a final draft genome with contiguity comparable with other references.

72 ts show significant improvements in assembly contiguity compared to the input contigs, while preservi

73 ach demonstrate a substantial improvement in contiguity, completeness, and accuracy over the current

74 ipt selection scheme that takes into account contiguity constraints and, where available, knowledge a

75 cal read coverage patterns of RNA-seq reads, contiguity constraints from read pairs and spliced reads

76 cal terms of reward and uncertainty, such as contiguity, contingency, prediction error, magnitude, pr

77 Specifically, we evaluate contiguity, correctness, coverage, and the duplication r

78 by naturally occurring unsupervised temporal contiguity experience.

79 y approach that achieves remarkable assembly contiguity for both Drosophila and human assemblies with

80 pe-resolved) genome sequence with end-to-end contiguity for each chromosome at reasonable cost and ef

81 rid which significantly improved the gapless contiguity for horse and donkey autosomal genomes and th

82 e Ensembl genebuild conferred proof of model contiguity for the RNA-seq models.

83 nopore sequencing provided thousands of high-contiguity genomes, phage and plasmid sequences (>60% no

84 ria; 34.3 Mbp), with improved nuclear genome contiguity (> 4.2 Mbp), annotation and completeness (> 9

85 gle-fly diploid assemblies are comparable in contiguity (>1 Mb contig N50), completeness (>98% comple

86 While the promise of better contiguity has held true, the relatively high error rate

87 ion formation, but what constitutes temporal contiguity has never been specified.

88 (Ser-Pro(4))(n) modules corroborate the Hyp contiguity hypothesis and indicate that Hyp O-glycosylat

89 purification of AGPs and the use of the Hyp contiguity hypothesis for predicting the Hyp O-glycosyla

90 The Hyp contiguity hypothesis predicts arabinosylation of contig

91 The Hyp contiguity hypothesis predicts contiguous Hyp residues a

92 The Hyp contiguity hypothesis predicts that contiguous Hyp resid

93 the primary sequence as described by the Hyp contiguity hypothesis, which predicts contiguous Hyp res

94 wall digests and the predictions of the Hyp contiguity hypothesis.

95 hose predicted from DNA sequences by the Hyp contiguity hypothesis.

96 uality optical maps can dramatically improve contiguity in even our most fragmented base assembly.

97 This temporal contiguity in network activity points to temporal order

98 een T(INM) and disrupted ER-nuclear membrane contiguity in osmotically or ferroptotically stressed ma

99 ts for domain-domain interactions and domain contiguity in polymerase function.

100 evolutionary old brain function that enables contiguity in sensory perception and orientation in time

101 Our experiments show an increase in contiguity in the consensus assembly when the original a

102 Contiguity increased over ten-fold and >80% of filled ga

103 Ablation line contiguity index (ALCI) was developed as a novel automat

104 orms as an efficient means of capturing both contiguity information and primary sequence with a singl

105 d for methods that capture various scales of contiguity information at a throughput commensurate with

106 ut of massively parallel sequencing with the contiguity information provided by large-insert cloning

107 he content of different pools as a source of contiguity information.

108 These assemblies were assayed for contiguity, internal consistency, and accuracy.

109 ovel automated algorithm combining depth and contiguity into one single criterion.

110 capable of recognizing homology when loss of contiguity is beyond the possibility of alignment.

111 l research on learning assumes that temporal contiguity is essential for association formation, but w

112 conditioning" (CTC) paradigm in which CS-US contiguity is restored by re-presenting the CS simultane

113 m a memory of a trace CS-US association when contiguity is restored.

114 ty genome assembly for cassava with improved contiguity, linkage, and completeness; almost 97% of gen

115 e assemblies have good accuracy, short-range contiguity, long-range connectivity, and coverage of the

116 A queen contiguity matrix defined neighboring counties, and perm

117 e assembly (number of contigs and scaffolds, contiguity metrics such as contig N50, total sequence le

118 present its 326 Mb genome, assembled to high contiguity (N50: 9.88 Mb) with 23 chromosomes on 24 scaf

119 from DeepConsensus improve hifiasm assembly contiguity (NG50 4.9 megabases (Mb) to 17.2 Mb), increas

120 r hybrid assembly markedly improves upon the contiguity observed from traditional shotgun sequencing

121 To improve the contiguities of these assemblies, we generated BioNano G

122 e haplotype, hifiasm strives to preserve the contiguity of all haplotypes.

123 assembled genome; second, that the degree of contiguity of an assembly varies enormously among differ

124 the use of long-read sequencing improves the contiguity of assembled viral genomes compared to short-

125 the output provided by Alvis can improve the contiguity of assemblies, while maintaining correctness.

126 roblem, dramatically increasing the scaffold contiguity of assemblies.

127 (3) To obtain contiguity of coding regions, sequencing at three- to fo

128 seq and fragScaff to substantially boost the contiguity of de novo assemblies of the human, mouse, an

129 ds, which greatly improves both accuracy and contiguity of de novo SAG assemblies.

130 epresentations, based solely on the temporal contiguity of experienced task states, without an abilit

131 s were found to improve the completeness and contiguity of genome assemblies compared to conventional

132 he possibility of dramatically improving the contiguity of genome assemblies.

133 ta to identify what governs completeness and contiguity of genome assemblies.

134 To ensure contiguity of genomic sequence in these regions, we desi

135 sed assemblers that only aim to maintain the contiguity of one haplotype, hifiasm strives to preserve

136 Finally, we use the improved contiguity of our assembly along with the current model

137 ebs actually do exhibit a strong bias toward contiguity of prey, that is, toward intervality.

138 Spatial contiguity of RET and H4 may provide a structural basis

139 Finally, exploiting the contiguity of the 13 pseudomolecules, we identified 13 p

140 mmonly assessed using statistics relating to contiguity of the assembly.

141 The inserted domain breaks the sequence contiguity of the domain into which it is inserted leadi

142 ich reduces both the length of the reads and contiguity of the final assembly.

143 Flye nearly doubled the contiguity of the human genome assembly (as measured by

144 the order of the aggregates: the greater the contiguity of the hydrophobic patches on the monomer sur

145 Disruption of the contiguity of the parS(pSM) sequence array destabilizes

146 lignment of similar tissue regions, and (ii) contiguity of the prostate boundary.

147 Despite the contiguity of the XGRAF binding site and half-GRE, the t

148 short-read sequencing data, but the assembly contiguity of these metagenome-assembled genomes is cons

149 The temporal contiguity of these two types of arousals was altered in

150 The contiguity of this assembly is approaching that of the f

151 Targeted alteration of the natural temporal contiguity of visual experience caused specific changes

152 ast partly supported by the natural temporal contiguity of visual experience, because altering that t

153 quirements and a 5-fold increase in assembly contiguity on both genomic and metagenomic datasets rela

154 truct sequence scaffolds with megabase-scale contiguity ordered into chromosomal pseudomolecules.

155 Excellent contiguity over repeat arrays and complete annotation of

156 asing performs comparably to trio phasing in contiguity, phasing accuracy, and assembly quality, outp

157 We describe a method that exploits contiguity preserving transposase sequencing (CPT-seq) t

158 The key to the method that we call "contiguity preserving transposition" sequencing on beads

159 pproach for genome-wide haplotyping based on contiguity-preserving transposition (CPT-seq) and combin

160 improving both integration methods, assembly contiguity reached chromosome-arm-levels.

161 To determine whether the lack of contiguity renders trace conditioning hippocampal depend

162 emblies and the results demonstrate improved contiguity statistics and higher genome and gene coverag

163 vel haplotype aware assessments of coverage, contiguity, structure, base calling, and copy number wer

164 r genome at ~4 to 5x coverage, with sequence contiguity sufficient to identify more than 85% of avian

165 ngle copy more reliably and achieved greater contiguity than a conventional whole-genome assembly met

166 tance genes with high accuracy and had lower contiguity than LR assemblies.

167 e assemblies with higher genome coverage and contiguity than other popular metagenomic assemblers on

168 uces assemblies with better completeness and contiguity than state-of-the-art long-read assemblers.

169 genome assemblies with substantially higher contiguity than the Biomphalaria reference genome, we sh

170 Pocillopora cf. effusa, with vastly improved contiguity that allows us to study the functional organi

171 To determine the minimum level of Hyp contiguity that directs arabinosylation, we designed a s

172 As a result of the increased contiguity, the numbers of transposable elements (TEs) a

173 , the sequence is of sufficient accuracy and contiguity to be declared substantially complete and to

174 h intensity, continuously, and in geographic contiguity to enable population reduction.

175 CSK is brought in contiguity to LCK via binding to a transmembrane adaptor

176 first while attention was paid to geographic contiguity to maximize herd protection.

177 at achieves comparable assembly accuracy and contiguity to other competing tools.

178 contact probability maps, providing midrange contiguity to support robust, accurate chromosome-scale

179 Data were gathered regarding lesion contiguity, transmurality and dimensions; the changes in

180 metrics for spatial clustering accuracy and contiguity, uniform manifold approximation and projectio

181 ng-read sequencing has dramatically improved contiguity, whereas gene annotations are available for j

182 ted than those from enterococci-and assembly contiguity, which was also key for successful plasmid re

183 The HOTTIP gene is located in physical contiguity with HOXA13 and directly controls the HOXA lo

184 onding dapL gene was found to lie in genomic contiguity with other dap genes, suggestive of a polycis

185 We achieve chromosome-level contiguity with substantial sequence accuracy (<1 error

186 s even if the S2 odor was never presented in contiguity with the aversive stimulus.

187 ntracytoplasmic neutrophils develop membrane contiguity with the demarcation membrane system, thereby

188 er lipids and lipid mixtures which establish contiguity with the existing membrane, thereby providing

189 reatic tissue found on ectopic sites without contiguity with the main pancreas.

190 ract rather than melanoma included a lack of contiguity with the uvea (n = 20) on videoimaging using

191 cted to a peripheral nerve in close temporal contiguity with transcranial magnetic stimulation delive

192 s explained by lack of both lesion depth and contiguity within the deployed radiofrequency circle.

193 re explained by incomplete transmurality and contiguity within the deployed radiofrequency circle.