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1 sembly' (TEDA) method that only uses a 5'-3' exonuclease.
2 into a viable target for the Xrn2 terminator exonuclease.
3 enhanced 2.5-fold by incorporating the Trex2 exonuclease.
4 ied ONs demonstrate high stability toward 3'-exonuclease.
5 complex, frequently in combination with Cas4 exonuclease.
6 degradation of this structure by the RNase R exonuclease.
7 urn leads to their degradation by the DIS3L2 exonuclease.
8 leading to their degradation via the DIS3L2 exonuclease.
9 ked ends and are resistant to degradation by exonucleases.
10 t of DNA assembly methods that employ single exonucleases.
11 ay naturally inhibit degradation by cellular exonucleases.
12 rmits digestion of the RNA body by conserved exonucleases.
13 activities of various 3'-end polymerases and exonucleases.
14 y protecting it from phosphatases and 5-to-3 exonucleases.
15 organs and (iii) protects siRNAs from 5-to-3 exonucleases.
16 , we identify potential inhibitors for DEDDh exonucleases.
17 ss requiring several nuclear and cytoplasmic exonucleases.
18 loom's syndrome (BLM) helicase together with exonuclease 1 (EXO1) and DNA2 nucleases catalyze kilobas
20 log 3 (Msh3) stimulates 5' to 3' excision by exonuclease 1 (Exo1) from a single-strand break 5' to th
25 study, we show that Metnase associates with exonuclease 1 (Exo1), a 5'-exonuclease crucial for 5'-en
26 luding the Bloom syndrome (BLM) helicase and exonuclease 1 (EXO1), play a major role in generating th
30 Biallelic mutations of three prime repair exonuclease 1 (TREX1) cause the lupus-like disease Aicar
33 tudies have reported that Three-prime repair exonuclease 1(TREX1), an endogenous DNA exonuclease, pre
37 his study, we demonstrated the role of novel exonuclease 5 (EXO5) gene in androgen-induced double str
44 6 mutation that lacks Pol e's polymerase and exonuclease activities has increased dNTP concentrations
46 nts, we show that both the DNA synthesis and exonuclease activities of the POLD1 subunit contribute t
48 is a vertebrate nuclease with both endo- and exonuclease activities that acts on a wide range of nucl
50 east Polepsilon-P286R analog retains partial exonuclease activity and is more accurate than exonuclea
51 type I alkaline nuclease, UL12, has 5'-to-3' exonuclease activity and shares homology with nucleases
54 in remarkable protection of that oligo from exonuclease activity as it remains hybridized to the dsD
57 omain of OsCCR4a and OsCCR4b exhibited 3'-5' exonuclease activity in vitro, and point mutation of a c
61 Depletion of MRE11 and abrogation of its exonuclease activity negatively impact viral replication
62 e the 5' flap endonuclease but not the 5'-3' exonuclease activity of Fen1, and chemically inhibiting
64 d newly replicated genome is degraded by the exonuclease activity of MRE11, and the fragmented nascen
65 sion site is enlarged into a DNA gap via the exonuclease activity of MRX, which is stimulated by Sae2
67 ed nucleotides are excised through the 3'-5' exonuclease activity of the DNA polymerase holoenzyme.
70 inhibitors, ATA and PV6R, indeed inhibit the exonuclease activity of the viral protein NP exonuclease
71 n together, our results demonstrate that the exonuclease activity of UL12 is essential for the produc
73 In this communication, we confirm that the exonuclease activity of UL12 is essential for viral repl
75 eavage activity was not required for Exo1 5'-exonuclease activity on the lagging strand daughter DNA,
76 suggest that Metnase enhances Exo1-mediated exonuclease activity on the lagging strand DNA by facili
77 ase is often used either alone for its 3'-5' exonuclease activity or together with a 5'-3' exonucleas
78 vity, but confers on hEXOG a strong 5'-dsDNA exonuclease activity that precisely excises a dinucleoti
79 dation than pol; under oxidative conditions, exonuclease activity therefore declines more rapidly tha
80 2 nuclease, which is hypothesized to use its exonuclease activity to digest through the lesion to pro
81 orthogonal method, LC-MS, to investigate 3' exonuclease activity toward the antisense strand metabol
82 HDH activity although it does not have 5'-3' exonuclease activity, and the Rat1-Rai1 complex can comp
84 ffinity, reduced thermostability, diminished exonuclease activity, defective catalytic activity, and
85 results demonstrate that independent of its exonuclease activity, the proofreading subunit of the re
102 ombinant proteins, we show that the combined exonuclease and endonuclease activities of recombinant M
103 recognizes DNA double-strand breaks and has exonuclease and endonuclease activities that help to ini
105 ork provides important insights into the PHP-exonuclease and reveals unique properties that make it a
106 ands, acting primarily as a processive 5'-3' exonuclease and secondarily as a 5'-flap endonuclease.
108 e demonstrate that MrfB is a metal-dependent exonuclease and that the N-terminus of MrfB is required
109 The (R) isomer provided protection from 5' exonuclease and the (S) isomer provided protection from
110 revisiae Full-length resection requires Exo1 exonuclease and the DSB-responsive kinase Tel1, but not
111 ith short homologous ends were treated by T5 exonuclease and then transformed into Escherichia coli t
113 RNA cap protects the primary transcript from exonucleases and recruits cap-binding complexes that med
114 n) in this region, within a gene encoding an exonuclease, associates with parasite recrudescence foll
116 Surprisingly, EXO1 is not the major 5' -> 3' exonuclease, but the DSB-responsive kinase ATM proved a
117 yme was originally identified as a 3' --> 5' exonuclease, but we show here that NrnA is bidirectional
120 nalysis by the chromatin immunoprecipitation-exonuclease (ChIP-exo) method allowed the identification
123 his study we have investigated how 3' and 5' exonucleases contribute towards the successful terminati
124 e associates with exonuclease 1 (Exo1), a 5'-exonuclease crucial for 5'-end resection to mediate DNA
132 g a well-defined replicon, we show that both exonuclease-deficient Pole (Pole-exo-) and Pole-P301R ge
134 RNAs and the increased protection against 5'-exonuclease degradation afforded by the ANA modification
135 cooperate to recruit CtIP and promote MRE11 exonuclease-dependent fork restart while suppressing the
136 niently prepared from PCR products by lambda-exonuclease digestion and streptavidin magnetic bead iso
137 we determined that ligand binding alters the exonuclease digestion kinetics to an extent that closely
138 n of cDNA ends (RACE), 5' radiolabeling, and exonuclease digestion, which revealed the following obse
146 ssays, we show here that the bacterial 3'-5' exonucleases DnaQ and ExoT can trim long 3' overhangs of
147 ur findings implicate the E. coli host 3'-5' exonucleases DnaQ and ExoT in spacer adaptation and reve
148 ed of an N-terminal DNA flap endonuclease/5' exonuclease domain (FEN/EXO) and a C-terminal DNA polyme
154 y subunits (Pol31 and Pol32) lie next to the exonuclease domain of Pol3 but do not engage the DNA.
155 ) proteins and/or documented mutation in the exonuclease domain of POLE; and (2) MMRP cohort with nor
156 (MMR) proteins, and DNA sequencing for POLE exonuclease domain were done to classify tumors as p53 a
157 l changes in the protein are confined to the exonuclease domain, with R301 pointing towards the exonu
164 epair (MMR) across biology depicts extensive exonuclease-driven strand-specific excision that begins
165 erminal segments absent in other DnaQ family exonucleases enclose the central chimeric active sites.
172 ion involves phosphorylation of the 5' to 3' exonuclease EXO1 by the phosphoinositide 3-kinase-like k
173 naling pathway that controls the activity of exonuclease Exo1 to prevent aberrant fork resection duri
176 during RC DNA to CCC DNA conversion, two 3' exonucleases, exonuclease I (Exo I) and Exo III, were us
178 tro integration assays, deep sequencing, and exonuclease footprinting, we show that Cas1-2/I-E-via th
181 ase that is distinct from the canonical DEDD exonucleases found in the Escherichia coli and eukaryoti
182 le possible mechanism by showing that the 3'-exonuclease function of the polymerase is not needed.
183 ike gamma DNA polymerases, ablation of 3'-5' exonuclease function resulted in a modest 5-8-fold error
184 In mutants of FRY1 and the nuclear 5'-3' exonuclease genes XRN2 and XRN3, we find that a large nu
187 to CCC DNA conversion, two 3' exonucleases, exonuclease I (Exo I) and Exo III, were used in combinat
191 etected the activities of two model enzymes, exonuclease I and uracil DNA glycosylase with high sensi
192 ble method that utilizes exonuclease III and exonuclease I to interrogate the binding properties of s
195 leic acid self-assembly circuitry and enzyme exonuclease III (Exo III) for the differentiation of sin
198 escribe a generalizable method that utilizes exonuclease III and exonuclease I to interrogate the bin
199 Mechanistically, Rad50 restricts the Mre11 exonuclease in an ATP binding-dependent manner, preventi
201 ments revealed PLD3 as the principal acid 5' exonuclease in HeLa cells, where it showed a markedly hi
202 d the (S) isomer provided protection from 3' exonuclease in the context of a terminally modified olig
203 r another function of UL12, we introduced an exonuclease-inactivating mutation into the viral genome.
204 These results reveal a distinct mechanism of exonuclease inactivation by the P301R substitution and a
205 lease site, an outcome not observed with the exonuclease-inactive Pol epsilon-D290A,E292A variant lac
206 er these observations are consistent with an exonuclease-independent MMR strand excision mechanism th
207 d by a 3' to 5' single-stranded DNA-specific exonuclease, indicating Cas9 exposes the 3' flap for pot
209 he resistance of circular dsDNA molecules to exonuclease, internally calibrated with the native plasm
210 nuclease, transforming it from a destructive exonuclease into a recombination-promoting repair enzyme
215 n different biological matrices show that 5'-exonuclease is the most prevalent nuclease activity in e
216 mediates, we investigate the requirements of exonucleases known to be involved in 5.8S maturation at
217 A recombination system that includes a 5'-3' exonuclease (lambda Exo) and a single strand annealing p
221 aE1 crystal structure, which reveals the PHP-exonuclease mechanism that can be exploited for antibiot
222 d by a mechanism involving the mitochondrial exonuclease MGME1, and the loss of this enzyme results i
225 y known RNA viruses to encode a proofreading exonuclease (nsp14-ExoN), as well as other replicase pro
227 omes this inhibition to promote the 3' -> 5' exonuclease of MRX, which requires ATP hydrolysis by Rad
228 ted based on crystal structures of 5' and 3' exonuclease oligonucleotide complexes with 5'-(R)- and 5
231 hat RNase AM, a recently identified 5' to 3' exonuclease, performs the last step of 5S rRNA 5'-end ma
233 at is highly conserved with the endonuclease/exonuclease/phosphatase (EEP) domain-containing CCR4 fam
234 than that of the Gibson method utilizing T5 exonuclease, Phusion DNA polymerase, and DNA ligase.
237 e common architectural features, such as the exonuclease/polymerase and C-terminal domains (CTDs) of
238 pair exonuclease 1(TREX1), an endogenous DNA exonuclease, prevents immune activation by depleting dam
239 mutations impact APE2 DNA binding and 3'-5' exonuclease processing, and also prevent efficient APE2-
240 ike activity is supplied by DnaQ-superfamily exonucleases, providing a beautiful example of cellular
241 nd provide nucleotide-level insight into the exonuclease requirements for mammalian rRNA processing.
245 ectrophoresis well and low susceptibility to exonucleases revealed that the biologically relevant ecD
247 at does not involve any of the six 3' --> 5' exonucleases (RNase T, RNase PH, RNase D, RNase BN, RNas
252 tion limits access of the 3'-terminus to the exonuclease site and promotes binding at the polymerase
255 that R301 interferes with DNA binding to the exonuclease site, an outcome not observed with the exonu
258 transfer pathway between the polymerase and exonuclease sites displays additional kinetic states not
261 rcoma-associated herpesvirus (KSHV) alkaline exonuclease SOX, encoded by open reading frame 37 (ORF37
263 nergy path connecting the polymerization and exonuclease states of E. coli replicative DNA polymerase
264 merase I inhibitor camptothecin, loss of WRN exonuclease stimulates fork inactivation and accumulatio
265 a manganese binding site in the vestigial 3' exonuclease subdomain and a non-catalytic water-bridged
268 5' end was more stable in the presence of 5'-exonuclease than an oligonucleotide of the same sequence
270 replication depends on a proofreading 3'-5' exonuclease that is associated with the replicative DNA
272 um tuberculosis (Mtb) uses its intrinsic PHP-exonuclease that is distinct from the canonical DEDD exo
273 from Saccharomyces cerevisiae is a 3' -> 5' exonuclease that is responsible for 5' end degradation i
274 gest potential lead inhibitors for the DEDDh exonucleases that may pave the way for designing nucleas
275 transcriptional modifications, by miRs and 3'exonucleases that process PLD2 mRNA, thus increasing PLD
276 that DIS3L and DIS3L2 are critical 3' to 5' exonucleases that regulate miRNA stability, with the add
277 s process, identifying conserved PARN-family exonucleases that trim piRNAs to their mature size in si
278 R 3' end processing likely involves multiple exonucleases that work in parallel and/or sequentially,
279 ucleoplasm, La binds to and protects from 3' exonucleases, the ends of precursor tRNAs, and other tra
280 r processing is co-opted by cellular non-Cas exonucleases, thereby offsetting the need for Cas4.
281 sbuvir terminated RNA resists removal by the exonuclease to a substantially higher extent than RNA te
282 e exchange occurs in vivo, allowing Poldelta exonuclease to prevent catastrophic accumulation of Pole
285 This ensures the pruning of exposed ends by exonucleases to aptly sized substrates for integration i
286 uencing, an approach that combines ChIP with exonuclease treatment to pinpoint regulatory elements in
287 damage or down-regulation of the cytoplasmic exonuclease TREX1 enhances ISG expression in BLM-deficie
289 DNA fragments and that the cytoplasmic 3'-5' exonuclease Trex1 is required for their degradation.
294 and binding inhibits aptamer digestion by T5 exonuclease, where the extent of this inhibition correla
295 also PRNPIP and PINT1), a putative 3'-5' RNA exonuclease, which preferentially associates with DENV-2
296 this requirement is due to cytoplasmic ssDNA exonucleases, which inhibit natural transformation.
297 This reinforced structure blocks the 5'-->3' exonuclease Xrn1 for the production of pathogenic subgen
298 required for their degradation by the 5'->3' exonuclease Xrn1 to enact opposing effects on the UPR.
299 mediate both processes, including the 5'-3' exonuclease Xrn1, are responsible for a cross-talk betwe