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1 at Fsmapk is present as a single copy in the fungal genome.
2 saccharide biosynthetic operons and in other fungal genomes.
3 earrangements (CRs) are widely documented in fungal genomes.
4 nctions, SM-coding regions rapidly evolve in fungal genomes.
5 egradation" (i.e., antibiotic resistance) in fungal genomes.
6 rotrophs, which we analyzed along with other fungal genomes.
7 ined in a rapidly evolving region of diverse fungal genomes.
8 ns, based on annotations from proteins in 46 fungal genomes.
9 rces driving the diversification of GH28s in fungal genomes.
10 n 2, that identifies protein-coding genes in fungal genomes.
11 markable increase in the number of sequenced fungal genomes.
12 ses found in a variety of plant, animal, and fungal genomes.
13 ching, analysing and visualizing features of fungal genomes.
14 esent major components of animal, plant, and fungal genomes.
15 ge DNA inserts (up to 230 kb) into plant and fungal genomes.
16 integrating large DNA inserts into plant and fungal genomes.
17 scale up sequencing towards 10,000 annotated fungal genomes.
18 ogs occurring infrequently in prokaryote and fungal genomes.
19                   Comparative analyses of 31 fungal genomes (12 generated for this study) suggest tha
20     Here, the increasing number of sequenced fungal genomes allowed for systematic identification of
21 SMs are found in contiguous gene clusters in fungal genomes, an atypical arrangement for metabolic pa
22                        The complexity of the fungal genome and lifestyle questions the existence of o
23 e a complete toolset, including an annotated fungal genome and methods for genetic manipulation of th
24  includes over 23 000 bacterial genomes, 400 fungal genomes and 100 protist genomes, in addition to 5
25  query to search their counterparts in other fungal genomes and found that the secretome profiles clu
26     We provide here an overview of available fungal genomes and highlight some of the biological insi
27 formatic pipeline was created to interrogate fungal genomes and identify multicopy sequences for cfDN
28 t great biosynthetic potential exists across fungal genomes and is awaiting discovery.
29       Despite the availability of over 1,000 fungal genomes and several decades of compound discovery
30 es exist in all Ascomycete and Basidiomycete fungal genomes and that all possess an SH3 domain and a
31                Notably, RtcB is missing from fungal genomes and these organisms normally produce line
32 enzymes for polysaccharide deconstruction in fungal genomes and will help identify new strains and en
33                          Here we sequence 30 fungal genomes, and perform transcriptomics with three r
34                                     However, fungal genome arrangement and its function in developmen
35 threaten global biodiversity, the paucity of fungal genome assemblies impedes thoroughly characterizi
36    FunGAP predicts protein-coding genes in a fungal genome assembly.
37 cestors evolved into the typical filamentous fungal genome by a combination of gradual gene loss, tur
38 eoformans NMT allele was introduced into the fungal genome by homologous recombination.
39 uence resource for assessing completeness of fungal genomes called FGMP (Fungal Genome Mapping Projec
40 gene clusters (BGCs) in a single filamentous fungal genome combined with the historic number of seque
41                   Models of the evolution of fungal genomes compatible with these results, and their
42           On a broad-scale functional level, fungal genomes contain a higher proportion of metabolic
43                      Many plant, animal, and fungal genomes contain cytosine DNA methylation in asymm
44                                         Some fungal genomes contain multiple genes encoding homologue
45 ty, in a client/server relationship with the Fungal Genome Database (FGDB), and as a web-browsing too
46  and homologous TER sequences from available fungal genome databases by computational searches.
47 ed gut fungi (CGF) catalog, encompassing 760 fungal genomes derived from the feces of healthy individ
48               We build on existing models of fungal genome evolution by conceptualizing Starships as
49                                  Many of the fungal genomes examined contain genes encoding homologue
50 aising the hypothesis that the plasticity of fungal genomes facilitates these lifestyles.
51  SNP callers using our FDR method with three fungal genomes, finding that it was able achieve a high
52 he function of antibiotics and for exploring fungal genomes for new antibiotics.
53        To test this, we examined 100 diverse fungal genomes for the simplest type of cluster, gene pa
54 3 prokaryotic genomes from 1056 species, 206 fungal genomes from 13 species, and 39 eukaryotic viral
55  Here, we present a combined analysis of 135 fungal genomes from 73 saprotrophic, endophytic and path
56          Here, we combined and annotated 552 fungal genomes from the class Sordariomycetes and examin
57                             Over 40 complete fungal genomes have been publicly released with an equal
58 e phylogenies and used them to highlight how fungal genomes have changed over time.
59                                              Fungal genomes have mechanisms to defend against mobile
60 enomes spanning section Flavi and compare 31 fungal genomes including 23 Flavi species.
61 encoding these two proteins are found in all fungal genomes including those for the pathogens, Candid
62 rhizal lifestyle evolution, we sequenced new fungal genomes, including 13 ectomycorrhizal (ECM), orch
63 y discussing how a more balanced sampling of fungal genomes, including population genomic data, will
64       Application of the new method to known fungal genomes indicates substantial improvement over ex
65                            Analysis of other fungal genomes indicates that only the budding yeasts ha
66 s that the family was represented in all but fungal genomes, indicating an ancient origin for the fam
67               The generation of thousands of fungal genomes is leading to a better understanding of g
68 comprehensive understanding of these dynamic fungal genomes is needed to identify novel solutions for
69 struct such condition-specific expression in fungal genomes is particularly important to metabolicall
70                  A notable characteristic of fungal genomes is that genes involved in successive step
71  completeness of fungal genomes called FGMP (Fungal Genome Mapping Project).
72 fy nine putative laccase-coding genes in the fungal genome of Leucocoprinus gongylophorus cultivated
73         RCDPS homologs are widely encoded in fungal genomes; other members of this family can synthes
74 mic data, will lead to greater insights into fungal genome plasticity and its origins.
75 ide variety of mechanisms that contribute to fungal genome plasticity, including sexual reproduction,
76                                              Fungal genomes range in size from 2.3 Mb for the microsp
77 how host specificity may be encoded into ECM fungal genomes remains poorly understood.
78                               A survey of 54 fungal genomes revealed that seven other species have pr
79 all unannotated regions of five well-studied fungal genomes (Saccharomyces cerevisiae, Candida albica
80                   The continuously expanding fungal genome sequence data have sparked genome-directed
81 t integration, analysis and dissemination of fungal genome sequences and other 'omics' data by provid
82 irst fungus in 1996, the number of available fungal genome sequences has increased by an order of mag
83 amatically based on the availability of more fungal genome sequences in recent years.
84                             Of the available fungal genome sequences, only seven other closely relate
85                                     Although fungal genome sequencing and assembly have become trivia
86 e process of annotation in a large number of fungal genome sequencing projects.
87                               (v). Different fungal genomes shared few putative orthologous PKS genes
88       Furthermore, a detailed analysis of 10 fungal genomes shows that this holozoan signature in RiB
89  our largest increase in plant, metazoan and fungal genomes since the project's inception creating on
90 terial populations and possesses the largest fungal genome so far annotated (773.104 Mbp), with more
91 ur approach to a set of nine fully sequenced fungal genomes spanning 150 million years, generating a
92  apply ALLEGRO's sgRNA libraries to untested fungal genomes, such as Rhodotorula araucariae.
93 and RNAi-ddm1) and 120 genes/1441 TEs in the fungal genome suggesting a host-induced remodeling of th
94  proteins amongst the 42 available sequenced fungal genomes suggests unexpected roles for circadian t
95 ated the evolution of these genes across 115 fungal genomes, testing each gene fusion for evidence of
96 arships are a recently discovered feature in fungal genomes that are, in some cases, predicted to con
97  coding capacity of mimivirus, the minimized fungal genomes that contain elements of bacterial metabo
98 iDB is a functional genomic resource for pan-fungal genomes that was developed in partnership with th
99 cently sequenced Drosophila genomes and nine fungal genomes to address the problem of accurate gene-t
100          We apply our procedure to seventeen fungal genomes to create a genome-wide catalogue of gene
101 ylogenetic and genomic data, we analyzed 387 fungal genomes to test a proof-of-concept for the use of
102                  Based on annotations of two fungal genomes (Verticillium dahliae and Plicaturopsis c
103 -molecule long-read sequencing of 16 diverse fungal genomes, we observed that up to 2.8% of all adeni
104     We begin by describing the plasticity of fungal genomes, which ranges from large-scale variation
105 splays alignments of sequences from multiple fungal genomes, while the Sequence Similarity Query tool
106 wide intergenic sites for most bacterial and fungal genomes within minutes.

 
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