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1 , SNPs) and RNA (messenger, micro, and viral genomic RNA).
2 uctural polyprotein precursor Gag with viral genomic RNA.
3 al RdRp pulls this helix open to release the genomic RNA.
4 he 3' untranslated region (UTR) of the viral genomic RNA.
5 he complex secondary structure of the target genomic RNA.
6 ens having 10-12 segments of double-stranded genomic RNA.
7 a single nucleocapsid protein and the viral genomic RNA.
8 ortion of unspliced MoMLV RNA that serves as genomic RNA.
9 th of knowledge acquired regarding the viral genomic RNA.
10 ctural polyprotein Gag associates with viral genomic RNA.
11 as mapped to nucleotides 4164 to 4333 in the genomic RNA.
12 uantities of subgenomic RNAs, in addition to genomic RNA.
13 e the infectivity of transfected coronavirus genomic RNA.
14 rotein (N) associates tightly with the viral genomic RNA.
15 anslated from mRNA produced from replicating genomic RNA.
16 ES) of the encephalomyocarditis virus (EMCV) genomic RNA.
17 virus particles resulting in release of the genomic RNA.
18 teady-state HCV protein expression and viral genomic RNA.
19 ible for replicating hepatitis C virus (HCV) genomic RNA.
20 ring of the conserved 5' and 3' ends of each genomic RNA.
21 cts as a primer for reverse transcription of genomic RNA.
22 rm an immature capsid and also package HIV-1 genomic RNA.
23 hat which occurs during the encapsidation of genomic RNA.
24 Pol proteins or are packaged into virions as genomic RNA.
25 define the RNA secondary structures of CHIKV genomic RNA.
26 ponse to ZIKV infection, which degraded ZIKV genomic RNA.
27 f a 5'-GCCAGCC-3' motif present in the viral genomic RNA.
28 oat protein (CP) encapsidate each of the BMV genomic RNAs.
29 interactions between the capsid and the BMV genomic RNAs.
30 enables the confinement or compaction of the genomic RNAs.
31 ural components of virions and include viral genomic RNAs.
32 about the organization of their encapsulated genomic RNAs.
33 d the nearly complete sequences of the three genomic RNAs.
34 either random cellular RNAs or average viral genomic RNAs.
35 c-length mRNAs of vc sense were detected for genomic RNAs 3, 4, 7, and 8 but not for other RNA specie
37 complementary (vc)-sense strands of all WMoV genomic RNAs accumulated asymmetrically in infected whea
39 diffusely distributed in the cytoplasm with genomic RNA also in perinuclear vesicle-like structures
41 trated the ability to specifically recognize genomic RNA and both viral and host proteins as it traff
42 ase Xrn1 likely loads on the 5' end of viral genomic RNA and degrades processively through approximat
43 ependent RNA polymerase replicates the viral genomic RNA and is a primary drug target for antiviral t
44 , instead, correlated with cleavage of viral genomic RNA and modulation of the host transcriptome.
47 itative information on the abundance of both genomic RNA and mRNA/antigenomes can be simultaneously d
48 quencing must be used to distinguish between genomic RNA and mRNA/antigenomic RNA because significant
50 hypotheses for the initial structure of the genomic RNA and oligomeric state of integrase are tested
51 zation, which precludes integrase binding to genomic RNA and perturbs the morphogenesis of new viral
53 get the translational machinery to the viral genomic RNA and provide a framework for modeling the arc
54 -1 capsid (CA) protein lattice encases viral genomic RNA and regulates steps essential to target-cell
56 Nonstructural proteins are translated from genomic RNA and structural proteins from subgenomic RNA.
57 t the MTE interacts with the 5' UTRs of both genomic RNA and subgenomic RNA1 via long-distance kissin
58 ociated gene 5 (MDA5) colocalized with viral genomic RNA and the nucleoprotein (N) as early as 6 h po
59 lementarity between the 3' terminus of viral genomic RNA and the nucleotides located in the vicinity
60 n the replication and selective packaging of genomic RNA and the transcription and translation of sub
61 ion by binding directly to both sites in the genomic RNA and, at least in part, by stimulating intern
62 oduced similar numbers of infection foci and genomic RNAs and formed virions in inoculated leaves as
63 es harboring a 5' terminal deletion in their genomic RNAs and that these viruses alone or associated
65 ation relative to the lipid membrane and the genomic RNA, and its interactions with the transmembrane
66 Neutrophil RSV F, G, and N proteins, RSV N genomic RNA, and messenger RNA (mRNA) were quantified.
67 d on the complete CMPV virion, including the genomic RNA, and virus-like nanoparticles (VLPs) based o
68 Within influenza virus infected cells, viral genomic RNA are selectively packed into progeny virions,
69 Viral ribonucleocapsids harboring the viral genomic RNA are used as the template for viral mRNA synt
72 frames present in the complementary sense of genomic RNAs are expressed through subgenomic- or near-g
73 the cytoplasm of eukaryotic cells, uses its genomic RNA as a template for both viral protein synthes
75 the AIDS retrovirus, HIV, requires that its genomic RNA be packaged in assembling virus particles wi
77 the bunyavirus La Crosse, the 5' end of the genomic RNA binds as a hook-like structure proximal to t
79 through the incomplete degradation of viral genomic RNA by the cytoplasmic 5'-3' exoribonuclease Xrn
80 uV P bind NC to participate in access to the genomic RNA by the viral RNA-dependent-RNA polymerase.
81 comprises a ribonucleoprotein complex of the genomic RNA coated by a nucleocapsid protein (N) and ass
82 The RNP core comprises the negative-sense genomic RNA completely coated by the nucleocapsid protei
83 ialized RNA synthesis machine comprising the genomic RNA completely encapsidated by the viral nucleoc
85 e assembled recombinant MS2 capsids with non-genomic RNA containing the capsid incorporation sequence
86 ion (3(') UTR) of turnip crinkle virus (TCV) genomic RNA contains a cap-independent translation eleme
89 s B populations characterized by 5' terminal genomic RNA deletions ranging from 17 to 50 nucleotides
90 mmunodeficiency virus type 1 (HIV-1) Gag and genomic RNA determinants required for encapsidation are
92 omyocytes demonstrated that deleted forms of genomic RNAs displayed early replication activities in t
94 tage of assembly involving compaction of the genomic RNA driven by multiple RNA packaging signal-CP i
96 uring the hierarchical processes directed by genomic RNA during viral infection.IMPORTANCE Enteroviru
100 nted negative-strand RNA viruses comprises a genomic RNA encased within a nucleocapsid protein (N-RNA
102 ey viral polyproteins Gag and Gag-Pol and as genomic RNA for encapsidation into assembling viral part
104 tion step, wherein dsDNA is synthesized from genomic RNA for subsequent insertion into the host genom
105 al nucleotides (nt) of West Nile virus (WNV) genomic RNA form a penultimate 16-nt small stem-loop (SS
106 packed complexes of nucleocapsid protein and genomic RNA form the core of viruses and assemble within
109 e have characterized the structure of 5' UTR genomic RNA from coxsackievirus B3 using selective 2'-hy
110 cilitates the export of unspliced retroviral genomic RNA from simple type-D retroviruses such as SRV-
111 zation of cis-acting elements present on Ty1 genomic RNA from the GAG region that control reverse tra
112 iral RNA and changed the primary location of genomic RNA from the perinuclear region to the plasma me
114 and influenza virus mRNA and negative-strand genomic RNA (gRNA) accumulated to high levels at 8 h aft
115 ) is covalently bound to the 5' end of viral genomic RNA (gRNA) and associates with host eIF4E for su
116 gle copy of the maturation protein binds the genomic RNA (gRNA) and is required for attachment of the
118 omote internal expression of the CP from the genomic RNA (gRNA) both in vitro and in vivo An absence
120 the phage capsid, priming the Mat-connected genomic RNA (gRNA) for its release from the virions.
121 sor specifically selects the unspliced viral genomic RNA (gRNA) from the bulk of cellular and spliced
122 ctors for reverse transcription of the viral genomic RNA (gRNA) into DNA shortly after viral entry.
124 rus capsid protein (Cp) selectively packages genomic RNA (gRNA) into the viral nucleocapsid to produc
126 The HIV-1 Gag protein is responsible for genomic RNA (gRNA) packaging and immature viral particle
128 bstitutions in the NS5 protein reduced viral genomic RNA (gRNA) replication rate to achieve a more fa
135 e Gag and Gag-Pol capsid proteins as well as genomic RNAs (gRNAs) packaged by Gag into virions underg
139 obe, Courtney et al. (2019a) find that HIV-1 genomic RNA has much more m(5)C than cellular mRNA.
140 ynamics of primate and nonprimate lentiviral genomic RNAs (HIV-1 and feline immunodeficiency virus [F
141 port here the secondary structure of the HIV genomic RNA-human tRNA(Lys)(3) initiation complex using
143 uncovered a previously unsuspected role for genomic RNA in regulating formation of viral capsids, re
145 iral transcription/replication, however, the genomic RNA in the nucleocapsid must be accessible by th
147 those from healthy infants, expressed RSV N genomic RNA, indicating uptake of whole virus; 17 of 20
148 5' and 3' untranslated regions of the viral genomic RNA, inhibition of DENV-vsRNA-5 led to significa
149 Translation of the hepatitis C virus (HCV) genomic RNA initiates from an internal ribosome entry si
153 ate that the NC-binding aptamers disrupt Gag-genomic RNA interaction and negatively affect genomic RN
156 gulator of innate immunity using comparative genomics RNA interference screens in Caenorhabditis eleg
157 of innate immunity, we performed comparative genomics RNA interference screens in the nematode Caenor
160 lisation that retroviruses can convert their genomic RNA into DNA provided a route by which they coul
161 te immunity despite reverse transcription of genomic RNA into double-stranded DNA, an activity that m
163 mbrane-bounded protein lattice that recruits genomic RNA into the virus and forms the shell of a budd
164 argets.The mechanism underlying packaging of genomic RNA into viral particles is not well understood
169 human immunodeficiency virus type 1 (HIV-1) genomic RNA is necessary to produce the complete viral p
173 LPs) from ddm1 and ddm1rdr6 mutants in which genomic RNA is reverse transcribed into complementary DN
175 ss a ribonucleoprotein template in which the genomic RNA is sequestered within a homopolymer of nucle
178 o called psi-RNA, in the packaging domain of genomic RNA) is strongly affected by changes in ionic st
180 We hypothesized that the aptamers influence genomic RNA levels via perturbation of specific Gag-geno
181 that another factor(s) such as ORF1 or viral genomic RNA may be necessary for proper particle release
183 econd gag mRNA species that differs from the genomic RNA molecule by the absence of an intron in the
186 structural data to generate models of HIV-1 genomic RNA, nucleocapsid and integrase condensed into a
187 egavirales, utilizes a complex consisting of genomic RNA, nucleoprotein, the RNA-dependent RNA polyme
188 tructural proteins of one flavivirus and the genomic RNA of a heterologous strain can be assembled an
192 same enzyme (RNase H) is required to remove genomic RNA of the RNA/DNA replication intermediate.
193 (SHAPE) to structural analysis of authentic genomic RNA of the xenotropic murine leukemia virus-rela
194 mutation in a critical 3' UTR hairpin in the genomic RNA of turnip crinkle virus did not directly int
200 paring the nucleotide sequences of the three genomic RNAs of the modern and ancient viruses showed 98
203 RNA polymerase, 3Dpol, replicates the viral genomic RNA on the surface of virus-induced intracellula
205 ribosomal frameshifting (PRF) signal at the genomic RNA ORF1a/ORF1b junction revealed that PRF in IB
206 y dependent on a cis-acting RNA element, the genomic RNA packaging enhancer (GRPE), found within the
208 ed sequence at the 5' terminus of hantaviral genomic RNA plays an important role in viral transcripti
213 to chaperone tRNA(3)(Lys) placement onto the genomic RNA primer binding site; however, the timing and
214 viral filaments are produced and loaded with genomic RNA prior to insertion into the plasma membrane.
216 short sequences (packaging sites) within the genomic RNA promote rapid and efficient assembly through
217 be a result of an imbalance in the N protein/genomic RNA ratio leading to incomplete encapsidation.
218 lymph node cells showed the highest mRNA-to-genomic-RNA ratios in B cells and dendritic cells (DCs),
219 ter assembling HIV-1 Gag has associated with genomic RNA, recruited critical host factors involved in
220 red after assembling Gag has associated with genomic RNA, recruited critical host factors involved in
221 these two motifs--only four nucleotides per genomic RNA--reduced packaging 100-fold, comparable to t
222 cytosine (m(5)C) is highly enriched in viral genomic RNA relative to uninfected cellular mRNAs, and w
226 te that EILV is restricted both at entry and genomic RNA replication levels in vertebrate cells.
227 covalent linkage generated during the viral genomic RNA replication steps of a picornavirus infectio
228 the major target for antiviral therapies is genomic RNA replication, which occurs at poorly understo
231 iral assembly process and packaging of viral genomic RNA requires full-length Gag to produce infectio
235 We further demonstrate that the surrounding genomic RNA secondary structure influences frameshift ef
237 cleoprotein (N) encapsidates the three viral genomic RNA segments and plays a crucial role in viral R
239 iruses, while proteins encoded by additional genomic RNA segments displayed no significant homology w
240 intermolecular interaction between two viral genomic RNA segments of an avian influenza A virus using
242 cation strategy of BPMV RNA2, one of the two genomic RNA segments of this virus, and established an e
243 nfection by delivering into cells a suite of genomic RNA segments, each sheathed by the viral nucleoc
244 virus (WMoV), an Emaravirus, contains eight genomic RNA segments, the most in a known negative-sense
248 e mechanism of NSV RNA synthesis in that the genomic RNA sequestered in the nucleocapsid serves as th
249 assembled in these experiments with the sub-genomic RNAs show a layer of RNA density beneath the coa
250 Viruses preferentially encapsidate their own genomic RNA, sometimes as a result of the presence of cl
251 n infected cells and virions and encapsidate genomic RNA species to form an NP-RNA complex that, toge
252 ation factor eIF3 and recognition of the HCV genomic RNA start codon, molecular interactions that lik
254 -infected tissue attenuated the level of the genomic RNAs, suggesting that they, or their precursors,
257 pt N-RNA interaction and abrogate both viral genomic RNA synthesis and N-mediated translation strateg
260 perative effects between capsid proteins and genomic RNA that would occur in a packaging signal-media
261 into a SINV cDNA clone using sites in nsP3 (genomic RNA), the 3'UTR (genomic and subgenomic RNAs) an
262 k of interactions with positive-strand viral genomic RNA, the envelope membrane protein (M), and othe
263 (tRNA(Lys)(3)) and a region at the 5' end of genomic RNA; the 3' end of the tRNA acts as a primer for
265 s type 1 (HIV-1) is reverse transcription of genomic RNA to DNA, a process that is primed by cellular
267 a chaperone for NP, which encapsidates viral genomic RNA to form the NP-RNA complex, the functional t
268 s demonstrate the structural basis for HIV-1 genomic RNA to recruit beneficial cellular cofactor to v
269 wn N-nsp3 interaction in the localization of genomic RNA to the replicase complex at an early stage o
270 enomic RNA interaction and negatively affect genomic RNA transcription, processing, or stability.
274 gene expression induced by transfected viral genomic RNA (vgRNA) and reovirus infection, we discovere
275 which preferentially associates with DENV-2 genomic RNA via interactions with dumbbell structures in
280 reover, significantly higher levels of viral genomic RNA (vRNA) were observed during the heat shock p
284 proviral DNA showed few mutations, the viral genomic RNA was highly mutated, suggesting that errors o
285 om 103 horses were immunoreactive, and viral genomic RNA was present in 8 of the 36 seropositive anim
286 Finally, using RNA probes specific for RSV genomic RNA, we found that viral RNA predominantly local
288 rotein, phosphoprotein, and respective viral genomic RNA were clearly observed in human airway epithe
290 rus B3 strains with 5'-terminal deletions in genomic RNAs were isolated from a patient suffering from
292 ific RNA detected in muscle is predominantly genomic RNA, whereas RABV RNA detected in draining lymph
293 '-terminal siRNAs of each of the three viral genomic RNAs, whereas an increased production of siRNAs
294 in RNA packaging by encapsidating only their genomic RNA while avoiding packaging of the more abundan
295 clear envelope, and focal colocalizations of genomic RNA with an intact packaging signal (psi) and Ga
296 s, we identified multiple regions in the pre-genomic RNA with high affinity for core protein dimers.
297 viral integration site analysis.RESULTSHIV-1 genomic RNA with identical sequences were identified in
298 ind that necroptosis requires sensing of the genomic RNA within incoming virus particles via cytoplas