コーパス検索結果 (1語後でソート)
通し番号をクリックするとPubMedの該当ページを表示します
1 ring about two key structural changes to the glycopeptide.
2 forms were detected on the Asn144-containing glycopeptide.
3 se search and (7) quantification of O-GalNAc glycopeptides.
4 00 unique phosphopeptides and 1,500 unique N-glycopeptides.
5 ivatized monosaccharides, intact glycans, or glycopeptides.
6 and core fucosylated configurations of the N-glycopeptides.
7 ted, facilitating improved identification of glycopeptides.
8 nt methods for enrichment of N- and O-linked glycopeptides.
9 drous hydrazine to cleave the N-glycans from glycopeptides.
10 yield and identification of N- and O-linked glycopeptides.
11 mmonly used to enrich intact N- and O-linked glycopeptides.
12 major tumor clusters and 5 groups of intact glycopeptides.
13 nd tetra-antennary N-glycans in the forms of glycopeptides.
14 ic peptides, hydrophilic di-/tripeptides and glycopeptides.
15 the analysis of sialyl oligosaccharides and glycopeptides.
16 also improve the characterization of intact glycopeptides.
17 ephalosporins, macrolides and ketolides, and glycopeptides.
18 y facilitates the analysis of acidic and hMW glycopeptides.
19 hromatographic resolution for acidic and hMW glycopeptides.
20 guish between the spectra of N- and O-linked glycopeptides.
21 build a spectral database of N- and O-linked glycopeptides.
22 mmobilized peptides to yield site-containing glycopeptides.
23 piFluor-MS (RFMS) labeled N-glycans and also glycopeptides.
24 to detect potential cross-reactivity amongst glycopeptides.
25 tibiotics with a different target than other glycopeptides.
26 t methods do not afford sequencing of intact glycopeptides.
27 ntification of glycosylation sites or intact glycopeptides.
28 RFMS labeled glycans was similar to that of glycopeptides.
29 ion was 9.5% for cement spacers containing a glycopeptide (27/284) (with or without an aminoglycoside
30 nd de-salting of peptides, (3) enrichment of glycopeptides, (4) solid-phase peptide conjugation and r
31 andem mass spectrometry analysis of O-GalNAc glycopeptides, (6) identification of O-GalNAc glycopepti
34 f islets with synthetic AFP analog antiaging glycopeptide (AAGP) would enhance posttransplant engraft
35 , a mimic of the donor substrate, and with a glycopeptide acceptor substrate at 1.80-2.50 angstrom re
36 wer functional status and recent exposure to glycopeptides (adjusted odds ratio [aOR], > 2 for MRSA a
37 oxyl-based hydrogen bonds in self-assembling glycopeptides, affording versatile scaffolds with wide a
41 developing computational tools for intact O-glycopeptide analysis, which has greatly hindered the de
45 lectively specific glycan linkages on intact glycopeptides and get, to some degree, structure-specifi
46 tegy is being reported for the enrichment of glycopeptides and glycans using a piperazine modified po
48 on for the production of biologically active glycopeptides and glycoproteins, including therapeutic m
49 could fucosylate a wide variety of complex N-glycopeptides and intact glycoproteins by using alpha-fu
52 e variety of homogeneous, core-fucosylated N-glycopeptides and N-glycoproteins that are hitherto diff
54 showed near complete specificity for MUC4 TR glycopeptides and peptides, relative to all components o
56 e method was applied to the determination of glycopeptides and phosphopeptides in clinical specimens,
57 limits as low as 0.1 fmol and 0.05 fmol for glycopeptides and phosphopeptides, respectively), and go
60 and universal tool through permethylation of glycopeptides and their tandem mass spectrometric analys
61 d for desialylated Abeta1-15 (and Abeta1-17) glycopeptides and to (3) compare the concentrations of t
62 igest of rhPRG4 revealed 135 peptides and 72 glycopeptides, and confirmed that the protease could cle
63 tiple N- and O-glycosylation sites on single glycopeptides, and deriving more glycan structure inform
65 di-/tripeptides, large hydrophobic peptides, glycopeptides, and hydrophobic drug-linked peptides.
67 d constitutes a new route to access original glycopeptide- and glycolipid-type analogues possessing a
68 class of glycopeptide antibiotics-the known glycopeptide antibiotic complestatin and a newly discove
69 oxide was functionalized with vancomycin, a glycopeptide antibiotic known to have a specific interac
70 to protoplasts that were pretreated with the glycopeptide antibiotic phleomycin, a nonspecific DNA do
72 ly established dimerization of the important glycopeptide antibiotic vancomycin in four different aqu
76 he discovery of vancomycin in the 1950s, the glycopeptide antibiotics (GPAs) have been of great inter
80 ycin, and we show that the activity of other glycopeptide antibiotics with this feature can also be s
81 ed total syntheses of vancomycin and related glycopeptide antibiotics, their agylcons, and key analog
82 red two members of a new functional class of glycopeptide antibiotics-the known glycopeptide antibiot
84 ccuracy of the modified prediction model for glycopeptides approaches that of the prediction for nonm
85 tides are analysed by LC-MS/MS, while intact glycopeptides are characterised using a dedicated MS met
86 ill undoubtedly facilitate future studies of glycopeptides as clinical biomarkers but should also emb
88 n of mRNAs, proteins, glycosites, and intact glycopeptides, as well as the expression levels of glyco
89 ke advantage of limited fragmentation of the glycopeptides at low collision energy CID to produce lin
94 in future studies as potential targets in a glycopeptide biomarker panel to further improve accuracy
95 lycopeptides, (6) identification of O-GalNAc glycopeptides by database search and (7) quantification
96 of N-glycans prior to enrichment of O-linked glycopeptides by HILIC improved identification of O-link
98 ch in which a readily available bi-antennary glycopeptide can be converted in ten or fewer chemical a
100 gorithm for glycoproteomics in which complex glycopeptides can be identified in complex mixtures to a
102 n be relied upon to filter out all related N-glycopeptides carrying additional O-glycans defined by s
103 of an isotopically double-labeled Abeta1-15 glycopeptide, carrying the core 1 Galbeta3GalNAcalpha1-O
104 two sets of tandem mass spectra of N-linked glycopeptides cell lines acquired from breast cancer pat
106 admissions, greater use of fluoroquinolones, glycopeptides, cephalosporins and other expensive antibi
108 cal proteases (e.g., trypsin) for improved O-glycopeptide characterization with tandem mass spectrome
109 Here, we characterized the first "opine-glycopeptide" class of natural products termed rhabdopla
110 The digestion of O-glycoprotein yields O-glycopeptides cleaved at the N-terminal end of serine an
111 a MUC1-derived positional scanning synthetic glycopeptide combinatorial library (PS-SGCL) that vary i
112 ity and specificity of quantification of the glycopeptides compared to oxonium ion transitions which
113 ided by the structure of the 237 Fab:Tn-OTS8-glycopeptide complex, here we conducted a deep mutationa
114 ed two variant structures, revealed that the glycopeptide contained, in addition to carbohydrate moie
116 eutrophil isolation and immunoprecipitation, glycopeptides containing a single site each were generat
117 is extended mass range on various classes of glycopeptides containing phosphorylated, fucosylated, an
120 tes were identified from human serum and 149 glycopeptides derived from 129 glycoproteins with 157 N-
123 its binding characteristics to Tn-containing glycopeptides derived from the MGL ligands mucin 1 (MUC1
124 number of O-glycosites that are present in O-glycopeptides derived from the OpeRATOR digestion of fou
127 ation methods are necessary to capture the O-glycopeptide diversity present in OpeRATOR digestions.
128 quantification and identification of intact glycopeptides due to inefficient peptide backbone fragme
129 o sequentially isolate phosphopeptides and N-glycopeptides, enabling multiple PTM analyses of the sam
131 Most importantly, this highly efficient N-glycopeptide enrichment method enables the simultaneous
132 on, protein extraction, and phosphopeptide/N-glycopeptide enrichment to achieve sensitive analyses of
133 tryptic digest of 12 purified glycoproteins, glycopeptide enrichment, deglycosylation with PNGaseF, a
134 hniques, including multienzyme digestion and glycopeptide enrichment, to increase the repertoire of g
137 l enrichment recovery (90.8% and 109.5%) for glycopeptides enrichment, indicating a great potential f
140 f mouse tumor cells that bear its cognate Tn-glycopeptide epitope in podoplanin, also called OTS8.
141 that a CD4(+) T cell repertoire recognizes a glycopeptide epitope on gp120 presented by MHCII pathway
142 t high-affinity binding toward Tn-containing glycopeptides, especially at low probing concentrations.
143 y-based method called extraction of O-linked glycopeptides (EXoO) that enables large-scale mapping of
144 rminants to predict divergent members of the glycopeptide family of antibiotics that are likely to po
148 ptideGraphMS detected more than 500 unique N-glycopeptides from AXL, triple the number found by a dat
150 d protein chips showed the ability to enrich glycopeptides from complex mixtures with subsequent MALD
156 iated carbohydrate antigen (TACA)-containing glycopeptides from the tandem repeat (TR) sequence of MU
159 l methods for large-scale analyses of intact glycopeptides has limited our abilities both to address
160 nt and mass spectrometric analysis of intact glycopeptides have produced large-scale glycoproteomics
161 provide data sets containing all classes of glycopeptides (high mannose, hybrid, and complex) measur
162 lude that the current software solutions for glycopeptide identification also require further improve
163 tion can significantly improve confidence of glycopeptide identification and structural resolution by
165 accurate, thus providing a solid support for glycopeptide identification in complex samples based on
167 ization efficiency and microheterogeneity of glycopeptides identifying glycosylation sites is a chall
168 aracterizing glycans, glycosites, and intact glycopeptides (IGPs) derived from N-linked glycoproteins
170 a new vaccine platform for administration of glycopeptide immunogens for focusing immune responses to
172 glycan and peptide composition of just one N-glycopeptide in the graph was sufficient to identify the
175 3) compare the concentrations of these Abeta glycopeptides in CSF from 20 AD patients and 20 healthy
177 ure of immunopurified and desialylated Abeta glycopeptides in human CSF and to (2) establish a LC-MS/
178 lly alter the MS(2) fragmentation pattern of glycopeptides in negative mode and the characteristic fe
180 h the protein and the polysaccharide creates glycopeptides in the endosome of antigen-presenting cell
182 e relative abundances of the most common 159 glycopeptides in the plasma of 97 healthy volunteers.
184 N-glycan types of structures linked on each glycopeptide, including high-mannose/hybrid, biantennary
187 all permeability and is complementary to the glycopeptide inhibition of cell wall synthesis, was foun
188 ides) with 2-fold and 10-fold superior total glycopeptide intensity compared to non-one-pot method (9
189 om immunization with a KLH conjugate of this glycopeptide into rabbits showed high titer antibodies b
191 For presentation, the peptide portion of the glycopeptide is bound to MHCII, allowing the covalently
192 al infusion concentration of 5 mg.mL(-1) all glycopeptide is dimerized whilst at 19 microg.mL(-1) (a
195 laser pulses, efficient photodissociation of glycopeptides is achieved with production of multiple se
196 d on our discovery that the fragmentation of glycopeptides is glycan-structure dependent and glycans
197 ing derivatized polysaccharides, macrocyclic glycopeptides, iso-butylmercaptoquinine, isopropyl macro
198 Herein, we report that the separation of glycopeptide isomers on porous graphitic carbon (PGC)-LC
201 nt identification of these glycoforms at the glycopeptide level by mass spectrometry (MS) requires a
202 se assignment of sialylation linkages at the glycopeptide level is of importance in bottom-up glycopr
203 glycoproteins that can be quantitated to the glycopeptide level makes this method especially suitable
205 or antibody fused to chemically synthesized glycopeptide ligands that are agonists of the cation-ind
208 ed a nonhuman primate (NHP) study using a V3 glycopeptide minimal immunogen that was structurally opt
210 d complex-type N-glycans in the context of N-glycopeptides, N-glycoproteins, and intact antibodies.
212 We report here on supramolecular sulfated glycopeptide nanostructures, which display a trisulfated
213 a strategy for the permethylation of intact glycopeptides, obtained via controlled protease digest,
214 superior performance in identifying intact O-glycopeptides of the human erythropoietin with a total o
215 lows for the characterization of phospho- or glycopeptides only and enables additional analysis of to
218 intensity compared to non-one-pot method (9 glycopeptides) or without enrichment (6 glycopeptides),
219 orm separation for both released glycans and glycopeptides over that reported for chromatography mode
220 ) cell wall is an essential extracytoplasmic glycopeptide polymer that safeguards bacteria against os
223 he pretreatment of low-abundance glycans and glycopeptides prior to mass spectrometric (MS) analysis.
224 s more than 2,000-fold compared to current O-glycopeptide processing software, while defining O-glyco
225 automated quantitative analysis of the HR O-glycopeptide profiles with sequential deglycosylation to
226 eterogeneity can be captured via large-scale glycopeptide profiling methods enabled by activated ion
227 ative mass spectrometry, mass photometry and glycopeptide profiling revealed significant molecular co
228 f immune suppression, render these unnatural glycopeptides promising candidates for designing alterna
229 pattern was supported by examination of the glycopeptides, providing additional information about th
236 indings permitted the isomeric separation of glycopeptides resulting from highly specific enzymatic d
237 examine the gas-phase structures of a set of glycopeptides resulting from proteolytic digestion of th
241 d for the prediction of retention times of N-glycopeptides separated by reversed-phase high performan
242 identified and manually validated by de novo glycopeptide sequencing, of which 514 were sulfated at t
243 re, we present the first study revealing AFP glycopeptide signatures of individual HCC patients, comp
244 urther survival analysis reveals that intact glycopeptide signatures of mesenchymal subtype are assoc
246 It allows postacquisition extraction of glycopeptide-specific fragment-ion chromatograms to be a
247 origins of its unique N-terminal long-range glycopeptide specificity, which is the opposite of GalNA
249 ation to score and annotate individual MS/MS glycopeptide spectrum in different fragmentation modes.
250 mics data resulted in annotation of 80% more glycopeptide spectrum matches (glycoPSMs) than previousl
251 mic approach described, using double-labeled glycopeptide standards, will undoubtedly facilitate futu
252 ing four human OGA structures complexed with glycopeptide substrates containing a single O-GlcNAc mod
253 of OGA in complex with each of four distinct glycopeptide substrates that contain a single O-GlcNAc m
254 ated that GalNAc-T12 selects for peptide and glycopeptide substrates through unique interactions with
257 we have established a dimeric tyrosine-rich glycopeptide system for probing the corresponding hydrog
258 -selective alteration including polyketides, glycopeptides, terpenoids, macrolides, alkaloids, carboh
259 the OpeRATOR digestion of fully sialylated O-glycopeptides that are mass tagged to identify the sialy
260 de enrichment, to increase the repertoire of glycopeptides that can be generated from serum glycoprot
261 S analysis) to identify a number of putative glycopeptides that carried a variety of glycoform substi
262 ed for the glycoforms of individual N-linked glycopeptides, the deglycosylated peptides, and the rele
263 matography (IMAC), followed by enrichment of glycopeptides through mixed anion exchange (MAX) method,
265 2-stage exchange procedure for PJI, adding a glycopeptide to the cement spacer reduces the rate of po
267 study on the implications of complexation on glycopeptide transit in humans, antibiotic bioavailabili
268 s able to distinguish isomeric N-glycans and glycopeptides using both intact IMS and fragment-based I
270 red the enrichment of intact N- and O-linked glycopeptides using other chromatography methods and fou
271 peptide conjugation and release of O-GalNAc glycopeptides using the OpeRATOR protease, (5) liquid ch
272 ably distinguish between the N- and O-linked glycopeptides using the spectral features of the oxonium
273 its) used for modeling were measured for 602 glycopeptides versus 123 of their deglycosylated analogu
274 ociation spectra, O-Pair Search identifies O-glycopeptides via an ion-indexed open modification searc
276 ersion of homoserine to aspartic acid in the glycopeptide was successfully accomplished by late stage
277 hod for simultaneous analysis of IgG and IgA glycopeptides was developed and applied on a serum sampl
278 ive and comprehensive enrichment of N-linked glycopeptides was developed to facilitate detection of m
280 prehensive structural isomeric separation of glycopeptides was observed by high-resolution MS and con
281 approach for measuring arginine-GlcNAcylated glycopeptides, we assessed the global profile of arginin
282 tructures and Tyr-10 attachment sites of the glycopeptides, we did not observe any quantitative diffe
285 d of database for data mining, 1380 unique N-glycopeptides were identified and manually validated by
288 facilitating the analysis of these charged O-glycopeptides, which are often important in biological p
289 re used for the identification of the intact glycopeptides, while the quantitative comparison of site
290 proteoglycan core proteins by identifying CS-glycopeptides with a combination of biochemical enrichme
293 harides at Tyr(4) and Tyr(4') shows that the glycopeptides with either alpha- or beta-anomers exhibit
296 emonstrated that the method is selective for glycopeptides with O-GalNAc and can distinguish between
297 d retention time differences were actually N-glycopeptides with the same peptide backbone but differe
299 thod and confidence in the identification of glycopeptides with the Tn antigen by mass spectrometry.
300 assay has high purification specificity (20 glycopeptides) with 2-fold and 10-fold superior total gl