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1 ane segments, S1-S4, forming an antiparallel helical bundle.
2 ee anti-parallel alpha-helices arranged in a helical bundle.
3 endence of the recovery of the transmembrane helical bundle.
4 brane helix TM1a away from the transmembrane helical bundle.
5 tructural or dynamic perturbations through a helical bundle.
6 stranded beta-sheet, and a second five alpha-helical bundle.
7 coiled-coil tower domain to create a triple-helical bundle.
8 ar to the well studied Escherichia coli four-helical bundle.
9 eral Val and Leu residues in this tetrameric helical bundle.
10 ound and bind in different groves of the MIT helical bundle.
11 al tail, rather than being inserted into the helical bundle.
12 assemble into a proton-conducting tetrameric helical bundle.
13 orientation for the N-terminal six-TM domain helical bundle.
14 a Vps9 domain stabilized by an indispensable helical bundle.
15 complement factor 5a (C5a), a 74-amino acid helical bundle.
16 sed in maquette construction is a four-alpha-helical bundle.
17 identify the most plausible model of the TM helical bundle.
18 amphipathic helices, A-G, creating a unique helical bundle.
19 ith the identical helix from the second four-helical bundle.
20 inds to a remote allosteric site outside the helical bundle.
21 the long shared helix doubles back onto the helical bundle.
22 H3 of Cenp-K to create a compact three alpha-helical bundle.
23 GPCR) ligand located entirely outside of the helical bundle.
24 ses five linear repeats of an unusual triple helical bundle.
25 ization helices and the nearby actin-binding helical bundle.
26 e in complex native systems containing alpha-helical bundles.
27 metal ion exchange into proteins, especially helical bundles.
28 ants for the special case of homo-oligomeric helical bundles.
29 s of the talin rod include a series of alpha-helical bundles.
30 organizes FtsZ protofilaments into striking helical bundles.
31 -body movements in two sets of transmembrane helical bundles.
32 formation, although they occur rarely in TM helical bundles.
33 her tethering complexes, is constructed from helical bundles.
34 multiple 15mers together, they might fold as helical bundles.
35 nsists of a central beta-sheet and two alpha-helical bundles.
36 r membrane proteins containing transmembrane helical bundles.
37 Es from opposite membranes into stable alpha-helical bundles.
38 ormation for membrane proteins consisting of helical bundles.
39 with four helical domains organized into two helical bundles.
40 curving protein FzlA to promote formation of helical bundles.
41 dipeptides, cyclic peptides, and lock-washer helical bundles.
42 ise from unzipping, as well as unwinding, of helical bundles.
43 d molecule of a complex architecture rich in helical bundles.
44 n through the formation of cytoplasmic alpha-helical bundles.
45 a multi-domain protein with an N-terminal 4 helical bundle (4HB) and a pseudokinase domain (PsK) con
46 ed from two separate fragments consisting of helical bundles A and B and C, D, E, F, and G via a spli
47 cturally, DAXX is modular with an N-terminal helical bundle, a docking site for many DAXX interactors
49 explicit lipid bilayer and of its C-terminal helical bundle alone in aqueous solvent were performed.
51 ng into three distinct regions: a five alpha-helical bundle, an eight-stranded beta-sheet, and a seco
52 reveals two distinct domains: an N-terminal helical bundle and a C-terminal cyclophilin beta-barrel,
53 ection giving rise to a short distorted four helical bundle and a C-terminal helical structure wedged
54 13) entry domain is composed of a C-terminal helical bundle and a dynamic N-terminal region containin
57 6) at positions 94, 102, 204, and 341 in the helical bundle and first, second, and third extracellula
58 r, which for the first time includes refined helical bundle and loop regions and reflects a peptide-b
59 acement that is largest perpendicular to the helical bundle and not along the direction of apparent m
60 rn and functional studies do not support the helical bundle and second-gate hypothesis but correlate
61 cytoplasmic half of the S1-S4 transmembrane helical bundle and shifts open-closed channel equilibriu
62 at the allosteric coupling between the inner helical bundle and the selectivity filter might rely on
63 y contribute to the binding of this fourfold helical bundle and this evolutionary requirement may tra
64 Natural alpha-helical assemblies, such as helical bundles and coiled coils, consist of multiple ri
66 olecular dynamics simulations, tends to form helical bundles and crosses based on its 8-4-2-2 hydroph
69 served site at the interface between the two helical bundles and restraining their relative position
70 alanine core residues fold into stable alpha-helical bundles and that these self-sort from similar pe
71 tains both a unique interdomain insertion (4-helical bundle) and a C-terminal extension (3-helical bu
72 elical bundle) and a C-terminal extension (3-helical bundle) and it packs as a tetramer in the asymme
74 leotide MRS2500 (orthosteric, contacting the helical bundle) and urea BPTU (allosteric, on the extern
75 near the water-filled central cavity of the helical bundle, and (3) influences the dynamics and magn
77 r complex, SNARE proteins which can form a 4-helical bundle, and the SNARE disassembly chaperones Sec
78 olved structures of transmembrane (TM) alpha-helical bundles, and we use this contact potential to in
79 ure that interactions within the tetra-alpha-helical bundle are such that only the heterotetramer is
80 These results suggest that some loops in helical bundles are stabilized by short-range interactio
81 ns, four-helix bundles, or membrane-spanning helical bundles, are important to the structural organiz
82 t uniaxial rotational diffusion of the M2TMP helical bundle around the membrane normal is characteriz
83 ow that the C terminus consists of two alpha-helical bundles arranged in tandem, and we identify a hi
85 dicted that STAND NTPases use the C-terminal helical bundle as a "lever" to transmit the conformation
87 s are located in the hydrophobic core of the helical bundle as characterized by various biophysical t
89 loops) assemble in detergent into four-alpha-helical bundles as observed by analytical ultracentrifug
91 inal helical extensions that form an unusual helical bundle at its dimer interface with some resembla
92 oiled-coil motif, predictably forming a four-helical bundle at the center of the protein and emulatin
95 flexible globular ensemble to a rather rigid helical bundle, blocking access to the nuclear localizat
98 plex, odd-stranded braids, but can also form helical bundles by undergoing inversions of chirality.
100 PfRH5 adopts a novel fold in which two three-helical bundles come together in a kite-like architectur
101 fusion is driven by the formation of a four-helical bundle composed of soluble N-ethylmaleimide sens
102 mbrane fusion requires the formation of four-helical bundles comprised of the SNARE proteins syntaxin
103 sistant form of gp41 akin to the postfusion, helical bundle conformation and appear to lack specific
104 t this region is helical and adopts an alpha-helical bundle conformation similar to that observed in
105 ned to prevent Env from folding into a final helical-bundle conformation abolished virus-cell fusion
106 at can adopt two very different homotrimeric helical bundle conformations-one short (~66 angstrom hei
107 rchitecture, involving three-helical and two-helical bundles connected by a compact five-helical junc
110 rthermore, the non-Leucine zipper N-terminal helical bundle contains several new elements for protein
111 y, talin's effects on Vh structure establish helical bundle conversion as a signalling mechanism by w
113 of talin VBSs activate vinculin by provoking helical bundle conversion of the Vh domain, which displa
114 ows the cooperative relaxation of the native helical bundle core that is monitored by both solvated (
115 to the kinetics of other members of the four-helical bundle cytokine family, erythropoietin folding a
117 udies of erythropoietin, a glycosylated four-helical bundle cytokine responsible for the regulation o
118 Interleukin (IL)-2 is a type I four-alpha-helical bundle cytokine that plays vital roles in antige
120 are uniquely arranged in a left-handed alpha-helical bundle, directly interacting with the amino-term
121 cules that self-assemble into highly ordered helical bundles displaying hexagonal close packing.
122 ng motif, which together with the downstream helical bundle domain (residues 135-230) forms an early
125 hway in which unfolding of Zuo1's C-terminal helical bundle domain results in ribosome dissociation f
127 domain that may be similar to the N-terminal helical bundle domains of apoA-I and apoE but that apoA-
130 ntricate pattern of interactions within this helical bundle ensures the stable assembly of the head s
131 that low-pH induced unfolding of the RAP-D3 helical bundle facilitates dissociation of RAP-receptor
132 complexity of knot-like proteins within the helical bundle family comprises a completely new class w
133 annel-like region at the center of the S1-S4 helical bundle fills rapidly with water, reminiscent of
135 e FBXL5 N terminus, a hemerythrin-like alpha-helical bundle fold not previously observed in mammalian
136 nst SpA(KKAA) that, by binding to the triple-helical bundle fold of its immunoglobulin binding domain
137 lant pathogen Pseudomonas syringae, adopts a helical bundle fold of low stability (DeltaG(F-->U) = 2
138 ain of the homeodomain-like superfamily of 3-helical-bundle-fold proteins, (b) a central region with
140 fusion-mediating glycoproteins couple alpha-helical bundle formation to membrane merger, but have di
141 s a dimer with a characteristic central four-helical bundle formed by association of the two longest
142 t elucidated the structure of a tetrapeptide helical bundle formed by interaction of the cytosolic do
145 sfully validated on a set of non-coiled-coil helical bundles, frequent in channels and transporter pr
147 , namely the direct recognition of the three-helical bundle H(abc) domain of the mouse SNARE Vti1b by
148 core polymerase, while the C-terminal, three-helical bundle has a strongly positive patch that could
150 onstrate this we first modified the designed helical bundle hemoprotein H4, creating a highly charged
151 sequence from a structured diheme-four-alpha-helical bundle (HP1), with 24 residues of a membrane-spa
152 c site outside the seven transmembrane (7TM) helical bundle in a position between TM6 and TM7 extendi
153 he maize nsLTP, implying the importance of a helical bundle in accommodating the non-specific binding
155 that bind a diiron site within a four alpha-helical bundle in general and ferritins in particular.
157 lasmic end of helix 4 lies outside the inner helical bundle in the exofacial configuration of Glut1.
159 it interactions maintain the gp41 ectodomain helical bundles in a "spring-loaded" conformation distin
160 cture, the large entropic cost of organizing helical bundles in the absence of the constraining bilay
161 e peptides are thought to form transmembrane helical bundles in which the more hydrophilic residues l
162 ined fatty acid bound down the center of the helical bundle, in agreement with the location of the fa
164 merization occurs through the formation of a helical bundle, including a coiled-coil interaction moti
165 cture of the Fs peptide is predicted to be a helical bundle instead of a single helix; and (iii) the
166 generates near-native models of large alpha-helical bundles, interlocking beta sandwiches, and inter
168 magnetic resonance indicate that the overall helical bundle is formed from two tightly interacting pa
169 system for the study of coiled-coil 4-alpha-helical bundles, is characterized by a remarkable struct
172 thesized that lipid-free apoA-IV exists in a helical bundle, like other apolipoprotein family members
174 onditions, the C-terminus is indeed an alpha-helical bundle, located near the five-fold symmetry axis
176 nt with theoretical values calculated from a helical bundle model but not from a helical hairpin.
178 pothesis that pentamers containing a central helical bundle, observed in different nonenveloped virus
179 antiparallel beta-sheet, followed by a three-helical bundle of alpha-helices, and then a C-terminal b
182 f NLRP3 requires (i) the death effector four-helical bundle of MLKL, (ii) oligomerization and associa
183 ucture of the tetramerization site, a triple helical bundle of partial domain helices, show that muta
186 d with the detailed structural analyses, the helical bundle of the CB(1) receptor appears to be fully
187 distributed over the surface and within the helical bundle of the cholecystokinin receptor to the am
188 ine N-terminal region into the transmembrane helical bundle of the receptor concurrent with receptor
189 e III PKS architecture along with an unusual helical bundle of unknown function that appears to exten
190 vel conformational changes in the N-terminal helical bundle of Vh1, which disrupt its intramolecular
191 tes were identified within the transmembrane helical bundles of both the alpha1 (labeled residues alp
195 ll with the size found in solution for alpha-helical bundles of peptides with a similar amino acid se
196 stability and transition kinetics of the 13 helical bundles of talin are utilized in the diverse tal
197 tions starting from tetrameric transmembrane helical bundles of these two peptides, as well as their
199 s, reveals that Vps54 has a continuous alpha-helical bundle organization similar to that of other mul
200 mune responses further suggested that packed helical bundles partially inserted into the lipid bilaye
201 Its C-terminal rod domain, which contains 13 helical bundles, plays important roles in mechanosensing
203 lays an outer stabilizing role for the inner helical bundle predicted to form the exofacial substrate
204 of talin and alpha-actinin are buried within helical bundles present in their central rod domains.
205 n and allosteric regulation in a tetra-alpha-helical bundle protein composed of two identical di-heli
208 on of the talin rod, and show that the three helical bundles R1-R3 in this region unfold in three dis
209 ctural characterization of the talin rod: 13 helical bundles (R1-R13) organized into a compact cluste
210 nd supports external contact dimerization of helical bundles, rather than domain-swapped dimerization
211 achments, it is likely that the tetrapeptide helical bundle reflects the lowest energy state, such as
212 xtreme plasticity in the assembly of 4-alpha-helical bundles reflects the capacity of the Rop sequenc
213 conformational changes in a C-terminal four-helical bundle region of ExoU as it interacts with lipid
216 biophysical analyses of the C-terminal alpha-helical bundle reveal critical roles for the conserved r
217 ted a red copper protein site within a three helical bundle scaffold which we later revisited and det
220 The rDer f 21 protein consists of a three helical bundle, similar to available structures of group
221 ment trimer, has a central coiled-coil alpha-helical bundle, similar to the fusion proteins of many e
223 exposed HR1 grooves, lack of binding to hexa-helical bundle-specific NC-1 mAb, and inhibition of viru
228 The model describes how primordial alpha-helical bundles stabilized membranes, how these were dec
230 lices (helices A1, B1, and C1) form a triple helical bundle structural domain that is similar, but no
234 es revealed that SYCE3 adopts a dimeric four-helical bundle structure that acts as the building block
235 ptad repeat to induce an extended MPER alpha-helical bundle structure yielded an antigenicity profile
236 helical conformations (as in the postfusion helical bundle structure) and beta-turn conformations (a
237 nformational changes in Vh, creating a novel helical bundle structure, and this alteration actively d
238 by disulfide and oxime linkages to mimic the helical bundle structures commonly found in proteins.
239 Thus, SMN tetramers do not form symmetric helical bundles such as those found in glycine zipper tr
241 Specifically, we investigated homooligomeric helical bundle systems consisting of synthetic alpha-hel
242 ble junction between helix C' and the triple helical bundle that allows multiple orientations between
243 editing applications, contains an ancestral helical bundle that blocks AcrVA4 binding and allows it
244 e fusion by forming a four-stranded parallel helical bundle that brings the membranes into close prox
245 ur elongated S6 segments form a right-handed helical bundle that closes the pore at the cytoplasmic b
246 f four outer helices that surround the inner helical bundle that comprises the aqueous substrate-bind
247 y its D3 domain, a relatively unstable three-helical bundle that denatures at pH <6.2 due to protonat
248 s were found in the motions of the inner TM2 helical bundle that directly modulate the size of the ce
249 e t-SNARE and controls the rate at which the helical bundle that forms the SNAREpin can zip up to dri
250 peratively generate a heterotetrameric alpha-helical bundle that functions in conjunction with its ne
253 sion conformation indicates a trimeric alpha-helical bundle that is highly similar to those of Ebola
254 The novel C-terminal domain forms an alpha-helical bundle that is positioned perpendicular to the t
255 are produced and are organized in a vertical helical bundle that is projected toward the particle sur
256 segment and show that it forms a tetrameric, helical bundle that is structurally "conditioned" for in
257 lized SNARE proteins zipper up into an alpha-helical bundle that pulls the two membranes tightly toge
258 port the design of a membrane-spanning, four-helical bundle that transports first-row transition meta
259 mino terminal GTPase domain and two extended helical bundles that are connected by flexible regions.
262 that leucine-967 is buried within the alpha-helical bundle through predominantly hydrophobic interac
263 ng residues (70 amino acids total) of the TM helical bundle (TM1-7) of the M3R to systematic alanine
265 ng from complete inversion of the N-terminal helical bundle to mixed topology and then to completely
267 es that assemble into amphiphilic (AP) alpha-helical bundles to reproduce key structure characteristi
268 , prolactin adopts an "up-up-down-down" four-helical bundle topology and resembles other members of t
269 has been proposed that the assembly of this helical bundle transduces force through the entire bilay
270 IL-21), a potent immunomodulatory four-alpha-helical-bundle type I cytokine, is produced by NKT and C
271 ic residues that would destabilize the alpha-helical bundle under conditions where the side chains ar
272 e of integral membrane proteins built from a helical bundle (up to seven transmembrane segments).
273 ition from an unstructured monomer to a four-helical bundle upon phosphorylation by the enzyme cyclic
274 two membrane protein architectures (an alpha-helical bundle versus a beta-barrel) and two different d
276 tended apolar interface to form a four-alpha-helical bundle, where two of the alpha-helices are contr
277 tifying the ligand binding pocket within the helical bundle, whereas the role of the extracellular lo
278 HR1-54Q reveals a trimeric, coiled-coil six-helical bundle, which probably represents a postfusion f
279 gather behind the cell body and form a close helical bundle, which propels the cell forward during a
280 ecognizes CD81 through a dynamic loop on the helical bundle, which was shown by nuclear magnetic reso
281 es (MIT) domains comprising asymmetric three-helical bundles, which interact with helical MIT-interac
282 erminal interactions and (2) the surrounding helical bundle whose contributions to protein stability
284 Crystal structures have revealed a compact helical bundle with a buried active site, which requires
287 (NMR) spectroscopy that the protein forms a helical bundle with a surprisingly polar lipid-facing su
288 tion phenomena and demonstrated a rigid four-helical bundle with relatively mobile interconnecting lo
289 whereas the KdpD TM domain comprises a four-helical bundle with shorter second and third helices.
291 -free apoA-IV does indeed exist as a complex helical bundle with the N and C termini in close proximi
292 g structure consists of a right handed alpha-helical bundle with the residues Ile659, Val663, Leu667,
293 the membrane-associated region forms a three-helical bundle with two cysteine residues located at pos
294 the predicted secondary structure of 4 alpha-helical bundles with an up-up-down-down topology, and tw
295 he relative orientation of the transmembrane helical bundles with respect to one another has been det
297 ated several strategies to stabilize minimal helical bundles, with the dimer motif as the initial foc
299 e of domain III at one end, and an elongated helical bundle within the portion corresponding to domai
300 o acid residues on the exterior of the alpha-helical bundle yields monodisperse macromolecules with p