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1 ted in the DNA major groove (the recognition helix).
2 spatial organization at the DNA recognition helix.
3 cur to allow formation of the U2-branch-site helix.
4 lly sequestering the canonical eIF4E-binding helix.
5 nterface straddle a conserved peripheral NBD helix.
6 ) cohort who underwent Exome + sequencing at Helix.
7 the corresponding value of the intact double-helix.
8 eroid sensitivity determinant in the alphaM1 helix.
9 ng C-terminal end of the pHLIP transmembrane helix.
10 in vitro enzymatic degradation of the triple helix.
11 r-leaflet, as a consequence of a rotated TM2 helix.
12 lter the exact positioning of the activation helix.
13 urret, selectivity filter loop, and the pore helix.
14 o subdomains and bisected by a long diagonal helix.
15 effect, at least in part, through the alphaB helix.
16 tion through the acquisition of the I2 alpha-helix.
17 ns through a single transmembrane (TM) alpha-helix.
18 rt trigger heme release by contacting Hb's F-helix.
19 2-16 actin filaments on the outer rim of the helix.
20 y rearrangement of the CcP heme-coordinating helix.
21 horizontally" grab the protruding MHC alpha2-helix.
22 We observe two dynamical modes for the helix.
23 s in the linker between cap helix 2 and pore helix 1, markedly reduced the inhibitory effect of IBMX.
27 use a conserved activation function-2 (AF-2) helix 12 mechanism for agonist-induced coactivator inter
28 ition 92, which is in the linker between cap helix 2 and pore helix 1, markedly reduced the inhibitor
29 Local unfolding of either betaB-betaD or helix 2 can generate an opening large enough for ligands
34 We show that deletion of the conserved alpha-helix 30 interferes with the integrity of the cell wall,
37 cle, conformational changes in transmembrane helix 6 (TM6) alter the glutathione-binding site and the
38 ment (ca. 6 to 14 angstrom) of transmembrane helix 6 (TM6) to a conformation which binds and activate
39 mains into close contact along transmembrane helix 6 and ultimately inducing conformational rearrange
42 oximately 10 angstrom shift of transmembrane helix 7 that exposes a large membrane-accessible cavity.
43 cluding an aberrantly flexible ribosomal RNA helix 74, resulting in at least three different blocks i
44 together in the maturation of ribosomal RNA helix 74, which is required to ensure proper constructio
45 to the membrane-embedded complex, including helix 8 burial in the inner leaflet, ordered lysine and
46 GPCR cargoes, must release their amphipathic helix 8 from the membrane to be recognized by the BBSome
48 a 'latch' that reaches the end of the bridge helix, a flexible element of the Pol II active site.
49 re biomimetic analogs of the collagen triple helix, a fold that is a hallmark of collagen-like sequen
51 hat KCNE3 tucks its single-membrane-spanning helix against KCNQ1, at a location that appears to lock
52 acting network involving Gln59 in the alpha1-helix, Ala352 in the beta6-alpha5 loop, and Thr355 in th
53 g studies suggested that the transient alpha-helix aligns multiple polar residues to interact with po
54 nteraction between the auto-inhibitory brace helix alpha6 and the four-helix bundle by stacking to Ph
57 ic information on dynamics for both an alpha-helix and beta-sheet site of GB1, the immunoglobulin bin
58 ein structure and the presence of both alpha-helix and beta-sheet was observed, with higher beta-shee
60 oportion of beta sheets, random coils, alpha-helix and beta-turns for all fractions of RB of both cul
61 onformationally disordered state to an alpha-helix and develops contacts with the C-terminal domain o
64 its target site by unwinding the DNA double helix and hybridizing a 20-nucleotide section of its ass
66 d highly dynamic with one four-residue alpha-helix and one three-residue antiparallel beta-sheet stab
67 he transiently forming interface, both the F-helix and receptor bridge are in motion, dynamically sam
68 CdiB pore is occluded by an N-terminal alpha-helix and the conserved extracellular loop 6; these two
69 regions through the SMARCB1 C-terminal alpha-helix and the SMARCA4/2 C-terminal SnAc/post-SnAc region
72 oprotein with an ectodomain, a transmembrane helix, and a short carboxyl-terminal tail, or as a solub
73 ses an extracellular region, a transmembrane helix, and two tandem intracellular catalytic domains re
75 tify the positively charged alpha1-extension helix as essential for RNF168-mediated ubiquitination of
76 proposed tentative paths of cotranslational helix assembly of several polytopic proteins were consis
77 ization, K552T and R553L mutations at distal helix B decrease calmodulin-binding and axonal enrichmen
78 he rigid-body coupling, with LptF's coupling helix being important in coordinating cavity collapse wi
81 ANSCRIPTION FACTOR (FIT), a basic helix-loop-helix (bHLH) transcription factor (TF), regulates root F
82 Here, we showed that the basic Helix-Loop-Helix (bHLH) transcription factor Cucumis sativus Irregu
84 e mutation, Mlkl(D139V), that alters the two-helix 'brace' that connects the killer four-helix bundle
85 t fraction of helix disruption, in which the helix breakage increases from 26% at pH 7.5 to 53% at pH
86 ches (e.g., repair and stabilize and glycine-helix breaking) yields well-behaved clade C-Env trimers
87 ding proteins, that bind the N-terminal four-helix bundle (4HB) "killer" domain and neighboring first
90 cate that the M8R mutation disrupts the four-helix bundle at the head-to-tail junction, leading to we
94 cally simple and highly conserved four-alpha-helix bundle protein that acts as an intracellular trans
97 elical structure to form an intermolecular 4-helix bundle with the E6AP AZUL, which is unique to this
99 n residing on synaptic vesicles (SVs), forms helix bundles with syntaxin-1 and SNAP25 for the SNARE a
102 xtending studies on the role of the H2 alpha-helix C terminus of PrP, we found that deletion of the h
103 ir at the groove (C55) and C-terminal alpha9 helix (C175) of BFL-1 operates as a redox switch to cont
106 e mitochondrial paralogs coiled-helix-coiled-helix (CHCHD) domain 2 (C2) and CHCHD10 (C10) were recen
107 tations in the mitochondrial paralogs coiled-helix-coiled-helix (CHCHD) domain 2 (C2) and CHCHD10 (C1
108 l monomers bound each other in a short-pitch helix complex in addition to other configurations, with
109 eviously-unseen compact fold, the helix-turn-helix conformation of pUL51 resembles the cellular endos
110 and simulations indicate that the helix-turn-helix conformation of the MPER-TMD is responsible for se
111 be collagen losing its original triple alpha-helix conformation, further confirming the diagenetic de
113 crystallinity along with the loss of double helix content was supported by size exclusion chromatogr
114 e of the UCS domain (by decreasing the alpha-helix content), leading to a significant change in its s
115 profiling, here we show that the Orc4 alpha-helix contributes to the DNA sequence-specificity of ori
117 In addition to outward movement of the B'-helix, DEER-constrained Rosetta structural models sugges
119 rmational change in which residues of the B'-helix displayed outward movement with respect to the sym
120 D27H/E28H causes a pH-dependent fraction of helix disruption, in which the helix breakage increases
122 positively charged cleft and a helix-hairpin-helix DNA-binding motif found in other DNA repair enzyme
123 s in Uaf30 that include an N-terminal winged helix domain and a disordered tethering domain as well a
125 rved aromatic residue in the extended winged-helix domain of TFEalpha interacts with promoter DNA to
126 Here, we truncated the C-terminal winged-helix-domain (WHD) of Mcm6 to slow down the loading reac
130 lternate structure with an elongated central helix, exposed splice donor residues, and an accessible
131 Recently, we revealed that basic helix-loop-helix factors, HECATEs (HECs), function as positive regu
132 ed Galalpha1-3Gal revealed the parallel beta-helix fold of the enzyme and the structural basis of its
133 yP regions within the PRD stay in a polyP II helix for most of the simulation, whereas occasional kin
134 ed after SARRAH silencing via RNA-DNA triple helix formation and cardiomyocytes lacking the triple he
135 mation and cardiomyocytes lacking the triple helix forming domain of Sarrah show an increase in apopt
138 elucidated, although a predicted helix-loop-helix (H-L-H) was suggested to form pores by virtue of i
139 logy to class A GPCRs, but the transmembrane helix H4 is shifted by more than 20 angstrom and the G-p
140 YaaA has a positively charged cleft and a helix-hairpin-helix DNA-binding motif found in other DNA
141 hin the aromatic oligomers, depending on the helix handedness and on the extent of electronic polariz
142 lication origins, mediated by the Orc4 alpha-helix, has co-evolved with the gain of ORC-Sir4-mediated
143 otein TraK, a predicted member of the Ribbon-Helix-Helix (RHH) family of DNA-binding proteins, to tra
144 g behavior stemming from an additional GXXXG helix-helix interaction motif created in the mutant hair
145 e potent inhibitors of helical extension and helix-helix interaction, which are removed in part by va
147 site tunnel, and an insert within the alpha3 helix helps to stabilize this energetically unfavorable
148 e this possibility using two randomly chosen helix-heterotetramers, showing that their mechanical pro
149 amphipathic structures: A classic horizontal helix (horine) and a novel vertical spiral structure (ve
151 ation loop from cracking and keep the alphaC helix in an active-like conformation, whereas phosphoryl
153 ed intrastrand disruption of collagen triple helix in pigmented AKU human cartilage, and in cartilage
154 ssible helix transition from alpha- to 3(10)-helix in S4 during the activation process is still unres
156 Small molecule-based modulation of a triple helix in the long non-coding RNA metastasis-associated l
157 rresponding to a predicted amphipathic alpha-helix in the prodomain N terminus adopt helical structur
158 ed contacts provided by residues in an alpha-helix inserted in the DNA major groove (the recognition
160 ch I of EF-Tu rapidly converts from an alpha-helix into a beta-hairpin and moves to interact with the
162 c module fibrillarin for the substrate-guide helix is dependent on the RNA sequence outside the methy
164 The double helix portion of the RNA triple helix is more similar to both the helical and base step
165 is structure demonstrates that an RNA triple helix is not limited in length to six consecutive base t
166 Here, we show that 4 bp of core-enclosing helix is required for telomerase to be active in vitro a
167 1C, and His52) rigidly arranged on one alpha-helix is responsible for chelating the first Cu(II) and
168 e alternative rotamer within the recognition helix itself as an important determinant of DNA specific
170 Through near-exhaustive sampling of loop-helix-loop elements, LUCS generates highly diverse geome
171 tiviral substructure through which its 18-nt helix-loop intimately contacts multiple EZH2 sites surro
172 present a computational design method, loop-helix-loop unit combinatorial sampling (LUCS), that mimi
173 otein (SSBP) cofactors and DNA-binding basic helix-loop-helix (bHLH) and GATA transcription factors.
175 -INDUCED TRANSCRIPTION FACTOR (FIT), a basic helix-loop-helix (bHLH) transcription factor (TF), regul
178 e yet to be elucidated, although a predicted helix-loop-helix (H-L-H) was suggested to form pores by
179 three closest homologs of ILR3 (i.e., basic-helix-loop-helix 34 [bHLH34], bHLH104, and bHLH115).
181 In both cases, the dimer is stabilized by a helix-loop-helix motif at the C terminus and interaction
182 increasing altitude is controlled by a basic/helix-loop-helix transcription factor (bHLH TF), MdbHLH3
183 PP2A substrates is MYC proto-oncogene basic helix-loop-helix transcription factor (MYC), whose overe
184 cribed to nuclear translocation of the basic helix-loop-helix transcription factor Transcription Fact
186 ERACTING FACTORS (PIFs) are a group of basic helix-loop-helix transcription factors that can physical
188 zebrafish ortholog of human HES4, is a basic helix-loop-helix-orange transcriptional repressor that r
189 iption factors including a central MYB-basic helix-loop-helix-WD40 complex containing WEREWOLF (WER),
191 disrupt a rigid IS6-alpha-interaction domain helix markedly reduced basal open probability despite in
193 larger, aromatic side chains in the ENaC M2 helix may contribute to the constitutive activity of the
195 The DsbD functional homolog CcdA is a six-TM-helix membrane protein that provides reducing equivalent
197 ses, the dimer is stabilized by a helix-loop-helix motif at the C terminus and interactions between t
198 s to functionally map the determinants of S4 helix motion during voltage-dependent transition from th
200 y of origins in S. cerevisiae and Orc4 alpha-helix mutations change genome-wide origin firing pattern
202 to the N130 GlcNAc and the N-terminal alpha-helix near the peptide-binding site while increasing fle
204 ere that the strongly amphipathic N-terminal helix of CPn0678 mediates binding to phospholipids in bo
205 GRK5 via ordering of the amphipathic alphaN-helix of GRK5 and allosteric disruption of kinase-RH dom
209 In the actin-bound structure, the first helix of the bundle dissociates and the remaining four h
211 pomyosin under the influence of a 64-residue helix of TnT located at the overlap of adjacent tropomyo
212 d that binding and release of the C-terminal helix of transducin is coupled to hydration changes as m
213 n complexes reveal a disruption in the alpha-helix of transmembrane segment 6 (TM6) not observed in f
215 rtholog of human HES4, is a basic helix-loop-helix-orange transcriptional repressor that regulates ne
217 global fold can be described at the level of helix orientations and relatively flexible loop conforma
218 space, in particular, on the distribution of helix orientations, for pseudoknots and loop-loop kissin
220 As revealed that the second internal loop of helix P3 in the transcriptional RNA usually contains an
222 sect cells, the transmembrane form of the 12-helix pore enables the passage of ions across the membra
230 ght-handed with a 1.3 mum pitch and 0.14 mum helix radius, which is consistent with the feature of a
232 press high levels of Cthrc1 (collagen triple helix repeat containing 1), and localize into the scar.
233 zed by expression of Cthrc1 (collagen triple helix repeat containing 1), emerges in fibrotic lungs an
235 s that, in the absence of PES, the GluN2B M1 helix residue W559 interacts with the M4 helix residue M
238 This variant causes substitution F302L, in helix S4 of the K(V) 1.2 voltage-sensing domain (VSD).
241 MA) polymer-OP conjugate (PDOP) adopts alpha-helix secondary structure and induces robust immunogenic
244 nal assay observing the conformation of this helix showed that the F148A mutant is unresponsive to th
245 ammer, which locally alters the twist of the helix, significantly increases copper-catalyzed nitrite
247 predominantly determined by the motif type, helix size, and loop size, indicating a strong topologic
248 boswitch is largely unfolded, lacking the PK helix so that translation can be initiated at the riboso
251 small-molecule corrector Lumacaftor exerts a helix stabilization effect not only on the E217G mutant
253 ed ferritin at the interface between the two-helix subunits and proximal to the ferroxidase center.
255 ad is a pH sensor in the center of the M2 TM helix that activates the channel in response to the low
256 Intriguingly, mutations in the activation helix that are frequently found in cancers do not dimini
257 protein sequence features in the recognition helix that could be used to predict the specificity of o
260 The critical Set1 RxxxRR motif adopts a helix that mediates bridging contacts between the nucleo
261 beta6-alpha5 loop, and Thr355 in the alpha5-helix, these conformational changes might lead to the de
262 anisation, composed of one membrane-spanning helix (TM) and another that penetrates the inner leaflet
263 aptotagmin-1 contains a single transmembrane helix (TM) and two tandem C2 domains (C2A and C2B).
264 to co-translationally insert a transmembrane helix (TMH) of many multi-pass integral membrane protein
267 on of the fingers subdomain-especially the O helix-to engage the primer-template and dNTP triphosphat
268 conducted an in-depth analysis of the alpha-helix-to-beta-strand and beta-strand-to-alpha-helix tran
270 rates is MYC proto-oncogene basic helix-loop-helix transcription factor (MYC), whose overexpression i
271 ox C1 (FOXC1) gene encodes a forkhead/winged helix transcription factor involved in embryonic develop
272 uclear translocation of the basic helix-loop-helix transcription factor Transcription Factor E3 (TFE3
274 CTORS (PIFs) are a group of basic helix-loop-helix transcription factors that can physically interact
276 obic plug upon voltage changes, the possible helix transition from alpha- to 3(10)-helix in S4 during
278 elix-to-beta-strand and beta-strand-to-alpha-helix transitions and domain motions displayed by the es
279 cryo-electron microscopy structure of the 16-helix transmembrane pore closely matches the design mode
280 el (ICab) immunized against a bacterial 14TM helix transporter, NorC, from Staphylococcus aureus We i
281 (IMCT) of both muscles, a decrease in alpha- helix, turn and unordered structures was complemented wi
283 adopts a previously-unseen compact fold, the helix-turn-helix conformation of pUL51 resembles the cel
284 ental data and simulations indicate that the helix-turn-helix conformation of the MPER-TMD is respons
288 teins, the H-segment of the leader peptidase helix used in the von Heijne and White biological scale
290 hese findings indicate that an intact alphaB helix/VSD interface is required for effective coupling o
291 ors including a central MYB-basic helix-loop-helix-WD40 complex containing WEREWOLF (WER), GLABRA3 (G
292 ous coil-to-helix transition in the bridging helix, which connects the ankyrin repeat motifs to the c
293 econdary structure change of the pore-lining helix, which contains a pai-helical segment in the close
294 -induced thermal stabilization of the triple helix, which correlated with decreased in vitro degradat
296 ues in proximity to the H2A alpha1-extension helix, which plays an important role in the DDR pathway.
297 tic information is encoded in the DNA double helix, which, in its physiological milieu, is characteri
298 ion connecting the head to the transmembrane helix while still not disrupting the ACE2 homodimer or A
299 s pre-structured and adopts a polyproline II helix, while segment 2 of ArkA (C-terminal) adopts a 310