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1 ent and is specific for the nicked strand of heteroduplex DNA.
2 siding in the major and minor grooves of the heteroduplex DNA.
3 ocess that is important for the formation of heteroduplex DNA.
4 n close proximity to, the unpaired base of a heteroduplex DNA.
5 ch frequently escape mismatch repair when in heteroduplex DNA.
6 hat observed with otherwise identical nicked heteroduplex DNA.
7 of 0.7 microm in the absence or presence of heteroduplex DNA.
8 eleting mismatch repair proteins to identify heteroduplex DNA.
9 S forms a tetramer on this single site-sized heteroduplex DNA.
10 tein that displays increased specificity for heteroduplex DNA.
11 ch as single-stranded (ss) DNA, DNA ends and heteroduplex DNA.
12 of HR intermediates, possibly by stabilizing heteroduplex DNA.
13 the intervening region shows no evidence of heteroduplex DNA.
14 rossover recombinants, both of which contain heteroduplex DNA.
15 two Holliday junctions flanking a region of heteroduplex DNA.
16 ntermediates but failed to detect associated heteroduplex DNA.
17 a pairing protein that cannot form extensive heteroduplex DNA.
18 branch migration leading to the formation of heteroduplex DNA.
19 c conversion results from mismatch repair of heteroduplex DNA.
20 f Holliday junctions, a process that extends heteroduplex DNA.
21 of Escherichia coli MutS with homoduplex and heteroduplex DNAs.
22 formation of unpaired or mispaired bases in heteroduplex DNAs.
23 iae RAD54 gene functions in the formation of heteroduplex DNA, a key intermediate in recombination pr
24 n mismatch repair functions fail to act upon heteroduplex DNA-aberrant segregation frequencies at the
27 rkers spanning the DSB should be included in heteroduplex DNA and be detectable as non-Mendelian segr
28 e 3' invading strand to be incorporated into heteroduplex DNA and to be extended by DNA polymerases.
29 which, MutS, recognizes mismatched bases in heteroduplex DNA and, along with MutL, blocks strand exc
30 g, promote stabilization of the newly formed heteroduplex DNA, and contribute to the directionality o
31 tial fraction of crossover products retained heteroduplex DNA, and some provided evidence of MSH2-ind
32 ir machinery; more than 85% of mismatches in heteroduplex DNA are corrected in favor of the resident,
34 ous conversion tracts, as well as persistent heteroduplex DNA at crossover sites in mature spermatozo
36 MutS,L inhibit the formation of full-length heteroduplex DNA between M13-fd DNA in the presence of R
37 ch close to the end of the fragment; rather, heteroduplex DNA between the fragment and the chromosome
40 nt proteins were assayed for ATP hydrolysis, heteroduplex DNA binding, heterodimer MutS formation, an
41 duced the affinity of the mutant protein for heteroduplex DNA by roughly 3 orders of magnitude, but h
44 ion between divergent sequences by rejecting heteroduplex DNA containing excessive nucleotide mismatc
45 ismatch binding activity with affinities for heteroduplex DNAs containing either an insertion/deletio
46 MutS DNA mismatch repair protein recognizes heteroduplex DNAs containing mispaired or unpaired bases
47 repair protein that recognizes and binds to heteroduplex DNAs containing mispaired or unpaired bases
48 The MutS DNA mismatch protein recognizes heteroduplex DNAs containing mispaired or unpaired bases
50 tes that the lifetime of MutS complexes with heteroduplex DNA depends on the nature of the nucleotide
51 ection of large DNA mismatches that occur in heteroduplex DNA during meiotic recombination at the HIS
52 tion, or to limit the extent of formation of heteroduplex DNA during recombination between divergent
54 phase of DNA strand exchange by stimulating heteroduplex DNA extension of established joint molecule
56 hought to promote dissociation of RAD51 from heteroduplex DNA following strand exchange during homolo
57 e tract length and directionality, including heteroduplex DNA formation, transcription, replication a
62 near duplex DNA, we found that the length of heteroduplex DNA formed by hRad51 was limited to approxi
64 nalysis indicates that the extent of meiotic heteroduplex DNA formed in a MMR-defective strain is 65%
65 (OsPERT) was primarily developed to prepare heteroduplex DNA from alkali-denatured high molecular we
66 the repair of 1-nucleotide loop mispairs in heteroduplex DNA generated during meiotic recombination.
67 ed in the rad51Delta mutant, indicating that heteroduplex DNA has an altered structure, or is process
68 plex between human MutSalpha, MutLalpha, and heteroduplex DNA has been demonstrated by surface plasmo
70 ction of Escherichia coli MutS and MutL with heteroduplex DNA has been visualized by electron microsc
71 xamined the binding of Taq MutS protein to a heteroduplex DNA having a single unpaired thymidine resi
72 the mechanism of gene targeting, we examined heteroduplex DNA (hDNA) formation during targeting of tw
74 These models differ in the arrangement of heteroduplex DNA (hDNA) in recombination intermediates.
75 t from gap repair or from mismatch repair of heteroduplex DNA (hDNA) in recombination intermediates.
76 eading to G-G or C-C mispairs in presumptive heteroduplex DNA (hDNA) intermediates displayed a partic
78 Recombination intermediates with a maximum heteroduplex DNA (hDNA) region of 697 bp contained a cen
79 single-strand annealing, yielding predicted heteroduplex DNA (hDNA) regions with three to nine misma
80 t they cannot efficiently correct mismatched heteroduplex DNA (hDNA) that is formed adjacent to the D
81 to effect strand exchange during HR, forming heteroduplex DNA (hDNA) that is resolved by mismatch rep
82 e function of Rad54 is removal of Rad51 from heteroduplex DNA (hDNA) to allow HR-associated DNA synth
83 tiating DSB, with a short (<300 bp) tract of heteroduplex DNA (hDNA) to one side and hDNA on the othe
89 lectrophoretic mobility of homoduplex versus heteroduplex DNA hybrids in high concentration agarose g
90 o the DNA secondary structures (hairpins) in heteroduplex DNA in a DNA end-independent fashion and th
91 We have analyzed repair of nicked circular heteroduplex DNA in extracts of Exo1-deficient mouse emb
92 nation in male mice by analyzing patterns of heteroduplex DNA in recombinant molecules preserved by t
93 a single clone, suggesting the existence of heteroduplex DNA in the original recombination product.
94 port of this, analysis of the arrangement of heteroduplex DNA in the postmeiotic segregation products
95 Furthermore, at optimal salt concentration, heteroduplex DNA increases the kcat for ATP hydrolysis t
97 ation in the yeast Saccharomyces cerevisiae, heteroduplex DNA is formed when single-stranded DNAs fro
98 l repeats can be used for repair showed that heteroduplex DNA is likely to be unwound rather than deg
99 half-maximal concentration for activation by heteroduplex DNA is significantly lower under physiologi
101 Bs) but does not progress beyond this stage; heteroduplex DNA, joint molecules, and crossovers are no
102 ein A (RPA) proteins work in concert to make heteroduplex DNA joints during homologous recombination.
103 amino acids involved in the stabilization of heteroduplex DNA joints with mismatch-containing base tr
104 ic amino acids gain the ability to stabilize heteroduplex DNA joints with mismatch-containing base tr
108 (Tma) EndoV recognizes and primarily cleaves heteroduplex DNA one base 3' to the mismatch, as well as
109 ls initiated recombination, but did not form heteroduplex DNA or double Holliday junctions, suggestin
110 ciation of MutS from a mismatch using linear heteroduplex DNAs or heteroduplexes blocked at one or bo
111 of strand exchange, during the extension of heteroduplex DNA, or during the resolution of recombinat
112 tion machine") at a break, formation of long heteroduplex DNA, priming of DNA replication by a broken
113 upon ATP hydrolysis, leaving it stuck on the heteroduplex DNA product after DNA strand exchange.
116 e show here that these intermediates contain heteroduplex DNA, providing an important validation of t
117 usion protein bound to a short, 37-base pair heteroduplex DNA reveal that the protein binds to DNA as
118 g the process of homologous recombination, a heteroduplex DNA structure, or a 'Holliday junction' (HJ
120 activator-independent transcription from the heteroduplex DNA template and had substitutions within a
121 actions between polymerase II (Pol II) and a heteroduplex DNA template do not depend on general trans
123 ces to cleave single base pair mismatches in heteroduplex DNA templates used for mutation and single-
124 le the ATPase is activated by homoduplex and heteroduplex DNA, the half-maximal concentration for act
125 phosphorylated RPA initially binds to nicked heteroduplex DNA to facilitate assembly of the MMR initi
126 break repair (DSBR) to correct mismatches in heteroduplex DNA, to suppress recombination between dive
127 ns of MutS protein in close proximity to the heteroduplex DNA, we have utilized the photoactivated cr
128 bound to monosubstituted 5-IdUrd-containing heteroduplex DNAs were cross-linked with long-wavelength
129 tion indicates a defect in the correction of heteroduplex DNA, whereas the frequency of crossing-over
130 degradation of the ends or from formation of heteroduplex DNA which is corrected with a strong bias i
131 rotein A (RPA), can promote the formation of heteroduplex DNA, which is a key intermediate in homolog
132 smatch-specific endonuclease CEL I to cleave heteroduplex DNA with a very high specificity and sensit
133 monstrates that Uve1p recognizes and cleaves heteroduplex DNA with small unpaired loops but does not