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1 N-terminal methionine if it is followed by a hydrophobic residue.
2 found at a position typically occupied by a hydrophobic residue.
3 related with the decrease in the size of the hydrophobic residue.
4 epresented regions rich in proline and other hydrophobic residues.
5 us amino acid sequences containing basic and hydrophobic residues.
6 e region of Eis (residues 28-37) bearing key hydrophobic residues.
7 D access tunnel and are exposed to multiple hydrophobic residues.
8 positively charged residues intercalated by hydrophobic residues.
9 endent on an ordered sequence of charged and hydrophobic residues.
10 tact the phospholipid bilayer with basic and hydrophobic residues.
11 mer interface is formed by a small number of hydrophobic residues.
12 by binding sites characterized by acidic and hydrophobic residues.
13 Pro-392, and Thr-396, were mutated to small hydrophobic residues.
14 kelihood, medium/long-range contacts between hydrophobic residues.
15 and the subsequent re-packing of the N-lobe hydrophobic residues.
16 ction between multiple aligned ion pairs and hydrophobic residues.
17 re both the N-terminal and the 48 C-terminal hydrophobic residues.
18 bordered a drug-binding cavity dominated by hydrophobic residues.
19 phobicity equivalent to that of 5 contiguous hydrophobic residues.
20 cious binding locus lined with predominantly hydrophobic residues.
21 .3 that is based on two consecutive pairs of hydrophobic residues.
22 he protein collapse, mainly by burying their hydrophobic residues.
23 spanning channel to minimize the exposure of hydrophobic residues.
24 ly of AT1R homomers with a specific focus on hydrophobic residues.
25 a central cavity containing highly conserved hydrophobic residues.
26 e barrel core is fastened by three layers of hydrophobic residues.
27 with a cationic carboxy terminus depleted in hydrophobic residues.
28 eractions with the RGD motif plus downstream hydrophobic residues.
29 activity and substrate cleavage upstream of hydrophobic residues.
30 -cage's interior and the hydration of buried hydrophobic residues.
31 vesicle surface through its regularly spaced hydrophobic residues.
32 ed in glutamines/asparagines and depleted in hydrophobic residues.
33 n is the result of the membrane insertion of hydrophobic residues adjacent to the PI(3)P binding site
34 ng from the active site consisting mostly of hydrophobic residues, an environment well suited for fat
35 sequence, a spacer amino acid followed by a hydrophobic residue and a C-terminal vicinal disulfide m
36 pare peptide mixtures containing one type of hydrophobic residue and one type of cationic residue.
37 ng a narrow stretch of highly conserved gp41-hydrophobic residues and a critical arginine or lysine j
38 synergistic combination of both charged and hydrophobic residues and achieves the best binding metal
39 t Abeta42 oligomer has a minimal exposure of hydrophobic residues and is further stabilized by the E2
40 en-binding pocket, architecturally important hydrophobic residues and the hydrogen-bonding network ar
41 which become more favorable as the number of hydrophobic residues and thus van der Waals interactions
42 c side of the carrier is closed by conserved hydrophobic residues, and a salt bridge network, braced
43 ane pore, closed by three rings of conserved hydrophobic residues, and has a cytoplasmic cavern with
45 the carbohydrate-binding pockets, aliphatic hydrophobic residues are disfavored, whereas aromatic si
46 r the reactive residues, we find that nearby hydrophobic residues are essential, suggesting that the
49 ues adopt interfacial positions, and several hydrophobic residues are within the membrane interior.
50 the first two residue sidechains complement hydrophobic residues around the active site, while the t
53 ith a glutamine residue at position +1 and a hydrophobic residue at position -1, thus elucidating the
57 -terminally (i.e., at the P1 position) and a hydrophobic residue at the second position following the
60 ependent accessibility is delineated by four hydrophobic residues at homologous positions in each dom
61 P4, tryptophan or leucine at P2, arginine or hydrophobic residues at P1, and alanine or asparagine at
62 receptors containing each of four different hydrophobic residues at position 195 served as input dat
68 he HIV-1 fusion peptide, comprising 15 to 20 hydrophobic residues at the N terminus of the Env-gp41 s
69 peptidase with a preference for cysteine and hydrophobic residues at the N terminus of the hydrolyzed
71 s, including thermolysin, ZMPSTE24 preferred hydrophobic residues at the P1' position (Leu647), but i
72 ng affinity derives from burial of preferred hydrophobic residues at the P1, P4, and P2' positions of
73 s, the likely presence of adjacent polar and hydrophobic residues at the protein-membrane interface.
74 ing and transmembrane regions push conserved hydrophobic residues at the substrate entry site towards
80 bly arise from the introduction of two bulky hydrophobic residues by the substitutions Gln226Leu and
82 celle interaction include the anchoring of a hydrophobic residue cluster into gaps in the reverse mic
83 Consistent with a specificity for exposed hydrophobic residues, competition from native BSA only w
84 ility along an internal conduit of conserved hydrophobic residues, connecting the domain interface wi
85 Y-shaped, 18-20 A in length and comprised of hydrophobic residues, connecting the protein surface wit
86 ffer-Edmundson helical wheel representation, hydrophobic residues consisting of leucine were all foun
87 ining hydrogen-bonding networks, whereas the hydrophobic residues constrain the positioning of the ca
88 ing this short motif by inserting additional hydrophobic residues creates very powerful ADs that bind
89 analyses) to identify conserved networks of hydrophobic residues critical for clamp stability and ri
91 ermediate proteasomes fail to cleave between hydrophobic residues, despite a higher chymotrypsin-like
92 molecules at the interface between some key hydrophobic residues (e.g. Trp-64) and MoS2 surface also
94 y 4G8, suggesting that the chaperone shields hydrophobic residues exposed on the oligomeric assemblie
99 tivation gate, which is established by three hydrophobic residues, F518, Y563 and I612, in the middle
101 data support a model in which small neutral hydrophobic residues facilitate the post-translational c
102 ence of typical CXC pattern, with X being an hydrophobic residue facing towards the hydrophobic cavit
104 revealed a cis-prenyl transferase fold with hydrophobic residues for isoprenoid binding and a second
106 homologs, predicted the importance of three hydrophobic residues forming a patch on the surface of I
107 ure of an Atg7(NTD)-Atg3(FR) complex reveals hydrophobic residues from Atg3 engaging a conserved groo
110 tagenesis analysis shows that four conserved hydrophobic residues from the identified binding motif a
112 s also revealed the presence of a cluster of hydrophobic residues from transmembrane domains 2, 3, an
113 mulations, suggesting that I364 and adjacent hydrophobic residues function as a hydrophobic gate that
114 acement of Gly(332) and Leu(336) with larger hydrophobic residues (G332A and L336F) selectively augme
116 , where the buried positions are composed of hydrophobic residues, Hec1 possessed an unusual distribu
117 s and (ii) an increased exposition of buried hydrophobic residues, however it was observed a decrease
118 ch helps position the side chains of two key hydrophobic residues (I170 and L230), over the carboxyla
119 ue W61 of one subunit packs into a pocket of hydrophobic residues I366 and W410 of the adjacent subun
120 NCE In this study, we identified an aromatic hydrophobic residue in foot-and-mouth disease virus (FMD
121 pocket between TM-III and TM-V and that the hydrophobic residue in position III:16 constitutes a gat
124 Our previous studies identified a single hydrophobic residue in trans-membrane domain 7 of class
128 this configuration, MutY, surprisingly, uses hydrophobic residues in combination with hydrophilic res
132 10E8 indeed binds lipid bilayers through two hydrophobic residues in its CDR H3 (third heavy-chain co
135 id profiles indicated a higher proportion of hydrophobic residues in OD-FPH and hydrophilic residues
137 (R(h)>/=30 A) and contains local clusters of hydrophobic residues in regions that correspond to the f
138 ology of the two domains, a network of large hydrophobic residues in RRM2 provides a possible explana
139 While all Nek kinases strongly select for hydrophobic residues in the -3 position, the family sepa
140 on between WhiB1 and sigmaA4 is dominated by hydrophobic residues in the [4Fe-4S] cluster binding poc
144 ctric charge of the filaments, the number of hydrophobic residues in the constituent keratin polypept
146 at is driven by interactions of cationic and hydrophobic residues in the first EF-hand sequence.
149 over, site-directed mutagenesis of conserved hydrophobic residues in the JD (F363A/I364A, L356A, and
151 diates, each with a nonnative arrangement of hydrophobic residues in the MDM2 binding cleft, control
152 roteins, and that the position of acidic and hydrophobic residues in the motif plays the most importa
153 hase are induced by a unique motif featuring hydrophobic residues in the N1 and N2 positions adjacent
154 2-P2' region, demonstrating a preference for hydrophobic residues in the non-prime and hydrophilic re
157 showing predicted molecular interactions of hydrophobic residues in the S4 segment in disulfide-lock
161 ominent hydrophobic patch; reversion of four hydrophobic residues in this patch to their hydrophilic
164 state is locked between the backbone and two hydrophobic residues in transmembrane (TM)-III, upon act
167 tal structure near the A-cluster, defined by hydrophobic residues including F229, forms a cage surrou
168 rface charges and increased accessibility of hydrophobic residues (including the nuclear export seque
169 er surface and packs into its core conserved hydrophobic residues, including the Ile at position 181
170 domain bound sequences enriched in basic and hydrophobic residues, indicating that PTN conforms to th
171 and charge distribution, with predominantly hydrophobic residues, interspersed by some uncharged pol
172 e partitioning is driven by the insertion of hydrophobic residues into large packing defects that are
173 he Rop sequence to combine a specific set of hydrophobic residues into strikingly different hydrophob
174 an intracellular gate composed of a ring of hydrophobic residues is not only responsible for regulat
175 tein involving conservative substitutions of hydrophobic residues, key positions have been identified
177 ing interact with a complementary cluster of hydrophobic residues (L302, I364, and L393) in the beta-
178 conjugation to PTT and increased exposure of hydrophobic residues led to a significant increase in it
180 the substrate and product and identify four hydrophobic residues-Leu120, Leu144, Phe182, and Leu193-
181 Helix unwinding at the C-terminus allows key hydrophobic residues (Leu383 and Phe385) to make more ex
183 eed other intrinsically disordered proteins, hydrophobic residues likely drive Cdc42-ACK binding.
185 w the functional role of a highly conserved, hydrophobic residue located at the tip of each of the tw
186 s been attributed to the presence of a bulky hydrophobic residue located directly below the cofactor.
188 ne was determined, suggesting that burial of hydrophobic residues may be a driving force for assembly
191 rong acidic ADs contain multiple clusters of hydrophobic residues near acidic side chains, explaining
194 path (global); and repacking of a cluster of hydrophobic residues near the extracellular vestibule (l
195 ) consensus motif (PsiKX(D/E, where Psi is a hydrophobic residue)) near the scaffolding domain and th
197 on with new interactions between neutral and hydrophobic residues of about the same size: D231L/K178V
202 addition, Nfs1 was found to require the same hydrophobic residues of Isu for binding, as does Jac1, s
203 -directed mutagenesis on the surface-exposed hydrophobic residues of pvLAAD INS, and we found that th
204 sical analysis demonstrates that the central hydrophobic residues of the cap are essential to allow a
206 o the known requirements of the aromatic and hydrophobic residues of the core motif, we found the int
207 from the inner leaflet and is coordinated by hydrophobic residues of the M and E transmembrane helice
209 ion loop and alphaC-helix and an ensemble of hydrophobic residues of the Regulatory spine and Shell.
210 rane-proximal external region aromatics with hydrophobic residues of the transmembrane domain, and co
212 s indicate methionine oxidation perturbs key hydrophobic residues on one face of helix-C as follows:
213 and immunoprecipitation analyses implicated hydrophobic residues on one face of the M2AP galectin fo
217 affecting the relative placing of charged or hydrophobic residues on the helix severely impacted the
219 substituent on the isocoumarin inhibitor and hydrophobic residues on the protease reflect S' subsite
220 econfiguration rate is slow enough to expose hydrophobic residues on the same time scale that bimolec
221 econfiguration rate is slow enough to expose hydrophobic residues on the same time scale that bimolec
222 required for Rap1A activation and identified hydrophobic residues on the surface of the RA2 domain th
224 face residues, whereas basic and hydrophilic/hydrophobic residues only mildly modify its density.
226 were obtained by modification of individual hydrophobic residues or a predicted salt bridge, suggest
228 h the binding interfaces feature clusters of hydrophobic residues, overall, the protein-protein assoc
231 , and E-III (the FVYL pocket, comprising the hydrophobic residues Phe-1012, Val-1025, Tyr-1089, and L
234 affinity by distinct mechanisms; mutation of hydrophobic residues primarily alters association rate c
235 d TM-V into a tight pocket generated by five hydrophobic residues protruding from TM-III and TM-V.
236 d to strongly discourage the exposure of any hydrophobic residues, providing an enhanced hydrophobic
237 negatively charged, positively charged, and hydrophobic residues, respectively, together forming a u
238 the H protein, we identified two neighboring hydrophobic residues responsible for severe F-to-H bindi
240 hanges and possible burial of some antigenic hydrophobic residues resulted in reduction of antigenici
241 e, we characterized 26 Ala mutants of buried hydrophobic residues, spanning the three helices of the
242 volutionarily conserved pattern of polar and hydrophobic residues specifying recognition of discrete
244 pendent accessibility is demarcated by an S6 hydrophobic residue; substituted cysteines above this si
247 mbly of LC domains that are nearly devoid of hydrophobic residues, such as the 214-residue LC domain
248 ls an ~160- angstrom long channel lined with hydrophobic residues suitable for solubilizing multiple
249 Residues P193 and W222 comprise a series of hydrophobic residues surrounding the cofactor binding si
250 of high negative charge density and aromatic/hydrophobic residues that are distributed across the pro
251 ll interface residues, we identified several hydrophobic residues that are important for AHR dimeriza
252 erve that, although mutation of four surface hydrophobic residues that are unique to RelB does not af
253 es of 8-15 amino acids with regularly spaced hydrophobic residues that bind the export karyopherin CR
254 tions in hydrated powders, whereas it is the hydrophobic residues that experience the more pronounced
255 The m04 interior was packed by a myriad of hydrophobic residues that form distinct clusters around
256 s, we identified two acidic residues and two hydrophobic residues that form the peptide ligand bindin
257 the ATP binding cleft contained a number of hydrophobic residues that occlude ATP binding as expecte
258 n IRF-7 derives from a unique combination of hydrophobic residues that pack against the protein core.
259 l egress as cellular assays demonstrate that hydrophobic residues that penetrate deeply into the plas
260 sensus sequence motif of AOPXW (where O is a hydrophobic residue) that is highly conserved in the maj
261 not with the sign of the charges, while for hydrophobic residues, the surface densities are uncorrel
263 In the negative peptides, two changes of hydrophobic residues to glycine were especially abundant
264 sis revealed strict segregation of polar and hydrophobic residues to opposite faces of a predicted al
267 l pulling expose an increasing amount of the hydrophobic residues to the solvent molecules, and the u
268 between TM segments in the closed state pull hydrophobic residues together to form a hydrophobic plug
269 esidue 375 mutations that mimic the bulky or hydrophobic residues typically found in simian immunodef
270 r deducing a rule for SLC6 family members: a hydrophobic residue (Tyr or Val) in the +2 position spec
271 sting that, for peptide-CPP chimeras, distal hydrophobic residues upstream of the CPP sequence can ha
272 ment analysis demonstrates that a cluster of hydrophobic residues (V101, L104, and V162) within the C
274 roles of the platform His115-Arg127 and the hydrophobic residues Val120 and Leu123 in dG:dGTP misinc
275 tion by site-directed mutagenesis of barrier hydrophobic residues (Val50, Leu54, Leu170, Leu174) to a
276 together within a capsomer, where the E-loop hydrophobic residue W61 of one subunit packs into a pock
277 fundamentally differentiates it from purely hydrophobic residues, we have used in vitro cellular exp
278 s on newly exposed protein surfaces, several hydrophobic residues were mutated, two polypeptide segme
279 hobic interaction between the side chains of hydrophobic residues were still partly retained, imparti
280 nus side of the HA PCS (P2 position) avoided hydrophobic residues, whereas the P3 position avoided hy
281 side chains of Tyr-131 and Ala-134 with core hydrophobic residues, whereas the reactive center loop h
282 cognized conserved motif, PXGG (X is a large hydrophobic residue), which is in a hydrophobic region p
283 es in four pockets by contributing different hydrophobic residues, which are spread along the subunit
284 embrane-binding domain composed of basic and hydrophobic residues, which is necessary and sufficient
287 s simultaneous substitution of four aromatic/hydrophobic residues with Ala dramatically impairs both
290 structs containing substitutions of the most hydrophobic residues within each of the two fusion loops
292 orroborates mutagenesis implicating multiple hydrophobic residues within the AI segment that contribu
293 ulations, here we identified single aromatic/hydrophobic residues within the amyloid core IAPP region
294 directed mutagenesis was used to explore the hydrophobic residues within the MD-2 binding pocket as t
296 site-directed mutagenesis of outward-facing hydrophobic residues within the transmembrane region of
298 s demonstrate that mutations in a cluster of hydrophobic residues within transmembrane domain 1 affec
299 is governed by an HbYX motif (where Hb is a hydrophobic residue, Y is tyrosine, and X is any amino a