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1 their DNA structure and primary sequence are hypervariable.
3 inical isolates by pyrosequencing within the hypervariable A region of the 16S rRNA gene was compared
4 and functional analyses identified 351 sites hypervariable across isolates and numerous putative regu
5 ecies revealed that the N-terminal domain is hypervariable among species yet is conserved with regard
7 pheral peptide residues and the roles of the hypervariable and germline CDR loops in engaging peptide
8 nd NA are directed against epitopes that are hypervariable and not against epitopes that are conserve
11 Using universal primers that amplify the hypervariable bacterial 16 S rRNA gene as a model system
12 thin filament proteins, and its sequence is hypervariable between fiber type and developmental isofo
14 ich is composed of an invariant domain and a hypervariable C terminus, as a key component of self-rec
17 e-directed mutagenesis now indicate that the hypervariable C-terminal region of beta5 plays no role i
19 CD1d affinities are further modulated by the hypervariable CDR3 beta loop, thereby defining a functio
20 receptor then contacts the peptide using the hypervariable CDR3 loops as the transition state decays
21 C ligand derives largely from the juxtaposed hypervariable CDR3 regions on the TCRalpha and TCRbeta c
23 , it is unclear if affinity mutations in the hypervariable CDRs generally impact antibody stability a
25 variations and the presence and structure of hypervariable chromosomal elements indicate that there i
29 at replacing ANDV residues 252 to 296 with a hypervariable domain (HVD) from MAPV N prevents IFNbeta
30 es demonstrated the critical function of the hypervariable domain (HVD) in EEEV nsP3 for the assembly
32 Previously, we have demonstrated that the hypervariable domain (HVD) of CHIKV nsP3 contains linear
36 peting hypothesis is that the Rab C-terminal hypervariable domain (HVD) serves as a subcellular targe
37 ese nonstructural proteins, nsP3, contains a hypervariable domain (HVD), which demonstrates very low
38 of nsp2 (the PLP2 protease domain [OTU], the hypervariable domain [HV], the putative transmembrane do
40 scovered that ANDV S386 and an ANDV-specific hypervariable domain permit ANDV N to inhibit IFN induct
41 ar domains: a conserved N-terminal domain, a hypervariable domain, and an acidic C-terminal domain.
42 rved N-terminal domain of VP90 but lacks the hypervariable domain, which forms the capsid surface spi
43 t can be applied as live vaccines.IMPORTANCE Hypervariable domains (HVDs) of alphavirus nsP3 proteins
44 those of other teams have demonstrated that hypervariable domains (HVDs) of the alphavirus nsP3 prot
45 e receptor and the surface (SU) glycoprotein hypervariable domains are required for binding affinity
46 Here, we report on the development of the hypervariable domains D1/D2 of the large ribosomal subun
50 and gene copy number variation (CNV) at the hypervariable DRB locus within the MHC region to HPV ser
52 uple), GTPases and proteolytic cascades with hypervariable effectors, which vary either by using a re
53 es were as variable as other accessible, non-hypervariable Env sites (p = 0.50, Mann-Whitney U-test)
54 mutations by acting like a blanket over the hypervariable epitope, thereby providing effective viral
56 de a transmembrane receptor protein with two hypervariable extracellular regions similar to immunoglo
60 three variable island regions, with the most hypervariable genes concentrated at one end of the genom
62 t strains identified, with (except for a few hypervariable genes) the EEHV2, EEHV3, and EEHV6 strains
63 by less than 1% within populations, even in hypervariable genome regions, and by 42-71% between popu
64 ndings uncover a novel and cryptic source of hypervariable genomic diversity with global regulatory c
65 understanding floral scent variation in this hypervariable genus is its geographically diverse intera
69 Kupffer cell interaction is mediated by the hypervariable (HVR) loops of the virus hexon protein, we
70 e consisting of an extracellular region with hypervariable Ig domains, a transmembrane domain, and a
71 Adaptive immunity in humans is provided by hypervariable Ig-like molecules on the surface of B and
74 These studies reveal sequences upstream, hypervariable in the human population (HVR3), and downst
76 BorreliaBase allows online identification of hypervariable lipoprotein genes, potential regulatory el
80 ns of Africa was therefore surprising as one hypervariable loop contains the entire collagen-binding
81 eir concave surface, in addition to a unique hypervariable loop in the C-terminal LRR capping module.
82 ht chains, the majority of CDR-L3 [the third hypervariable loop of the light chain variable domain (V
83 ally divergent face of the protein formed by hypervariable loop segments, confirming that TRIM5alpha
84 ity (together with the local dynamics of the hypervariable loop within domain 3) could facilitate rec
85 riations in the common core and emergence of hypervariable loops extending from the core contributed
88 3 our results suggest that the spacer domain hypervariable loops may exercise significant control of
90 ity in structure is most apparent in the six hypervariable loops of the complementarity-determining r
92 Antibodies recognize antigens through six hypervariable loops, five of which have a limited set of
93 e heavy and light chain each providing three hypervariable loops, which are varied to generate divers
95 The haplotigs accurately characterized the hypervariable major histocompatability complex region as
98 study reveals that a previously undescribed hypervariable molecule bearing three extracellular domai
99 orphisms within the Helicobacter pylori CagL hypervariable motif (CagLHM) in gastric cancer-associate
103 n-specific splice variant repertoires of the hypervariable pattern recognition receptor AgDscam.
104 al fusion of a reporter lacZ fragment to the hypervariable poly-Psi domain facilitated measurement of
108 kines was localized to 40 amino acids in the hypervariable region (amino acids 301-340) of the protei
109 me of the hepatitis E virus (HEV) contains a hypervariable region (HVR) in ORF1 that tolerates small
110 simulations highlight that the membrane and hypervariable region (HVR) interact with both alpha- and
111 rnesylated and positively charged C-terminal hypervariable region (HVR) is critical to its oncogenic
112 man ribosomal protein S17 (RPS17) within the hypervariable region (HVR) of the HEV ORF1 protein.
113 Comparative sequence analysis revealed a hypervariable region (HVR) with extensive sequence varia
114 cently, insertions and rearrangements of the hypervariable region (HVR) within the HEV genome, allowi
115 -Ras4B is predominantly autoinhibited by its hypervariable region (HVR), whereas the GTP-bound state
116 Previous studies have shown that the first hypervariable region (V1 loop) is immunogenic on soluble
119 edly reduced binding when amino acids within hypervariable region 1 (HVR1) and at sites approximately
120 of viral envelope glycoprotein E2, including hypervariable region 1 (HVR1) and N-linked glycans.
123 which we find maps to a specific site within hypervariable region 1 (HVR1) of AdV5 hexon, has no appa
124 f HCV and shielding of important epitopes by hypervariable region 1 (HVR1) of E2 are believed to be m
129 to Huh7.5 cells to produce a quasispecies of hypervariable region 1 (HVR1) that mimicked that circula
134 1a)/JFH1 or the highly antibody-susceptible hypervariable region 1 (HVR1)-deleted variants H77/JFH1D
135 tify AR3A resistance substitutions that have hypervariable region 1 (HVR1)-dependent effects on HCV v
136 that major outer membrane protein 1 (OMP-19) hypervariable region 1 (HVR1)-specific human monoclonal
140 d, ranging from high diversity (the envelope hypervariable region 1 [HVR1]) to almost no diversity (t
141 alizing epitopes on the E1 N-terminus and E2 hypervariable region 1 did not differ significantly.
142 on of SR-BI governed by specific residues in hypervariable region 1 of E2 leading to enhanced cell en
145 Next-generation sequencing data from the hypervariable region 1 of HCV were analyzed using Global
146 is virus (VSV)/HCV pseudotype model that the hypervariable region 1 of the HCV E2 envelope glycoprote
148 equence revealed amino acid substitutions in hypervariable region 1 that were responsible for a drama
149 yethylene glycol to a specific site in hexon hypervariable region 1 yielded vector particles that wer
151 s, suggesting purifying selection, except in hypervariable region 1, where positive selection pressur
152 for immunogenicity in mice, with and without hypervariable region 1, which is an immunogenic region a
155 a single immunization of chimeric rAd5 hexon hypervariable region 48 (rAd5HVR48) vectors expressing S
156 MiSeq and Roche454 platforms using the V3-V4 hypervariable region also showed a high level of concord
157 membrane but is tethered via its C-terminal hypervariable region and carboxymethylated farnesyl moie
162 ith bNAb sensitivity, including amino acids, hypervariable region characteristics, and clade effects
163 extension containing a His- and Asp/Glu-rich hypervariable region followed by a highly conserved sequ
164 d for identification of the 16S rRNA gene V3 hypervariable region from Escherichia coli genomic DNA.
165 two primer pairs demonstrated that the V3-V4 hypervariable region had significantly better capture of
166 etion variants of UreG demonstrated that the hypervariable region has a minor impact on activation ef
167 Here we show that the human mitochondrial hypervariable region II can function as a molecular fing
168 esent high-throughput sequencing analysis of hypervariable region II for spatial resolution of the co
169 e induction of Gal-3 expression requires the hypervariable region in the extracellular domain of beta
170 sitive to GM-CSF, mutations within the N-Ras hypervariable region induced N-Ras mislocalization and a
171 in primary structure within the immunogenic hypervariable region microdomains and tested whether the
172 ted nanoclustering of H-ras helix alpha4 and hypervariable region mutants that have different bona fi
173 S ribosomal RNA amplicon sequences in the V4 hypervariable region obtained from 492 studies worldwide
174 .1 M bacterial pyrotag sequences from the V6 hypervariable region of 16S rRNA genes from 38 influent
175 human hepatoma cells when inserted into the hypervariable region of a genotype 1 strain, but this ch
178 a crucial but commonly coded residue in the hypervariable region of CDR3 provide the basis for the s
179 rough elevated signal produced to the unique hypervariable region of each - 2/114 in HL-60, 3/114 in
182 tration calorimetry, we demonstrate that the hypervariable region of K-Ras4B contributes in a major w
183 histocompatibility antigens, we examined one hypervariable region of mtDNA, designated hypervariable
184 r results show that in the murine model, the hypervariable region of PilE is required to activate imm
185 ly bound to the CAAX motif in the C-terminal hypervariable region of Rac1, and then inhibited Rac1 me
188 zed by bar-coded pyrosequencing of the V3-V5 hypervariable region of the 16S rRNA gene, defining 662
189 ent study, using pyrosequencing of the V1-V2 hypervariable region of the 16S rRNA gene, reported find
192 idase subunit 1 gene of nematodes and the V3 hypervariable region of the bacterial 16 s ribosomal RNA
193 d a tag-sequencing strategy targeting the V6 hypervariable region of the bacterial small-subunit (16S
194 ndings indicate that sequence variation in a hypervariable region of the degron affects JAZ stability
196 This residue is located in the C-terminal hypervariable region of the proteins and is not conserve
197 several single-nucleotide substitutions in a hypervariable region outside the SAM-binding core can al
198 g GC and AT rich motifs correlated well with hypervariable region recombination sites across the HAdV
200 ing more than 1.7 million bacterial 16S rRNA hypervariable region sequences from 52 to 56 samples per
201 in the plasma membrane via lipid-tethers and hypervariable region side-chain interactions in distinct
202 n reaction was performed to amplify 16S rRNA hypervariable region V3-V4, and constructed libraries we
203 had greater accuracy than sequencing of the hypervariable region V4 in determining genus and species
207 Sequence diversities in the G protein second hypervariable region were observed in the duplicated reg
209 -DR alleles sharing amino acids at the third hypervariable region with DRB1*0401(shared epitope) are
211 e, and -f were mapped within the nsp2 middle hypervariable region, but no conserved cleavage sites co
213 Results obtained from the V3-V4 16S rRNA hypervariable region, sequencing on the MiSeq and Roche4
214 key changes to the lipidation pattern of the hypervariable region, suggest that dimerization is a gen
215 ferences between RAS isoforms lie within the hypervariable region, the additional confinement of KRAS
216 mice, suggesting that in the absence of the hypervariable region, the conserved regions of PilE alon
224 ing antibodies typically recognize M protein hypervariable regions (HVRs) and confer narrow protectio
225 at CaM preferentially binds unfolded K-Ras4B hypervariable regions (HVRs) and not alpha-helical HVRs.
227 us catalytic domains and flexible C-terminal hypervariable regions (HVRs) that differ across Ras isof
232 tes microbial communities, but sequencing of hypervariable regions 1-3 of the 16S rRNA gene provides
233 hanges both within the traditionally defined hypervariable regions and downstream, near the 3'-end of
234 r multiple markers such as the 16S rRNA gene hypervariable regions are available, MetAmp improves the
236 cally infected individuals by sequencing the hypervariable regions encoding TCR alpha and beta polype
237 identified in at least two of five examined hypervariable regions for every virus, suggesting the ev
238 g it into our Ad5 vector containing all nine hypervariable regions from Ad43, Ad5.H(43m-43), increase
239 m TRUST to extract the B cell immunoglobulin hypervariable regions from bulk tumor RNA-sequencing dat
240 the specific amplification of 18s rRNA gene hypervariable regions from eukaryotic microbes: anneal-i
245 nd ESPRIT-Tree, sequence data from different hypervariable regions of 16S rRNA were used and binning
246 serotype 5 (Ad5) vector containing the hexon hypervariable regions of Ad serotype 48 (Ad48) and expre
247 hexon-modified vector that carried the hexon hypervariable regions of Ad48, indicating that the SP mu
249 Finally, features of the first and second hypervariable regions of gp120 (V1V2) may be critical fo
251 oes is efficiently surveyed by sequencing of hypervariable regions of the 16s ribosomal RNA (rRNA) ge
252 lyzed by FLX+ pyrosequencing of the V1 to V4 hypervariable regions of the 16S rRNA gene and polymeras
253 Unique melt profiles generated from multiple hypervariable regions of the 16S rRNA gene for 100 clini
254 DNA was amplified with primer pairs covering hypervariable regions of the 16S rRNA gene: primers 63F
256 Conventional genotyping methods target small hypervariable regions of the M. bovis genome and provide
258 ences between D1 domains are concentrated in hypervariable regions on the front sheet strands of the
259 s in the mtDNA control region, including the hypervariable regions typically sequenced in a forensic
260 two species by pyrosequencing the 16S V1-V3 hypervariable regions using the 454 GS FLX Titanium plat
261 pected microbial profiles, sequencing of the hypervariable regions V1-V3 of the 16S ribosomal RNA gen
263 analysis indicates that alternative 16S rRNA hypervariable regions will present similar challenges, w
264 s identified as phage morons were located in hypervariable regions within individual SVMs, indicating
266 ure as determined via 18S rRNA (V4 and V8-V9 hypervariable regions) and 16S rRNA (V1-V3) gene amplico
277 alyzed 815,377 autosomal SNPs, mitochondrial hypervariable segments I and II, and 36 Y-chromosome STR
278 r 32 lineage-defining mitochondrial SNPs and hypervariable sequence (HVS) 1, Tamil castes have higher
281 ed to identify both conserved SLs and unique hypervariable SLs within Heterodera glycines, the soybea
283 ison, deletion of loop 2, which contains the hypervariable splice region, did not reduce the ability
290 composition through the use of 16S rRNA gene hypervariable tag sequencing has profound health implica
291 t microbial populations were generated using hypervariable tag sequencing of the V3-V5 region of the
294 this family of genes are characterized by a hypervariable "toxin" region capable of encoding a wide
295 Genotypic linkage was maintained within hypervariable UL73/UL74 and RL12/RL13/UL1 loci for virus
296 rived from next-generation sequencing of the hypervariable V3 region of the 16S ribosomal RNA gene sh
297 acer using two approaches, pyrosequencing of hypervariable V3-V5 regions of the 16S rRNA gene and who
298 f linear peptides corresponding to the third hypervariable (V3) loop of gp120 failed to inhibit serum
299 Pro(313)-Gly(314)-Arg(315) arch of the third hypervariable (V3) loop of the HIV-1 surface glycoprotei
300 associated multigene families, including the hypervariable var genes, is broadly conserved, but P. fa