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1                                              kDNA decatenation assay indicated that XWL-1-48 signific
2                                              kDNA synthesis involves release of individual minicircle
3                                              kDNA, the mitochondrial genome of trypanosomatids, is a
4                     Database searching for a kDNA replicative polymerase (pol) revealed no mitochondr
5                  RNAi depletion of PNT1 in a kDNA independent cell line resulted in kinetoplast loss
6  binding domain of AEP-1 results in aberrant kDNA structure and reduced cell growth, indicating that
7                            Here, we analyzed kDNA, its expression, and RNA editing of two members of
8 poisomerase II interaction (DNA cleavage and kDNA decatenation assays), alongside cytotoxicity tests
9 rsal minicircle sequence-binding protein and kDNA loss.
10  measured by real-time qPCR: OligoC-TesT and kDNA PCR detected 100% and 99% of positive samples when
11 ries of analogues of the known antiprotozoal kDNA binder 2-((4-(4-((4,5-dihydro-1H-imidazol-3-ium-2-y
12 d their knockdown by RNA interference caused kDNA network shrinkage.
13                   This overexpression caused kDNA loss by oxidation/inactivation of the universal min
14 ins), that neutralize the negatively charged kDNA, thereby affecting the activity of mitochondrial en
15 sed of thousands of interlocked DNA circles (kDNA).
16 led assignment of proteins to five classes - kDNA synthesis, site of scission selection, scission, se
17 ecombinant proteins is capable of compacting kDNA networks in vitro and was shown to bind preferentia
18 ciated proteins in organizing and condensing kDNA networks into this disc structure, we have cloned t
19 lear extracts containing Metnase decatenated kDNA more rapidly than those without Metnase, and neutra
20   At later times following TbLOK1 depletion, kDNA was lost and a more drastic alteration in mitochond
21                                 PCR detected kDNA more frequently in biopsies (detection level, 83.9%
22 ts localization patterns vary with different kDNA replication stages.
23               In this review, I will discuss kDNA from the astonished perspective of a polymer physic
24    We compared the decay of kinetoplast DNA (kDNA) and spliced-leader RNA (SL-RNA) in vitro, in vivo,
25              By considering kinetoplast DNA (kDNA) as a template for cleavage into two equal-size net
26  uniparental for maxicircle kinetoplast DNA (kDNA) but biparental for minicircle kDNA.
27 ondrial genome, also called kinetoplast DNA (kDNA) forms an Olympic-ring-like network of interlinked
28                             Kinetoplast DNA (kDNA) is a novel form of mitochondrial DNA consisting of
29                         The kinetoplast DNA (kDNA) is a topologically complex genome, made by thousan
30                             Kinetoplast DNA (kDNA) is organized into a concatenated network of mini a
31 whole linearized minicircle kinetoplast DNA (kDNA) of the Leishmania subgenus Viannia from biopsy lys
32 C-TesT with those of nested kinetoplast DNA (kDNA) PCR, nested internal transcribed spacer 1 (ITS-1)
33               The multicopy kinetoplast DNA (kDNA) probes were the most sensitive and useful for quan
34 ome of trypanosomes, termed kinetoplast DNA (kDNA), contains thousands of minicircles and dozens of m
35                             Kinetoplast DNA (kDNA), from trypanosomatid mitochondria, is a network co
36 osome mitochondrial genome, kinetoplast DNA (kDNA), is a massive network of interlocked DNA rings, in
37       This genome, known as kinetoplast DNA (kDNA), is organized as a single, massive DNA network for
38 able DNA structure known as kinetoplast DNA (kDNA), isolated from a parasite.
39 ion of RNAi was the loss of kinetoplast DNA (kDNA), the cell's catenated mitochondrial DNA network.
40                             Kinetoplast DNA (kDNA), the form of mitochondrial DNA in trypanosomatids,
41                             Kinetoplast DNA (kDNA), the mitochondrial DNA in kinetoplastids, is a net
42                             Kinetoplast DNA (kDNA), the mitochondrial DNA of trypanosomatids, consist
43                             Kinetoplast DNA (kDNA), the trypanosome mitochondrial DNA, contains thous
44                             Kinetoplast DNA (kDNA), the trypanosome mitochondrial genome, is a giant
45                             Kinetoplast DNA (kDNA), the unusual mitochondrial DNA of Trypanosoma bruc
46  library screen for loss of kinetoplast DNA (kDNA), we identified an uncharacterized Trypanosoma bruc
47  of the Leishmania species' kinetoplast DNA (kDNA).
48 cles and maxicircles called kinetoplast DNA (kDNA).
49 DNA molecules that form the kinetoplast DNA (kDNA).
50  mitochondrial DNA known as kinetoplast DNA (kDNA).
51 not (decatenate) and cleave kinetoplast DNA (kDNA).
52               The AT-rich mitochondrial DNA (kDNA) of trypanosomatid parasites is a target of DNA min
53 ns a kinetoplast with the mitochondrial DNA (kDNA), comprising of >70% AT base pairs.
54                                 For example, kDNA replication without segregation causes the networks
55 dy in intact cells and in isolated flagellum-kDNA complexes.
56                                    Following kDNA replication, the TAC mediates network segregation,
57  the molecular mechanism of compensation for kDNA loss by showing FO-independent generation of the mi
58 ce HMG box-containing proteins essential for kDNA function from their kDNA binding sites.
59 ergetically demanding apparatus required for kDNA maintenance and expression serves the production of
60                    Additionally, a defect in kDNA replication was observed in the 2N1K cells.
61 F8 arrests cell growth and causes defects in kDNA segregation.
62  mitochondrial architecture that function in kDNA replication.
63 seven DNA polymerases (pols) are involved in kDNA transactions, including three essential proteins re
64  and different classes of DNA minicircles in kDNA.
65 f type II topoisomerases that participate in kDNA metabolism (we term the T. brucei brucei gene TbTOP
66 sential protein, it plays important roles in kDNA arrangement and replication, as well as in the main
67 ycle suggests that other processes involving kDNA occur in this domain.
68 intenance and expression of its kinetoplast (kDNA), the mitochondrial genome of this parasite and a p
69 division of mitochondrial DNA (kinetoplast) (kDNA).
70 ts and analyzed by qPCR targeting Leishmania kDNA.
71           RNAi of TbPIF8 causes only limited kDNA shrinkage but the networks become disorganized.
72 ast DNA (kDNA) but biparental for minicircle kDNA.
73                    Within the mitochondrion, kDNA is condensed into a disk-shaped structure positione
74              Unlike all other DNA in nature, kDNA comprises a giant network of interlocked DNA rings
75 erence leads to pleomorphic nuclear (but not kDNA) abnormalities and early growth arrest.
76  by RNAi there is a striking accumulation of kDNA late theta structure replication intermediates, wit
77        The level of decatenation activity of kDNA was comparable in nuclear extracts from control or
78                           The arrangement of kDNA is related to the presence of histone-like proteins
79                    The unusual complexity of kDNA would indicate that numerous proteins must be invol
80                         While the details of kDNA structure and this type of RNA editing are well est
81                             The detection of kDNA in biopsies from chronic lesions was enhanced by a
82   TbPIF8 is positioned on the distal face of kDNA disk and its localization patterns vary with differ
83 cle-dependent changes in the localization of kDNA replication enzymes by combining immunofluorescence
84 can compensate for complete physical loss of kDNA in these parasites.
85 ation intermediates, with subsequent loss of kDNA networks and halt in cell growth.
86 in growth inhibition and progressive loss of kDNA networks.
87                                  The loss of kDNA was preceded by gradual shrinkage of the network an
88 iability and is important for maintenance of kDNA.
89 their mode of action with diverse methods of kDNA decatenation, DNA-Topo cleavage complex, comet, DNA
90 ania life stages retained similar numbers of kDNA maxi- or minicircles.
91 ected in the antipodal sites at the onset of kDNA replication.
92 olved in the organization and segregation of kDNA networks in trypanosomatids.
93 , and its discovery will facilitate study of kDNA segregation machinery at the molecular level.
94 o complete the topologically complex task of kDNA replication is unknown.
95 nterval [CI], 63 to 78%), similar to that of kDNA PCR (72%; 95% CI, 65 to 80%; P = 0.69) but signific
96 ts on replication enzymes, how the timing of kDNA synthesis is controlled during the cell cycle, and
97 inct categories, we describe a novel type of kDNA organization in T. lewisi.
98                I decided to take a chance on kDNA.
99       RNAi of p166 has only small effects on kDNA replication, but it causes profound defects in netw
100 In this review, we discuss recent studies on kDNA structure and replication, emphasizing recent devel
101 used preferential blockage of cytokinesis or kDNA division.
102  intricate mitochondrial DNA (kinetoplast or kDNA) in the form of a network of thousands of interlock
103  intricate mitochondrial DNA (kinetoplast or kDNA) of Trypanosoma brucei brucei and related kinetopla
104 ng the mitochondrial genome of the parasite (kDNA), with an accumulation of the protein at or near th
105   To test their validity for quantification, kDNA copy numbers were compared between Leishmania speci
106  the next forty years of my life to studying kDNA replication.
107  degraded more rapidly during treatment than kDNA, and correlated better with microscopic examination
108                                          The kDNA genome was annotated by BLASTn before the genome co
109                                          The kDNA sequences were isolated and assembled using the SPA
110 the inner unilateral filaments adjoining the kDNA disc.
111     TbPOLIB and TbPOLIC localized beside the kDNA where replication occurs, and their knockdown by RN
112 vered p166, a protein localizing between the kDNA and basal body in intact cells and in isolated flag
113 alizes to the region of the cell between the kDNA and the flagellum and purifies with the tripartite
114                    Most genes encoded by the kDNA require a posttranscriptional modification process
115 en localized to antipodal sites flanking the kDNA disk along with nascent DNA minicircles.
116 localize in two antipodal sites flanking the kDNA during replication, they behave differently at othe
117 e enzyme in two antipodal sites flanking the kDNA, show that a function of this topoisomerase II is t
118  a structure believed to physically link the kDNA and flagellar basal bodies.
119 ucture rich in basic proteins that links the kDNA discs during their segregation and is maintained be
120  a link between the unusual structure of the kDNA and RNA editing in trypanosome mitochondria.
121 itochondrial matrix at opposite edges of the kDNA disc.
122    In Crithidia fasciculata, rotation of the kDNA disk relative to the antipodal attachment sites res
123 nicircles accumulate on opposite ends of the kDNA disk, a pattern that did not suggest kinetoplast mo
124 podal sites and also at the two faces of the kDNA disk.
125 ent mutants exhibited high compaction of the kDNA network and displayed atypical phenotypes, such as
126        The minicircles replicate free of the kDNA network but nicks and gaps in the newly synthesized
127                       The replication of the kDNA network is more complex than previously thought, an
128      Based on fluorescence microscopy of the kDNA network undergoing replication, we now report that
129 per, I found the electron micrographs of the kDNA networks to be rather beautiful.
130  AEP-1 is involved in the maintenance of the kDNA.
131 l DNA could be repaired, suggesting that the kDNA in the kinetoplast of trypanosomatids has unique re
132 hods and appear to be present throughout the kDNA.
133 alizes within the mitochondrion close to the kDNA disk in patterns that vary with the cell cycle.
134 ds remain at the time of reattachment to the kDNA network.
135 sertion and deletion editing events upon the kDNA transcriptome.
136 16 shows that p16 is present both within the kDNA disc and in the mitochondrial matrix at opposite ed
137 teins essential for kDNA function from their kDNA binding sites.
138 important when I learned that parasites with kDNA threaten huge populations in underdeveloped tropica
139             I had no doubt that working with kDNA would be a challenge, as I would be exploring uncha

 
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