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1 wnstream lncRNA, Falcor (Foxa2-adjacent long noncoding RNA).
2 expanding the functional repertoire of long noncoding RNA.
3 s, reactive species, biogenic volatiles, and noncoding RNA.
4 , which has been thus far mainly confined to noncoding RNA.
5 ed the biological importance of Y chromosome noncoding RNA.
6 Transfer RNAs (tRNAs) are a major class of noncoding RNA.
7 nt modified base in eukaryotic mRNA and long noncoding RNA.
8 les cells to selectively regulate coding and noncoding RNAs.
9 d in messenger (mRNA), ribosomal (rRNA), and noncoding RNAs.
10 re and focus on the developing field of long noncoding RNAs.
11 cription termination of upstream interfering noncoding RNAs.
12 hers lacking protein-coding potential, named noncoding RNAs.
13 half of eIF4E-capping targets identified are noncoding RNAs.
14 ns in protein-coding genes than for those in noncoding RNAs.
15 -responsive genes, including over a thousand noncoding RNAs.
16 DNA strand, constitute an important group of noncoding RNAs.
17 in array analyses of messenger RNAs and long noncoding RNAs.
18 ted (VA) RNAs are the first discovered viral noncoding RNAs.
19 ent mechanisms common to processing of other noncoding RNAs.
20 fications, and involvement of small and long noncoding RNAs.
21 ability and, hence, expression of coding and noncoding RNAs.
22 control of gene expression via this class of noncoding RNAs.
23 reased capping efficiency of ~100 coding and noncoding RNAs.
24 ammalian genomes encode tens of thousands of noncoding RNAs.
26 we identified a hypermethylation in the long noncoding RNA 299 (LINC00299) gene in blood-derived DNA
29 seq detects the expression of low-abundance, noncoding RNAs and at least half of the protein-coding g
30 etics - the regulation of gene expression by noncoding RNAs and chemical modifications to DNA or DNA-
31 The obstacles and promises of targeting long noncoding RNAs and circRNAs as therapeutic modalities in
32 aiming at targeting these microRNAs and long noncoding RNAs and exploit their potential as clinical b
35 multiple mechanisms including regulation of noncoding RNAs and multiple core transcription factors.
36 edgehog signaling, Hippo-YAP signaling, long noncoding RNAs and somatic drivers, and support a role f
37 Here we review recent progress involving noncoding RNAs and their functions in the Apicomplexa, w
39 onal role of messenger RNAs, microRNAs, long noncoding RNAs, and circular RNAs (ie, regRNAs) in heart
40 disease-associated disruption of nucleoli by noncoding RNAs, and establish locus-targeted R-loop modu
42 incRNAs as valuable resources for studies in noncoding RNAs, and we provide biological insights for 2
43 g RNAs such as circular RNAs, YRNAs, or long noncoding RNAs are currently gaining increasing attentio
44 iRNAs in AAA is established, studies on long-noncoding RNAs are only beginning to emerge, suggesting
46 Circular RNAs (circRNAs), a class of long noncoding RNAs, are known to be enriched in mammalian ne
47 As-short noncoding RNAs (microRNAs) and long-noncoding RNAs-are emerging as new fundamental regulator
48 we elucidated the molecular functions of the noncoding RNA, ARID5B-inducing enhancer associated long
51 uss the potential role of microRNAs and long noncoding RNAs as clinical biomarkers and therapeutics.
52 NA, can include both protein-coding RNAs and noncoding RNAs, as long as they contribute, directly or
54 o significant progress in the development of noncoding RNA-based next-generation therapeutics for car
57 ed mechanism for 5' tRNA fragment control of noncoding RNA biogenesis and, consequently, global chrom
58 the ring-shaped Ro 60-kDa (Ro60) protein and noncoding RNAs called Y RNAs, are present in all three d
59 results show for the first time that a long noncoding RNA can regulate A-to-I RNA editing, further e
64 rovide an overview of the different types of noncoding RNAs controlling the vasculature and focus on
68 igenetic control mechanisms, including small noncoding RNAs, DNA methylation, and histone modificatio
71 ed genome-wide methylation profile: the long noncoding RNA ephemeron, whose rapid upregulation is cru
72 EBV-encoded RNAs (EBERs) are among the first noncoding RNAs ever identified and have been the subject
75 neuropeptides, neurotransmitters, mRNA, and noncoding RNA expression signatures, while we do not rev
76 alterations to DNA methylation patterns and noncoding RNA expression throughout the brain's reward c
77 tone modification, chromatin remodeling, and noncoding RNA expression, and elucidates potential strat
79 piRNAs comprise the largest group of small noncoding RNAs found in humans, and they are distinct fr
81 uggest that this troublesome gene region has noncoding RNA functions, possibly related to conflict be
83 The glucocorticoid receptor (GR) binds the noncoding RNA Gas5 via its DNA-binding domain (DBD) with
86 n persistent infection, the circRNA class of noncoding RNAs has only recently been identified in gamm
87 ression and increased expression of EBER1, a noncoding RNA highly expressed in latently infected cell
88 yme 1A (DCP1A) as a key regulator of Tsix, a noncoding RNA implicated in allelic choice through X-chr
89 the largest class of germline-enriched small noncoding RNAs implicated in the epigenetic silencing of
101 ach other and are transcribed from divergent noncoding RNAs in the latency-associated transcript (LAT
102 ious studies have identified the presence of noncoding RNAs in the major zoonotic pathogen Campylobac
103 the RNA; 2) eIF4E physically associates with noncoding RNAs in the nucleus; and 3) approximately half
107 are widely used for the expression of small noncoding RNAs, including short hairpin RNAs for RNAi ex
109 dvanced web server, the plant-specific small noncoding RNA interference tool pssRNAit, which can be u
110 anosine (m(7)G) "capping" of coding and some noncoding RNAs is critical for their maturation and subs
112 are depleted, there is ectopic elevation of noncoding RNAs linked to sites with increased silencing
113 ses of RNA sequencing data identify the long noncoding RNA lncNB1 as one of the transcripts most over
115 ), its translocation and binding to the long noncoding RNA (lncRNA) BACE1-antisense transcript (BACE1
116 ng genomic elements, including mRNA and long noncoding RNA (lncRNA) core promoters and enhancer RNAs
117 g RNA-sequencing to identify changes in long noncoding RNA (lncRNA) expression in human and mouse CD8
121 ied H19 as one of the most up-regulated long noncoding RNA (lncRNA) in association with Tgfbr2 inacti
122 re we report that the expression of H19 long noncoding RNA (lncRNA) is aberrantly increased in UFs.
123 ing evidence highlights the role of the long noncoding RNA (lncRNA) KCNQ1OT1 in fracture healing.
124 response to temozolomide and found the long noncoding RNA (lncRNA) MALAT1 as one of the most signifi
126 y Pvt1b, a p53-dependent isoform of the long noncoding RNA (lncRNA) Pvt1, expressed 50 kb downstream
127 ntify a group of Y chromosome-expressed long noncoding RNA (lncRNA) that are involved in male non-sma
130 rn was negatively controlled by a novel long noncoding RNA (lncRNA) that we named Stem Cell Inhibitor
131 timulated non-coding RNA 1 (INCR1) as a long noncoding RNA (lncRNA) transcribed from the PD-L1 locus
132 pan-tissue identification of coding and long noncoding RNA (lncRNA) transcripts differentially expres
133 we identified and characterized a novel long noncoding RNA (lncRNA), acting as a regulator of the mon
134 these genes, regulated by a p53-induced long noncoding RNA (lncRNA), could control p53's tumor suppre
136 rox1, an unusually abundant cytoplasmic long noncoding RNA (lncRNA), modulates the levels of mitochon
137 a schizophrenia-associated upregulated long noncoding RNA (lncRNA, AC006129.1) that participates in
143 gene signatures, neither expression of long noncoding RNAs (lncRNA) nor their correlation with speci
145 a micropeptide produced from a putative long noncoding RNA (lncRNAs) that is important in controlling
146 classes have been identified, including long noncoding RNAs (lncRNAs) and circular RNAs (circRNAs).
148 uently used to functionally interrogate long noncoding RNAs (lncRNAs) and discriminate lncRNA loci th
150 have been extensively studied; yet how long noncoding RNAs (lncRNAs) and the loci that transcribe th
152 injury, including up- and downregulated long noncoding RNAs (lncRNAs) and transcriptional regulators,
158 onses to the environment, since several long noncoding RNAs (lncRNAs) are known to quantitatively reg
161 tes mellitus are global emergencies and long noncoding RNAs (lncRNAs) are regulatory transcripts with
181 ide an overview on the emerging role of long noncoding RNAs (lncRNAs) in the regulation of adipocyte
186 We also identified a set of conserved long noncoding RNAs (lncRNAs) that are regulated in a tissue-
187 involves many transcription factors and long noncoding RNAs (lncRNAs) that regulate gene expression.
188 n chromosomal contacts with a subset of long noncoding RNAs (lncRNAs) we have defined as immune gene-
189 NAs), 125 circular RNAs (circRNAs), 366 long noncoding RNAs (lncRNAs), and 3266 messenger RNAs (mRNAs
190 ethylation, transcriptional elongation, long noncoding RNAs (lncRNAs), and CCCTC-binding factor (CTCF
191 (miRNAs), circular RNAs (circRNAs), and long noncoding RNAs (lncRNAs), are proposed novel biomarkers
192 e expression and secondary structure of long noncoding RNAs (lncRNAs), but the contribution of these
193 ely understand the interactions between long noncoding RNAs (lncRNAs), mRNAs and micro-RNAs (miRNAs)
194 undreds of regulated protein-coding and long noncoding RNAs (lncRNAs), some of which are regulated in
198 r the nuclear speckle localization of a long noncoding RNA, MALAT1, suggesting a dynamic regulation o
199 rnal modification of mammalian messenger and noncoding RNAs mediated by specific m(6)A writer, reader
202 r previous study, we discovered that a small noncoding RNA (miR-188-3p) targeting beta-site amyloid p
204 fy DNA methylation alterations in coding and noncoding RNA (ncRNA) across different etiological subty
205 III (RNAPIII)-transcribed, retrotransposable noncoding RNA (ncRNA) elements ubiquitously spread throu
206 the Set3 complex to both protein-coding and noncoding RNA (ncRNA) genes via a SUMO-interacting motif
207 s (sRNAs), including microRNAs (miRNAs), are noncoding RNA (ncRNA) molecules involved in gene regulat
208 th Ro protein and influence Ro's function in noncoding RNA (ncRNA) quality control and processing.
210 NAs (derived from only ~1.5% of the genome), noncoding RNAs (ncRNA) are emerging as versatile key reg
214 discovery, via deep sequencing, of numerous noncoding RNAs (ncRNAs) derived from both EBOV and MARV
217 tors (TFs), chromatin-modifying factors, and noncoding RNAs (ncRNAs) in ~4,300 single cells, encompas
222 , are known to be one of many types of small noncoding RNAs (ncRNAs), but their specific function is
224 regulation of bell pepper fruit ripening by noncoding RNAs (ncRNAs), we examined their expression pr
225 transcriptomic data to identify a novel long noncoding RNA Noncoding Intergenic Co-Induced transcript
228 n mESCs affected the levels of several small noncoding RNAs originating from TET2-bound tRNAs that we
229 enocarcinoma transcript 1 (MALAT1) is a long noncoding RNA overexpressed in various cancers that prom
230 as far reaching implications in the study of noncoding RNAs, particularly within the context of trans
232 asses the cellular mechanisms by which short-noncoding RNAs posttranscriptionally modulate gene expre
233 c lncRNAs, including LIPCAR (long intergenic noncoding RNA predicting cardiac remodeling and survival
235 Circular RNAs (circRNAs) are a class of noncoding RNAs produced by a noncanonical form of altern
236 ation of key pathways such as transcription, noncoding RNAs, protein synthesis and degradation, prote
238 that encompasses PTCHD1, DDX53, and the long noncoding RNA PTCHD1-AS is frequently disrupted in male
243 lum, and further revealed enrichment of long noncoding RNAs, RNAs with retained introns, and a subgro
245 arch, Wang and colleagues show that the long noncoding RNA SATB2-AS1 is dysregulated in colorectal ca
246 esponse (TAR) element, a 59-nucleotide-long, noncoding RNA segment in the 5' long terminal repeat reg
249 events Pol I from producing sense intergenic noncoding RNAs (sincRNAs) that can disrupt nucleolar org
250 Noncoding RNA sequences, including long noncoding RNAs, small nucleolar RNAs, and untranslated m
254 ys a role in production of a wide variety of noncoding RNAs-snoRNAs, scaRNAs, and snRNAs-that are dep
255 s to understand the interaction of different noncoding RNA species to mediate a particular phenotype
261 s of current methods applied to apicomplexan noncoding RNA study and discuss future directions in thi
263 t SWI/SNF is associated with many coding and noncoding RNAs, suggesting that SCHLAP1 may function in
264 of the active VSG is transcribed into a long-noncoding RNA (TERRA), which forms RNA:DNA hybrids (R-lo
265 -induced long noncoding RNA (DINO) is a long noncoding RNA that directly interacts with p53 and there
266 turn, reduced the levels of HAS2-AS1, a long-noncoding RNA that epigenetically controls HAS2 mRNA exp
271 In this study, we identify over 100 long noncoding RNAs that are differentially expressed within
274 describe transcription factor-adjacent long noncoding RNAs that define each subclass and validate th
282 icroRNAs have emerged as critical regulatory noncoding RNAs that tune immune cell responses to physio
283 sm, possibly mediated or regulated by a long noncoding RNA, that supports latency III critical for th
285 utants to define the active isoform of MHV68 noncoding RNA TMER4 and demonstrate that EBV EBER1 funct
291 e identification of a considerable amount of noncoding RNA transcripts, which are increasingly recogn
295 MicroRNAs are a class of important small noncoding RNAs, which have been reported to be involved
296 pproximately, 4500 coding genes and 800 long noncoding RNAs, whose levels correlated with the transcr
300 te X-Chromosome inactivation (XCI), the long noncoding RNA Xist mediates chromosome-wide gene silenci