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1 an be excised by Cre or Int expressed from a nuclear gene.
2 lastid-targeted Cre protein expressed from a nuclear gene.
3 iseases by modification of the corresponding nuclear gene.
4 t controls the expression of several hundred nuclear genes.
5 l demography of J. blancoi populations using nuclear genes.
6 t any trace of introgression in the analysed nuclear genes.
7 of the interaction between the cytoplasm and nuclear genes.
8 ze of mtDNA genes is much lower than that of nuclear genes.
9 earrangement and deletion/disruption of five nuclear genes.
10 :1 induced the expression of similar sets of nuclear genes.
11 and genetic variants in any of the analysed nuclear genes.
12 al response involving 268 almost exclusively nuclear genes.
13 n activation/repression of a large number of nuclear genes.
14 ss all chloroplast genes and the majority of nuclear genes.
15 lastid envelope membranes and are encoded by nuclear genes.
16 ne plastid-encoded gene (clpP1) and multiple nuclear genes.
17 e to translate polycistronically transcribed nuclear genes.
18 of chromatophore genes and most EGT-derived nuclear genes.
19 ts of the restricted genomes, is directed by nuclear genes.
20 well as the induction of development-related nuclear genes.
21 dely used to knock down expression levels of nuclear genes.
22 is composed of three subunits encoded by two nuclear genes: (1) POLG codes for the 140-kilodalton (kD
23 ge by assembling a multilocus data set of 77 nuclear genes (12,149 unambiguously aligned amino acid p
24 protein-coding genes (COI, ND2 and CytB) and nuclear genes (5.8S, ITS2 and 28S) for 516 specimens col
26 regulate the expression of a large number of nuclear genes, a process called retrograde signaling.
27 wo species using DNA sequence data from four nuclear genes (Abd-A, EF1alpha-F1, EF1alpha-F2, and Wing
28 diverse, with mutations in mitochondrial or nuclear genes able to cause defects in mitochondrial gen
29 ributed in part to variation in a duplicated nuclear gene (ACC2) that targets homomeric acetyl-coenzy
30 )-initiated plastid-to-nucleus signaling and nuclear gene activation after mutagenizing a flu line ex
31 tory chain deficiency addressing the role of nuclear genes affecting mitochondrial protein synthesis
32 e plastid regulate photosynthesis-associated nuclear genes and are essential to successful chloroplas
34 nrichment approach to sample 400 single-copy nuclear genes and estimate the phylogenetic relationship
35 riptional regulator of mitochondrion-related nuclear genes and genes encoding subunits of complexes I
36 egregate earlier during speciation than most nuclear genes and hence detect earlier stages of speciat
39 ousand mitochondrial proteins are encoded by nuclear genes and must be imported from the cytosol.
41 me required to remove the plastid marker and nuclear genes and to obtain seed takes 10-16 months, dep
42 found evidence of the horizontal transfer of nuclear genes, and argue that HGT has undoubtedly had pr
43 l molecular data, separate mitochondrial and nuclear genes, and individual loci, and they are robust
44 morphism are also examined in both mtDNA and nuclear genes, and it is shown that the effective popula
45 h the same anticodon are encoded by multiple nuclear genes, and little is known about how mutations i
47 us to retrieve the plastome, 57 single copy nuclear genes, and the nuclear ribosomal ITS from 29 spe
48 ons were found to have captured fragments of nuclear genes ( approximately 840 different fragment acq
49 array data at least 51 plastid genes and 121 nuclear genes are expressed at least two-fold higher in
50 st biogenesis have revealed that hundreds of nuclear genes are regulated by retrograde signals emitte
53 or treating monogenetic disorders, including nuclear genes associated with mitochondrial disorders.
55 sequences of two single-copy protein-coding nuclear genes (BDNF and RAG1) and a set of congruent tim
56 l genes is significantly reduced relative to nuclear genes because of the non-recombining nature of t
57 festans using sequences from portions of two nuclear genes (beta-tubulin and Ras) and several mitocho
58 we removed the effect of any differences in nuclear genes by constructing transmitochondrial cybrids
63 napus or maize (Zea mays), where duplicated nuclear genes compensate for its absence or loss of func
71 Chloroplast signals regulate hundreds of nuclear genes during development and in response to stre
72 des-long standing inefficiencies in targeted nuclear gene editing broadly hinder Chlamydomonas resear
73 tochondrial biology remain, including: which nuclear genes encode mitochondrial proteins; how their e
76 t contains the active site, a family of rbcS nuclear genes encodes the Rubisco small subunits, which
77 t resulted in the identification of REP27, a nuclear gene encoding a putative chloroplast-targeted pr
78 g the cytochrome c oxidase subunit I and the nuclear gene encoding bindin to evaluate the possibility
79 0.70% for cytochrome c oxidase subunit I and nuclear gene encoding bindin, respectively, which is sig
80 e nucleotide salvage pathway, encoded by the nuclear gene encoding deoxyguanosine kinase (DGUOK).
81 t compound heterozygous mutations within the nuclear gene encoding human mitochondrial MTF (mt-MTF) s
82 s demonstrated in yeast mutants in which the nuclear gene encoding mitochondrial methionyl-tRNA formy
83 We used TALEN-technology to knock out the nuclear gene encoding NDUFA9, a subunit of mitochondrial
84 ost exclusively to dominant mutations in the nuclear gene encoding the mitochondrial protein mitofusi
85 ors that regulate both chloroplast genes and nuclear genes encoding chloroplast protein, which sheds
87 her respiratory defects on the expression of nuclear genes encoding components of the respiratory com
88 n the dgd1 dgs1 double mutant, expression of nuclear genes encoding enzymes of the alternative galact
89 ors NRF1 and NRF2 regulate the expression of nuclear genes encoding heme biosynthetic enzymes, protei
91 and biogenesis and changes in expression of nuclear genes encoding mitochondrial proteins in human s
92 e master regulator of the expression of many nuclear genes encoding mitochondrial proteins in yeast.
94 anscription factors regulates a broad set of nuclear genes encoding mitochondrial proteins, including
96 hat IFN-gamma induces the expression of many nuclear genes encoding mitochondrial respiratory chain m
98 e phosphorylation protein complexes, whereas nuclear genes encoding other subunits of the same comple
99 a role in communication between plastid and nuclear genes encoding photosynthetic proteins during ab
100 accumulation of transcripts from plastid and nuclear genes encoding plastid ribosomal proteins during
101 ignals are known to coordinate expression of nuclear genes encoding plastid-localized proteins in a p
102 sociated with reduced neuronal expression of nuclear genes encoding subunits of the mitochondrial ele
103 significantly lower expression of 70% of the nuclear genes encoding subunits of the mitochondrial ele
104 ondrial genome and the coding exons of >1000 nuclear genes encoding the mitochondrial proteome) allow
108 reported to be involved in the expression of nuclear genes essential for chloroplast biogenesis.
109 leaves containing Mu and Ds insertions into nuclear gene exons encoding the critical o- and n-subuni
111 hila We show that ATF4 activation reprograms nuclear gene expression and contributes to neuronal dysf
113 that involves a concurrent reprogramming of nuclear gene expression and plastid morphology for impro
116 and contributed to the loss of p53-dependent nuclear gene expression during genotoxic drug treatment.
117 rcadian clock to fine-tune the regulation of nuclear gene expression in Arabidopsis (Arabidopsis thal
118 ct posttranscriptional control mechanisms of nuclear gene expression in response to plastid-derived r
119 chloroplast retrograde signal that modulates nuclear gene expression in response to stress, can inhib
122 perception and the subsequent regulation of nuclear gene expression in the model plant Arabidopsis t
123 content and codon usage to the efficiency of nuclear gene expression in the unicellular green alga Ch
124 o analyse the effects of these treatments on nuclear gene expression in various Arabidopsis (Arabidop
125 Mechanisms that link neural activity to nuclear gene expression include activity-regulated facto
126 etrograde signaling in plants to ensure that nuclear gene expression is attuned to the needs of the c
130 mbalance also correlates to modifications of nuclear gene expression patterns, which in turn leads to
131 roplast and generates massive changes in the nuclear gene expression required for the transition to p
132 flu mutant of Arabidopsis, reprogramming of nuclear gene expression reveals a rapid transfer of sign
133 Finally, we propose that using a UPR(mt) nuclear gene expression signature may be a more reliable
134 ic stress, chloroplasts communicate with the nuclear gene expression system through a chloroplast unf
135 -to-nucleus retrograde signaling coordinates nuclear gene expression with chloroplast function and is
136 cium entry across the cell surface activates nuclear gene expression, a process critically important
137 timulation at the cell surface to changes in nuclear gene expression, is conserved throughout eukaryo
138 onses, including transcriptional rewiring of nuclear gene expression, return to levels, such as, or e
139 ne the effects of plastid gene expression on nuclear gene expression, we analyzed Arabidopsis mutants
152 xtensive duplications and diversification of nuclear gene families encoding phycobilisome linker prot
154 deficient lines harbouring mutations in the nuclear gene for the factor TAA1 that is required for ps
156 erate features are offset by the presence of nuclear genes for alternative respiratory pathways.
159 ial ATPase complexes formed by disruption of nuclear genes for individual subunits provide a descript
160 ondrial DNA (mtDNA) is entirely dependent on nuclear genes for its transcription and replication.
162 1 mutation suppresses the down-regulation of nuclear genes for photosynthesis induced by the prors1-1
163 cted phylogenetic trees from 14 kilobases of nuclear genes for representatives from most major primat
164 ion, at least in part, via the expression of nuclear genes for the plastid transcription machinery.
165 te organellar exomes and a comparable set of nuclear genes for this major lineage of land plants.
166 hylogeny of Vespidae based on data from four nuclear gene fragments (18S and 28S ribosomal DNA, abdom
168 the expression of 80 metabolically relevant nuclear genes from laser-capture microdissected non-tang
170 chain, we show that when in combination with nuclear genes from the alloxan-resistant (ALR) strain, m
171 families were sampled for 19 protein-coding nuclear genes, from which maximum likelihood tree estima
172 ntrast, light regulation of PhANGs and other nuclear gene groups appears to be fully functional in th
173 act of chloroplast redox signals on distinct nuclear gene groups including genes for the mitochondria
174 ponse that involves changes in expression of nuclear genes implicated in chloroplast biogenesis, prot
175 tic perturbation of the MutS Homolog1 (MSH1) nuclear gene in five plant species, that MSH1 functions
176 ar phenotypes associated with mutations in a nuclear gene in maize (Zea mays), white2 (w2), encoding
178 genome evolution, with 18% (or 4,500) of all nuclear genes in Arabidopsis thaliana having a cyanobact
179 , and the expression of inflammation-related nuclear genes in both parental and rho(0) SAE cells in r
180 recent analyses have turned up a handful of nuclear genes in chromalveolates that are of green algal
181 ptional activation of mitochondrion-targeted nuclear genes in concert with reduced signaling via pero
183 control the expression of a large number of nuclear genes in response to environmental and developme
186 relative mutation rates of mitochondrial and nuclear genes influence mitochondrial-to-nuclear gene tr
187 ld underlie mtDNA introgression, and whether nuclear genes interacting with mitochondria ("mitonuc" g
188 d found additional heterozygous mutations in nuclear genes interacting with mt-tRNAGlu including EARS
190 lpha (ERRalpha) directs the transcription of nuclear genes involved in energy homeostasis control and
192 Mutations in several mitochondrial DNA and nuclear genes involved in mitochondrial protein synthesi
193 owed a combined approach of sequencing known nuclear genes involved in mitochondrial protein synthesi
194 relate with clinical outcomes and identified nuclear genes involved in oxidative phosphorylation and
196 revealed differential regulation of numerous nuclear genes involved in stress responses together with
197 its mitochondrial genome but also nearly all nuclear genes involved in transcription and replication
198 unable to express ARG8(m) when this normally nuclear gene is substituted for ATP6 or ATP8 in mitochon
199 express a recoded ARG8(m) when this normally nuclear gene is substituted for ATP8 in mitochondrial DN
200 orrelation between polymorphism in mtDNA and nuclear genes is found across populations, which suggest
201 ongly supported conflict in the remainder of nuclear genes is suggestive of incomplete lineage sortin
202 ltransferase-like 15 (METTL15), encoded by a nuclear gene, is responsible for 12S mt-rRNA methylation
203 cumulation of the LIGHT HARVESTING COMPLEX B nuclear genes LHCB1.2 and LHCB2.3 was markedly reduced.
204 terility is caused by a dominant allele in a nuclear gene, mean-field calculations greatly underestim
205 l-dominant or recessive mutations in several nuclear genes, most of which play a role in mtDNA replic
208 g enhances the ability to identify potential nuclear gene mutations in patients with biochemically de
209 ociated with NADH dehydrogenase subunits and nuclear gene mutations that affect mitochondrial functio
210 view focuses on our current understanding of nuclear gene mutations that produce mtDNA alterations an
212 functional ACC2, tolerant alleles of several nuclear genes, not yet identified, enhance the growth of
213 the second scenario, we demonstrated that a nuclear gene of oxygenic photosynthesis, psbO, is expres
215 ve significantly altered expression of eight nuclear genes of the alternative complement, inflammatio
216 ts, we examined the effect of a single plant nuclear gene on the expression and transmission of pheno
217 e time estimates with studies using a single nuclear gene or whole mitochondrial genomes, we find tha
218 e original endosymbiont have been usurped by nuclear genes or interactions, conserved functional elem
221 g1 and rpoC2/sig2, but not for other plastid/nuclear gene pairs, and identified the correlation of dN
223 e present evidence that the maize (Zea mays) nuclear gene Pentatricopeptide repeat 2263 (PPR2263) enc
225 f some but not all photosynthesis-associated nuclear genes (PhANGs) and change the fluence rate respo
226 nstrate that HiToP photosynthesis-associated nuclear genes (PhANGs) are largely regulated by translat
227 ased expression of photosynthesis-associated nuclear genes (PhANGs) when chloroplast development has
230 cular level because of the massive number of nuclear genes potentially involved in intramitochondrial
232 MutS HOMOLOG1 (MSH1) is a plant-specific nuclear gene product that functions in both mitochondria
234 subunits and a different subset of the eight nuclear gene products that make up this respiratory comp
238 FINDINGS: We use three mitochondrial and one nuclear gene regions to estimate the phylogenetic relati
240 lular bioenergetics and expression levels of nuclear genes related to complement, inflammation and ap
241 e frequency, whereas silencing expression of nuclear genes related to plastid genome expression and t
243 rbation of plastid homeostasis and represses nuclear genes required for normal chloroplast developmen
244 rders have been associated with mutations of nuclear genes responsible for mitochondrial DNA maintena
245 tochondrial mRNAs or alter the expression of nuclear genes responsible for mitochondrial transcriptio
246 nalyses using 59 carefully selected low-copy nuclear genes resulted in highly supported relationships
247 owever, phylogenetic analyses of 20 unlinked nuclear genes reveal a genome-wide signal that unequivoc
248 myces cerevisiae selected strains deleted in nuclear genes revealed that cells lacking the Mlp1/2 nuc
251 ore than 1,100 mitochondrial, apicoplast and nuclear gene sequences from chimpanzees and gorillas rev
254 e two treatments inhibited largely different nuclear gene sets, suggesting that they affected differe
257 tructurally unique intron-poor collection of nuclear genes skewed toward nucleic acid metabolism.
258 transcriptional cofactor that activates many nuclear genes specifying mitochondrial respiratory funct
259 sults reveal significant variability in both nuclear genes, suggesting that the commonality of yellow
260 ed time-calibrated phylogeny inferred from a nuclear gene supermatrix that includes 520 acanthomorph
262 ine, TAG-FN, was caused by disruption of the nuclear gene (SUPPRESSOR OF VARIEGATION1 [SVR1]) for a c
263 l but two membrane components are encoded in nuclear genes, synthesized on cytoplasmic ribosomes, imp
266 ntrolled manner owing to deletion of Sod2, a nuclear gene that encodes the mitochondrial antioxidant
267 tolerance is mediated by ACC2, a duplicated nuclear gene that targets homomeric acetyl-coenzyme A ca
269 t of 29 slowly evolving mitochondria-derived nuclear genes that are less biased than mitochondria-enc
270 als accounted for at least one subset of the nuclear genes that are regulated by the plastid biogenes
271 and all three associate with NRF-2-dependent nuclear genes that direct the expression of the mitochon
274 the identification of numerous mutations of nuclear genes that impair mtDNA maintenance and expressi
275 e concerted regulation of distinct groups of nuclear genes that may avert harm from mitochondrial mal
276 This review discusses a few newly discovered nuclear genes, their function with respect to the phot-,
279 y loop that couples cytoskeletal dynamics to nuclear gene transcription during brain development.
283 This report shows that plant-plant lateral nuclear gene transfers can be a potent source of genetic
285 abase comprises partial sequences from three nuclear genes: translation elongation factor 1alpha (EF-
287 of expression of targeted stress-responsive nuclear genes via modulation of the levels of MEcPP, a s
288 e known to repress photosynthesis-associated nuclear genes via retrograde signals from the disturbed
290 relationship in mitochondrial and individual nuclear genes, we conclude that host and parasite occupy
294 lize products of 37 mitochondrial and >1,000 nuclear genes, which should be compatible with each othe
295 in the mitochondrial DNA-encoded genes or in nuclear genes whose products are imported into the mitoc
296 ations in mitochondrial DNA and mutations in nuclear genes, whose protein products are involved in mi
297 Importantly, the transfer of functional nuclear genes with adaptive significance has been report
298 its target promoters, activating a subset of nuclear genes with roles in the biogenesis of respirator
299 mtDNA accumulated more lesions than did two nuclear genes, with total damage of the mt genome estima
300 s accumulate substitutions more quickly than nuclear genes, yet the impact of selection on mitochondr